Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrRJ-1 coat protein gene, partial cds.

ACC No: KC748214

Dated: 2013-06-04 | Length: 924 | CRC: 1074729652

                
ID   KC748214; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748214;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate BrRJ-1 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (27-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrRJ-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Rio de Janeiro"
FT                   /collected_by="Aurivan Soares"
FT                   /collection_date="11-Jul-2010"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75833.1"
FT                   /translation="SRSINDYQSVCSSNTHVFHQSKNEAVDAGLNEKRKEKEKQKEKEE
FT                   EKQKEKEKDDATDGNDVSTSTKTGERDRDVNVGTSGTFTVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPKQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDEETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYITKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 328 A; 154 C; 214 G; 228 T; 0 other;

kc748214 Length: 924  04-JUN-2013  Type: N  Check: 8795  ..

       1  tcaaggagca ttaatgatta tcaatctgtt tgtagcagca atacacatgt
      51  gtttcatcag tccaaaaatg aagctgtgga tgctggttta aatgagaagc
     101  gtaaagaaaa agagaaacaa aaagaaaaag aagaagaaaa acaaaaagag
     151  aaagaaaaag acgatgctac tgacggaaac gatgtgtcaa ctagcacaaa
     201  aactggagag agagacagag atgtcaatgt tgggaccagt ggaactttca
     251  ctgttccgag aacaaaatca tttactgata agatgatttt acctagaatt
     301  aagggaaaga ctgtccttaa tttaaatcat cttcttcagt ataatccgaa
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcaa
     451  ataatgctaa atggcttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tgaggaaact caggttgatt
     551  atccaatcaa gcctttaatt gagcatgcta ctccgtcttt taggcaaatt
     601  atggctcatt tcagtaacgc ggcagaagca tacattacaa agagaaatgc
     651  tactgagagg tacatgccgc ggtatgggat caagaggaat ttgactgaca
     701  ttagtctcgc cagatatgct ttcgatttct atgaagtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagctctgcg
     801  aaacactaat cgcagaatgt ttggtatgga cggtagtgtc agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga