Sequence of DPV Papaya ringspot virus

Papaya ringspot virus isolate CbMT-2 coat protein gene, partial cds.

ACC No: KC748228

Dated: 2013-06-04 | Length: 924 | CRC: -1065484100

                
ID   KC748228; SV 1; linear; genomic RNA; STD; VRL; 924 BP.
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AC   KC748228;
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DT   04-JUN-2013 (Rel. 117, Created)
DT   04-JUN-2013 (Rel. 117, Last updated, Version 1)
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DE   Papaya ringspot virus isolate CbMT-2 coat protein gene, partial cds.
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KW   .
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OS   Papaya ringspot virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   "Molecular and biological characterization of Papaya ringspot virus
RT   isolates from Brazil and Cuba aiming to support disease control by cross
RT   protection and transgenic plants";
RL   Unpublished.
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RN   [2]
RP   1-924
RA   Rodriguez-Martinez D., Geraldino-Duarte P.S., Gonzalez-Olmedo J.,
RA   Figueira A.R.;
RT   ;
RL   Submitted (01-MAR-2013) to the INSDC.
RL   Department of Plant Pathology, Federal University of Lavras, Campus
RL   Universitario da UFLA, Lavras, Minas Gerais 37200-000, Brazil
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CC   ##Assembly-Data-START##
CC   Assembly Method       :: DNA Baser Sequence Assembler v. 2
CC   Sequencing Technology :: Applied Biosystems 3730/3730xl DNA
CC                            Analyzers
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .924
FT                   /organism="Papaya ringspot virus"
FT                   /host="Carica papaya L"
FT                   /isolate="CbMT-2"
FT                   /mol_type="genomic RNA"
FT                   /country="Cuba:Jaguey Grande, Matanzas"
FT                   /collection_date="07-Feb-2011"
FT                   /PCR_primers="fwd_seq: cttgarcargctccattc, rev_seq:
FT                   ctaaaagcacggagg"
FT                   /note="biotype: P"
FT                   /db_xref="taxon:12205"
FT   CDS             <1. .924
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /protein_id="AGM75847.1"
FT                   /translation="SKSTDDYQLVCSDNTHVFHQSKNEAVDAGLNEKLKEKEKQKEKEK
FT                   EKQKEKEKDDVSDGNGESTSTKIGERDRDVNVGTDGTFTVPRIKSFTDKMILPRIKGKT
FT                   VLNLNHLLQYNPKQIDISNTRATQSQFEKWYEGVRNDYGLNDNEMHVMLNGLMVWCIEN
FT                   GTSPDISGVWVMMDGETQVDYPIKPLIEHATPSFRQIMAHFSNAAEAYIAKRNATERYM
FT                   PRYGIKRNLTDISLARYAFDFYEVNSKTPDRAREAHMQMKAAALRNTSRRMFGIDGSVS
FT                   NKEENTERHTVEDVNRDMHSLLGMRN"
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SQ   Sequence 924 BP; 322 A; 153 C; 221 G; 228 T; 0 other;

kc748228 Length: 924  04-JUN-2013  Type: N  Check: 2413  ..

       1  tcgaagagca ctgatgatta ccaacttgtt tgtagtgata acacgcatgt
      51  gtttcatcag tccaaaaacg aagctgttga cgctggtttg aatgaaaagc
     101  tcaaagaaaa agaaaaacag aaagaaaaag aaaaagaaaa acaaaaagag
     151  aaggaaaaag atgatgttag tgacggaaat ggtgagtcaa ctagcacaaa
     201  aattggagag agagatagag atgtcaatgt tggaaccgat ggaacattca
     251  ctgttccgag aattaaatca tttactgata agatgatttt accgagaatt
     301  aaaggaaaga ctgttctcaa cttaaaccat cttcttcagt ataatccgaa
     351  acaaattgac atttctaaca ctcgtgccac tcagtcacaa tttgagaagt
     401  ggtatgaggg agtgaggaat gattatggcc ttaatgataa tgaaatgcac
     451  gtgatgctta atggcttgat ggtttggtgt atcgaaaatg gtacatctcc
     501  agacatatct ggtgtctggg ttatgatgga tggggaaacc caagttgatt
     551  acccaatcaa gcctttaatt gagcatgcta ctccgtcatt taggcagatt
     601  atggctcact ttagtaacgc ggcagaagca tacattgcaa agagaaatgc
     651  tactgagagg tacatgccgc ggtatggaat taagagaaat ttgactgaca
     701  ttagccttgc tagatatgct ttcgatttct atgaggtgaa ttcgaaaaca
     751  cctgataggg ctcgcgaagc ccatatgcag atgaaagctg cggcgctgcg
     801  aaacactagt cgcagaatgt ttggcataga tggcagtgtt agtaacaagg
     851  aagaaaacac ggagagacac acagtggaag atgtcaatag agacatgcac
     901  tctctcctgg gtatgcgcaa ctga