Sequence of DPV Cowpea aphid-borne mosaic virus

Cowpea aphid-borne mosaic virus isolate Planaltina-DF coat protein mRNA, partial cds.

ACC No: KC777407

Dated: 2013-04-30 | Length: 828 | CRC: 1415627374

                
ID   KC777407; SV 1; linear; mRNA; STD; VRL; 828 BP.
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AC   KC777407;
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DT   30-APR-2013 (Rel. 116, Created)
DT   30-APR-2013 (Rel. 116, Last updated, Version 1)
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DE   Cowpea aphid-borne mosaic virus isolate Planaltina-DF coat protein mRNA,
DE   partial cds.
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KW   .
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OS   Cowpea aphid-borne mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
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RN   [1]
RP   1-828
RA   Rodrigues L.K., Silva L.A., Garcez R.M., Chaves A.L., Colariccio A.,
RA   Harakava R., Eiras M.;
RT   "Phylogenetic analysis of Cowpea aphid-borne mosaic virus passion-flower
RT   isolates from Brazil";
RL   Unpublished.
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RN   [2]
RP   1-828
RA   Rodrigues L.K., Silva L.A., Garcez R.M., Chaves A.L., Colariccio A.,
RA   Harakava R., Eiras M.;
RT   ;
RL   Submitted (12-MAR-2013) to the INSDC.
RL   Laboratory of Plant Virology, Instituto Biologico, Av. Conselheiro
RL   Rodrigues Alves, 1252, Sao Paulo, SP 04014002, Brazil
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CC   ##Assembly-Data-START##
CC   Sequencing Technology :: Sanger dideoxy sequencing
CC   ##Assembly-Data-END##
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FH   Key             Location/Qualifiers
FH
FT   source          1. .828
FT                   /organism="Cowpea aphid-borne mosaic virus"
FT                   /host="passion flower"
FT                   /isolate="Planaltina-DF"
FT                   /mol_type="mRNA"
FT                   /country="Brazil"
FT                   /collection_date="Feb-2011"
FT                   /db_xref="taxon:12199"
FT   CDS             <1. .828
FT                   /codon_start=1
FT                   /product="coat protein"
FT                   /note="CP"
FT                   /protein_id="AGK29854.1"
FT                   /translation="SDGKDKELDAGKDKDKVKEAKEQSMQQKQAKNKEVKETERDVSTS
FT                   SLGQLVPRLQKISKKMNMPMIAGRVLLDLDHLIEYKPAQIDLYNTRASKTQLSKWFEAI
FT                   KGEYELDDDKMGVVMNGFMVWCIENGTSPDVNGVWTMMDGDEQVEFPLKPIVENAKPTL
FT                   RQIMHHFSDAAEAYIEMRISEGFYMPRYGLLRNLRDKSLARYAFDFYEVTSRTSDRARE
FT                   PIAQMKLAALANVNTKMFGLNGNVAPTSENTESHTGTGVYSRTGSLLGMTNGQ"
XX
SQ   Sequence 828 BP; 277 A; 163 C; 217 G; 171 T; 0 other;

kc777407 Length: 828  30-APR-2013  Type: N  Check: 83  ..

       1  tctgatggaa aggataaaga attggatgca ggcaaggaca aagacaaagt
      51  caaagaagcc aaagagcagt caatgcaaca aaagcaagca aagaacaaag
     101  aagttaagga aacggagaga gacgtttcaa ctagctcttt gggacagcta
     151  gttccgcgtc tgcaaaagat cagtaaaaag atgaatatgc ccatgatcgc
     201  tggtagagtg cttctcgatt tggaccattt gatagagtat aagccagcac
     251  aaatcgatct atacaacacc agagcatcaa agacacaact cagcaaatgg
     301  tttgaggcca tcaagggaga atacgagttg gatgacgaca agatgggtgt
     351  agtcatgaat gggttcatgg tttggtgcat tgaaaatgga acctcaccgg
     401  atgtgaatgg ggtgtggacc atgatggatg gggacgagca agtggaattt
     451  ccgctcaaac ccatcgtgga gaatgcaaaa cccacactca ggcaaattat
     501  gcaccacttc tcagacgcag ctgaagcgta catcgagatg agaatttctg
     551  aagggttcta catgcccagg tatggactac tgaggaattt aagagacaag
     601  agcttagcaa ggtatgcttt cgatttctat gaagtcacat ctagaacttc
     651  cgacagagca agggagccaa tagcacagat gaagcttgca gctctcgcca
     701  atgttaacac caagatgttt ggcctgaatg ggaacgtggc accaactagt
     751  gagaacactg agagccacac tggcactgga gtgtattcca gaacaggctc
     801  cctcttaggg atgacgaatg gtcagtag