Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrBA-2 coat protein gene, partial cds.

ACC No: KC748213

Dated: 2013-06-04 | Length: 924 | CRC: -633356512

                
ID   KC748213; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748213;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate BrBA-2 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (27-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrBA-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Cruz das Almas, Bahia"
FT                   /collected_by="Hermes Peixoto"
FT                   /collection_date="25-Nov-2010"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75832.1"
FT                   /translation="SMKIDDYQSVCSSNTHVFHQSKNEAVDAGLNEKRKEKEKQEEKKE
FT                   EKQKKKEKDDAITGNDVSTSTRTGERDRDVNVGTSGTFTVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDDEMQIALNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYITKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVDDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 327 A; 153 C; 215 G; 229 T; 0 other;

kc748213 Length: 924  04-JUN-2013  Type: N  Check: 8758  ..

       1  tcaatgaaaa ttgatgatta tcaatctgtt tgtagcagca acacacatgt
      51  gtttcatcag tccaaaaatg aagctgtgga tgctggttta aatgaaaagc
     101  gtaaagaaaa agagaaacaa gaagaaaaaa aagaagaaaa acaaaaaaag
     151  aaagaaaaag acgatgctat tacgggaaac gatgtgtcaa ctagcacaag
     201  aactggagag agagacagag atgtcaatgt tgggaccagt ggaactttca
     251  ctgttccgag aacaaaatca tttactgata agatgatttt acctagaatt
     301  aagggaaaaa ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaata ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtacgaagg agtgaggaat gattatggcc ttaatgatga tgagatgcaa
     451  atagcgctaa atggtttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caggttgatt
     551  atccaatcaa acctttaatt gagcatgcta ctccgtcgtt taggcaaatt
     601  atggctcatt tcagtaacgc ggcagaagca tacattacaa agagaaatgc
     651  tactgagagg tacatgccgc ggtatgggat caagagaaat ttgactgaca
     701  ttagtcttgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgtgaagc tcacatgcag atgaaagctg cagcgctgcg
     801  aaacactaat cgcagaatgt ttggtatgga cggcagtgtt agtaacaagg
     851  aagaaaacac ggagagacac acagtggatg atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga