Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate CbGR-1 coat protein gene, partial cds.

ACC No: KC748224

Dated: 2013-06-04 | Length: 924 | CRC: 1159727339

                
ID   KC748224; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748224;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate CbGR-1 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (01-MAR-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="CbGR-1"
FT                   /mol_type="genomic RNA"
FT                   /country="Cuba:Jiguani, Granma"
FT                   /collection_date="08-Feb-2011"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75843.1"
FT                   /translation="ARSIHDYQLACSNNTHVFHQSKNEAVDAGLNDKLREKEKQKEKEK
FT                   EKQKEKEKDDASDGNDVSTSTKTGERDRDVNVGTSGTFTVPRIKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPQQIDISNTRATQSQFEKWYEGVRSDYGLNDNEMQVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGQTQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTTRRMFGMDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 319 A; 161 C; 222 G; 222 T; 0 other;

kc748224 Length: 924  04-JUN-2013  Type: N  Check: 8037  ..

       1  gcaaggagta tccatgatta tcaacttgct tgtagcaata atacccatgt
      51  gtttcatcag tctaaaaatg aagctgtgga tgctggtttg aacgacaagc
     101  tcagagaaaa agaaaaacag aaagaaaaag aaaaagaaaa acaaaaagag
     151  aaagaaaaag acgatgctag tgacggaaat gatgtgtcaa ctagcacaaa
     201  aactggagag agagatagag atgtcaatgt tgggaccagt ggaactttca
     251  ctgttccgag aattaaatca tttactgata aaatgatttt accgagaatt
     301  aagggaaaga ctgtccttaa tttaaatcat cttcttcagt ataatccgca
     351  acaaattgac atctccaaca ctcgtgccac tcagtcacaa tttgagaagt
     401  ggtatgaggg agtaaggagt gattatggcc ttaatgataa tgaaatgcaa
     451  gtgatgctaa atggcttgat ggtttggtgt atcgagaatg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tgggcaaacc caagttgact
     551  atccaatcaa gcctctaatc gagcatgcaa ctccgtcatt taggcagatt
     601  atggctcact ttagtaatgc ggcagaagca tacattgcga agagaaatgc
     651  tactgagagg tacatgccgc gatatggaat caagagaaat ttgactgaca
     701  ttagcctcgc tagatacgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgatagag ctcgcgaagc gcatatgcag atgaaggctg cagcgctgcg
     801  aaacactact cgcagaatgt ttggtatgga cggcagtgtt agtaacaagg
     851  aagagaacac ggagagacac acagtggaag atgtcaatag ggacatgcac
     901  tctctcctgg gtatgcgcaa ctga