Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrES-3 coat protein gene, partial cds.

ACC No: KC748217

Dated: 2013-06-04 | Length: 924 | CRC: -364417422

                
ID   KC748217; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748217;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate BrES-3 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (27-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrES-3"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Espiritu Santo, Linhares"
FT                   /collected_by="Enilton Santana"
FT                   /collection_date="14-Oct-2010"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75836.1"
FT                   /translation="SRSIDDYQPVCSNNTNVFHQSKNEAVDAGLNEKRKEKEKQKEKEE
FT                   EKQKEKEKDEASGGNDVSTSTRTGERDRDVNVGTSGTFTVPRTKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDSEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYITKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 326 A; 160 C; 221 G; 217 T; 0 other;

kc748217 Length: 924  04-JUN-2013  Type: N  Check: 2390  ..

       1  tcgaggagca ttgatgatta ccaacctgtt tgtagcaaca atacaaacgt
      51  gtttcatcag tccaaaaatg aagctgtgga tgctggtcta aatgaaaaga
     101  gaaaagaaaa agagaaacaa aaagaaaaag aagaagaaaa acaaaaagag
     151  aaagaaaaag acgaagctag tggcggaaac gatgtgtcaa ctagcacaag
     201  gactggagag agagacagag atgtcaatgt tgggaccagt ggaactttca
     251  ctgttccgag aacaaaatca tttactgata agatgattct acctagaatt
     301  aaaggaaaaa ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgatag tgaaatgcaa
     451  ataatgctta atggcttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caggttgatt
     551  atccaatcaa gcctttaatt gagcatgcta ctccgtcgtt taggcaaatt
     601  atggctcact tcagtaacgc ggcggaagca tacattacaa agagaaatgc
     651  tactgagagg tacatgccgc ggtatgggat caagagaaat ttgactgaca
     701  ttagtctcgc cagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagcgctgcg
     801  aaacactaat cgtagaatgt ttggtatgga cggcagtgtc agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga