Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate BrPR-2 coat protein gene, partial cds.

ACC No: KC748223

Dated: 2013-06-04 | Length: 924 | CRC: 714022423

                
ID   KC748223; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748223;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate BrPR-2 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (27-FEB-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="BrPR-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Brazil:Maringa, Parana"
FT                   /collected_by="Emi R. Lorenzeti"
FT                   /collection_date="04-Feb-2011"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75842.1"
FT                   /translation="SRSIDDHQPVCGSNAHVFHQSKTEAVDAGLNEKRKEKEKQKEKEE
FT                   EKQKEKEKDDASDGNDVSTSTKIGERDRDVNVGTSVNFTVPRTKSFTDKMILPRIKGKA
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMQIMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGEIQVDYPVKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTNRRMFGIDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 322 A; 157 C; 221 G; 224 T; 0 other;

kc748223 Length: 924  04-JUN-2013  Type: N  Check: 7693  ..

       1  tcaaggagca ttgatgatca tcaacctgtt tgtggcagca atgcacatgt
      51  gtttcatcag tccaaaactg aagctgtgga tgctggttta aatgaaaagc
     101  gtaaagaaaa agaaaaacaa aaagaaaaag aagaagaaaa acagaaagag
     151  aaagaaaaag acgatgctag tgacggaaac gatgtgtcaa ctagcacaaa
     201  aattggagag agagacagag atgtcaatgt tgggaccagt gtaaatttta
     251  ctgttccgag aacaaaatca tttactgata agatgattct acccagaatt
     301  aagggaaagg ctgtccttaa tttaaatcat ctccttcagt ataatccgca
     351  acaaattgac atttctaaca ctcgtgccac tcaatcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgagatgcaa
     451  ataatgctaa atggcttgat ggtttggtgt atcgaaaacg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggagaaatc caggttgatt
     551  atccagtcaa gcctttaatt gagcatgcta ctccgtcgtt taggcaaatt
     601  atggctcatt tcagtaacgc ggcagaagcg tacattgcaa agagaaatgc
     651  tactgagagg tacatgccgc gatatgggat caagagaaat ttgactgaca
     701  ttagtctcgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc tcacatgcag atgaaagctg cagcactgcg
     801  aaacactaat cgcagaatgt ttggtataga cggcagtgtc agtaacaagg
     851  aagaaaacac ggagaggcac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga