Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrSP-4 coat protein gene, partial cds.

ACC No: KC748210

Dated: 2013-06-04 | Length: 924 | CRC: -476694908

                
ID   KC748210; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
XX
AC   KC748210;
XX
DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
XX
DE   Papaya ringspot virus isolate BrSP-4 coat protein gene, partial cds.
XX
KW   .
XX
OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
XX
RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (26-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
XX
CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrSP-4"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Itapira, Sao Paulo"
FT                   /collected_by="Douglas Rodriguez Martinez"
FT                   /collection_date="24-Feb-2011"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75829.1"
FT                   /translation="SRSIDDYQPVCSSDTHVFHQSKNEAVDAGLNEKRKKKERTKEKEE
FT                   KTKEEKEKDNASDGNDVSTSTKTGERDRDVNVGTSGTFAVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRDNYGLNDNEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNANERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
XX
SQ   Sequence 924 BP; 324 A; 155 C; 221 G; 224 T; 0 other;

kc748210 Length: 924  04-JUN-2013  Type: N  Check: 6637  ..

       1  tcaaggagca ttgatgatta tcaacctgtt tgtagcagtg atacacatgt
      51  atttcatcag tccaaaaatg aagctgtgga tgctggttta aatgaaaagc
     101  gtaagaaaaa agagagaaca aaagaaaaag aagagaaaac aaaagaagag
     151  aaagaaaaag acaatgctag tgacggaaac gatgtgtcaa ctagcacaaa
     201  aactggagag agagacagag atgtcaatgt tgggactagt ggaactttcg
     251  ctgttccgag aacaaaatca tttactgata agatgatttt acctagaatt
     301  aagggaaaga ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgagggat aattatggcc ttaatgataa tgaaatgcaa
     451  ataatgctaa atggcttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caggttgatt
     551  atccaatcaa gcctttaatt gagcatgcta ctccgtcatt taggcaaatt
     601  atggctcatt tcagtaacgc ggcagaagcg tacatcgcaa aaagaaatgc
     651  taatgaaagg tacatgccgc ggtatgggat caagagaaat ttgactgaca
     701  ttagtctcgc tagatatgct ttcgatttct atgaggtaaa ttcgaagaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagcgctgcg
     801  aaacactaat cgcaggatgt ttggtatgga cggcagtgtc agtaacaagg
     851  aagaaaacac ggagaggcac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga