Sequence of DPV Soil-borne wheat mosaic virus
Soil-borne wheat mosaic virus (SBWMV) complete RNA 1 segment: 150 kDa protein, 209 kDa readthrough protein and 37 kDa protein genes, complete cds.
ACC No: L07937
Dated: 2000-03-04 | Length: 7099 | CRC: -1857761956
!!NA_SEQUENCE 1.0
ID WMORNA1A standard; RNA; VRL; 7099 BP.
XX
AC L07937;
XX
SV L07937.1
XX
DT 25-MAR-1993 (Rel. 35, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 7)
XX
DE Soil-borne wheat mosaic virus (SBWMV) complete RNA 1 segment: 150 kDa
DE protein, 209 kDa readthrough protein and 37 kDa protein genes, complete
DE cds.
XX
KW 150 kDa protein; 209 kDa protein; 37 kDa protein; readthrough protein.
XX
OS soil-borne wheat mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-7099
RX MEDLINE; 93303914.
RA Shirako Y., Wilson M.A.;
RT "Complete nucleotide sequence and organization of the bipartite RNA genome
RT of soil-borne wheat mosaic virus";
RL Virology 195:16-32(1993).
XX
DR SPTREMBL; Q06359; Q06359.
DR SPTREMBL; Q06360; Q06360.
DR SPTREMBL; Q89249; Q89249.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7099
FT /db_xref="taxon:28375"
FT /organism="soil-borne wheat mosaic virus"
FT /strain="US-Nebraska, 1981 wild-type"
FT CDS 102. .5588
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89249"
FT /note="opal suppression"
FT /transl_except=(pos:4062. .4064,aa:OTHER)
FT /product="209 kDa readthrough protein"
FT /protein_id="AAA48492.1"
FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY
FT LDAVERQKVKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKRSWVYDIGGNWATHVKRNDGRKVHCCCPTVDIRDSARKTVRWASIEKYLDEK
FT EEIPPEIGERIKRLQADEDRIYANLKSEKAQPEDLDGKWYCGNRFEDCVFRADRAYAMA
FT IHSIYDIDLSDLANALEEKRIKVMSGTFLFSVDLLLGKKSGTLPTMDGFFEVEDGYVKY
FT GFHNDTNPGYKHNLNQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN
FT GVVADESFKCIPIDNKDEVVFPIFEVDQKTDALVFSEILLSRDFVQRAIEYTGRLKPAQ
FT LTSDNVNTYLTSTNNTIIIGGSSKKNATKVDATLIQQITTTLIVWTELMNQRQKRVLEK
FT LRMQMKDDVDFMTLAHATFLKMFGKVSYYQRALRCFANWISYVHGADAIQFRNVPLYAE
FT VTDRIKLWKNYAPNQGFVLDLEELDVKIKLHEITEREKRDVSRCIVSGKLGELSSVDNT
FT ECGAVLDGKDYKDSRRKTTFEDLLDGEVATNFLDNWCDKTDHFNFSRSDAVSKYAWGMK
FT LLKGVWEFLLPPLHFAPVYVDAEQARIRLNAEIVTVVEHAVTESNVGLTGVEKAEFADA
FT MSFLVGAAKHLEKRKEVAQQAVVEAVEAVRELRKVHSPADVCNAVDLWSAFEKDLDDDD
FT ETGTTATIVEKGKAVCDDDVQVVLCGSSSTSSVEEVSKEAELFVETIESQASSVTETSD
FT VTTEVAASSSDESVMSEVPEKSWASVAEDESDDSYYLRSMIISDKVQKSALPKRPDFSK
FT YSTLQQKAKQEALWYLQCKIVSDRTTLRSIIDDHLRGMFHNGNCELPKDSAFLDYTVDN
FT CGTWMYGKPSRPGHSYGVGFSLDTKQRITKCELVKLMWNRDCRGQMNQKPVNTRAFQYL
FT LLSDLSFMMNELVIYRNLQQVVKKKERTKQARITLRDGVPGCGKSTWILNNANPMKDMV
FT LCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAG
FT IVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAH
FT YLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADL
FT YKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPGGRKGQPYEIVATTRHRRS
FT LVYYTAIEDRLFEDISDMQDVMESKLMKNLCSELTKXRFGSKYESILICDREVRVPDVG
FT TPVIIQDFYDRVLPGNSTMDSHFDGYEVSTSDISIELENCTVQPNKNVKVWQDKRGLVP
FT VLRTAMPPKRQNLPVEAMLALKKRNMAAPKLQEAVNEFEVIERTVNRAKEIFFDTSLID
FT DSEVSTRESNLRWWKRQSTTAKAQLKKETRLLHELDLCYYNYCIKGDEKPKMDRSPQHE
FT YGALQTVVFPDKIVNALFGPAMKEINERIRLALKPHVVYNSRMNAEELNRTVEFLDPEE
FT DFNAFEIDFSKFDKSKTSLHIRAVIELYKLFGLNDLFALLWEKSQCQTKIRDFVNGITA
FT YLLYQQKSGNCDTYGSNTWSAALALLESMPLEKAKFMIFGGDDSLILFPKHLTIEDPCR
FT RLASLWNFDCKLFDFKHNMFCGKFLLKVGDRFKFAPDPMKLITKLGRKDIVDGRLLSEI
FT FVSVGDNYRSYRDYRILEQLTYALRERYRTTEDPTAALVALKKYIFDFKLWASMFNYKG
FT EFVECRVDRNFEW"
FT CDS 102. .4064
FT /codon_start=1
FT /db_xref="SPTREMBL:Q06359"
FT /product="150 kDa protein"
FT /protein_id="AAA48491.1"
FT /translation="MPIDSSSILGIISEEDVIRAAISTSATKFGSQLHSTVCDHVKETY
FT LDAVERQKVKKKIDVRRDLSQEQLQLLNDLYPERHIVSSNCERGTHSFAAASRKIETDL
FT LLSRIPKRSWVYDIGGNWATHVKRNDGRKVHCCCPTVDIRDSARKTVRWASIEKYLDEK
FT EEIPPEIGERIKRLQADEDRIYANLKSEKAQPEDLDGKWYCGNRFEDCVFRADRAYAMA
FT IHSIYDIDLSDLANALEEKRIKVMSGTFLFSVDLLLGKKSGTLPTMDGFFEVEDGYVKY
FT GFHNDTNPGYKHNLNQLMKYLTKTFVVAKGGTIYYLELTEQRGDVMFFTMTDATEARMN
FT GVVADESFKCIPIDNKDEVVFPIFEVDQKTDALVFSEILLSRDFVQRAIEYTGRLKPAQ
FT LTSDNVNTYLTSTNNTIIIGGSSKKNATKVDATLIQQITTTLIVWTELMNQRQKRVLEK
FT LRMQMKDDVDFMTLAHATFLKMFGKVSYYQRALRCFANWISYVHGADAIQFRNVPLYAE
FT VTDRIKLWKNYAPNQGFVLDLEELDVKIKLHEITEREKRDVSRCIVSGKLGELSSVDNT
FT ECGAVLDGKDYKDSRRKTTFEDLLDGEVATNFLDNWCDKTDHFNFSRSDAVSKYAWGMK
FT LLKGVWEFLLPPLHFAPVYVDAEQARIRLNAEIVTVVEHAVTESNVGLTGVEKAEFADA
FT MSFLVGAAKHLEKRKEVAQQAVVEAVEAVRELRKVHSPADVCNAVDLWSAFEKDLDDDD
FT ETGTTATIVEKGKAVCDDDVQVVLCGSSSTSSVEEVSKEAELFVETIESQASSVTETSD
FT VTTEVAASSSDESVMSEVPEKSWASVAEDESDDSYYLRSMIISDKVQKSALPKRPDFSK
FT YSTLQQKAKQEALWYLQCKIVSDRTTLRSIIDDHLRGMFHNGNCELPKDSAFLDYTVDN
FT CGTWMYGKPSRPGHSYGVGFSLDTKQRITKCELVKLMWNRDCRGQMNQKPVNTRAFQYL
FT LLSDLSFMMNELVIYRNLQQVVKKKERTKQARITLRDGVPGCGKSTWILNNANPMKDMV
FT LCVGKEATEDLKEKFMKKHKCAESDLKRIRTVDSFLMHDYDKFRAATVHFDEALMAHAG
FT IVYFCADILGAKKVICQGDSQQIPFINRVESITLQYAKLAIDETEYVRLTYRSPVDVAH
FT YLTKKSWYSGGRVTTKNSVLRSMKVVGPRDAKPMTSVHCVPYHRDAQYLTFTQSEKADL
FT YKALRAKGPVEVNTVHETQGKTFDDVIVVRLKTTENEIYPGGRKGQPYEIVATTRHRRS
FT LVYYTAIEDRLFEDISDMQDVMESKLMKNLCSELTK"
FT CDS 5653. .6636
FT /codon_start=1
FT /db_xref="SPTREMBL:Q06360"
FT /product="37 kDa protein"
FT /protein_id="AAA48493.1"
FT /translation="MGSQDVKGDSYESVYNKILDMQSEPGGANDLRTNRQRSFNIENRY
FT VEKALTQPGVVTKMQDAWTNWTKTNKEEGTPYNMSYSCVLLNVIPTVPMGYAGTVEVSL
FT LDSGLSPLENVIPDQTQMMELGKGPHVMCFFMHYSIPLNDKGRAVKLAFKIDAEMASKG
FT MSVMNVYSYWTQRQGHLSAYSEPQRSTISKLMLGYDKSLKMKTRNDVRRFVGRSLSLHN
FT QEQSVPALLPGQINVMKENVPLYRKESVIDLTREEREKAAQLEMLRKTREVHTQRSAEE
FT MKRRQAELAKDTQRKLAEEAKAVTEKRKNMAGVNSSNIKFGNFDSV"
XX
SQ Sequence 7099 BP; 2032 A; 1219 C; 1837 G; 2011 T; 0 other;
L07937 Length: 7099 December 21, 2001 15:46 Type: N Check: 872 ..
1 gtatttcttt cctcttacgt cgttagacaa agtaaggtgt ttggagtact
51 tgtggtaata caaaggcacg cttcggcgat aaatcctttg tcttcaccac
101 tatgccgatc gacagcagtt caattctggg gatcataagc gaggaggacg
151 tgatcagggc agctatcagt actagtgcga ctaaatttgg ttctcagttg
201 cacagtactg tttgtgatca tgtgaaggag acttatttgg atgcggttga
251 aagacaaaaa gtaaaaaaga aaatagatgt gcgaagagat ctttcgcagg
301 agcaattaca attgttgaac gatttgtatc ctgagagaca catcgtttcc
351 agcaactgtg aacgtggcac acatagtttt gccgcagctt cgagaaagat
401 tgaaacggat ttgttgctga gcaggattcc aaaaaggtca tgggtatatg
451 atattggtgg caactgggca actcatgtta agcgcaatga tggaaggaaa
501 gtgcattgtt gctgtcccac cgttgacata agggactcgg ccaggaagac
551 tgtgagatgg gcatctattg aaaaatattt agatgagaaa gaagagattc
601 cacctgagat aggagagcgt ataaaacgtt tgcaggccga cgaagacagg
651 atatacgcta acttgaaatc agaaaaagca caacctgaag atcttgatgg
701 aaagtggtat tgtggtaaca ggttcgagga ctgcgttttt cgcgcggaca
751 gagcttatgc gatggctatc cacagcatat atgacatcga tttgtctgat
801 cttgccaacg cgttggagga gaagcggatc aaggttatga gtggtacgtt
851 cttattctca gtggatttgc tgttgggaaa aaagagcggt actttgccga
901 cgatggacgg tttctttgaa gttgaagatg ggtacgtgaa gtatggtttc
951 cataacgata cgaatccagg atataagcac aatcttaatc aactcatgaa
1001 atatcttacc aagactttcg tcgttgctaa aggtggtacc atttactact
1051 tggagcttac agagcagagg ggcgacgtga tgttctttac tatgacagac
1101 gctactgagg cacgtatgaa cggtgttgtg gcagacgaat ctttcaaatg
1151 cattccgatt gataacaaag atgaagttgt gttcccaatt ttcgaagtag
1201 atcagaagac ggacgctttg gtgttttctg agatattact gtcgcgtgat
1251 tttgtccaaa gggcgataga gtacacaggc agattgaaac cggcgcagct
1301 tacctctgac aacgtgaata cgtatcttac atccacaaat aacacgatta
1351 ttattggagg ttcttctaag aagaacgcca ctaaagtgga tgcgacgctt
1401 attcagcaga tcactactac tttgatagtg tggacggagt tgatgaatca
1451 gcgtcagaag agggttttgg agaaactgag gatgcaaatg aaagatgatg
1501 tcgatttcat gacattagct cacgctacgt tcttgaaaat gttcggtaaa
1551 gtgagttact atcagagggc cctgaggtgt tttgctaatt ggatatcata
1601 tgtgcatggt gccgatgcta ttcagttcag gaacgttcca ctttatgcgg
1651 aagtgactga ccggattaag ctttggaaaa attatgcacc aaatcagggt
1701 tttgttctcg atttggagga gctggatgtt aagatcaaac tgcatgagat
1751 tactgagaga gagaagcgcg atgttagcag gtgtattgtt tctggaaagt
1801 tgggtgagct ttcttccgtc gataacaccg aatgcggtgc tgttttggat
1851 gggaaggact acaaggatag cagaagaaaa accacttttg aagacttact
1901 ggacggtgag gtcgcgacca attttctgga taattggtgt gacaaaaccg
1951 atcatttcaa tttctcgcgt agcgacgctg tttctaagta tgcttggggt
2001 atgaagttac tgaagggtgt gtgggagttt ctactgccac cactacactt
2051 cgcgcccgtt tatgttgatg cggaacaagc tagaatcaga ctgaacgcag
2101 aaattgtgac cgtggtcgaa cacgctgtta ctgaaagcaa cgtgggtctc
2151 accggagttg aaaaagctga gtttgcggat gctatgtctt ttttggtcgg
2201 tgcggccaaa catttggaaa agaggaaaga ggttgcacaa caagctgttg
2251 tggaggctgt cgaagccgtg cgtgaacttc ggaaagttca ctcacctgct
2301 gacgtgtgca atgcggttga tctttggtcg gcttttgaga aggaccttga
2351 tgatgatgat gaaactggca caactgcgac gattgttgag aagggcaaag
2401 ccgtgtgcga tgatgacgtt caagtagtgc tgtgtgggag ttcctctact
2451 tcttctgtgg aagaagttag taaggaagca gaactgttcg ttgagaccat
2501 tgaaagccag gcaagttctg tgactgagac gagtgatgtt acaactgaag
2551 tcgctgcatc gagtagtgac gagtcagtta tgagtgaggt tcctgagaag
2601 tcatgggcgt cagttgctga ggacgaaagc gacgatagtt actatttgag
2651 gtccatgatc atttcagaca aggtacaaaa gagtgcttta ccaaaaagac
2701 ctgatttttc aaaatacagt actcttcaac agaaggcgaa acaggaagct
2751 ttgtggtact tgcaatgcaa gatcgtttct gacaggacta cattgaggag
2801 cataattgac gatcatttgc gcggcatgtt tcacaatggt aattgcgagt
2851 tgcctaagga ttcagctttt ttggactaca ctgttgataa ttgtggtacc
2901 tggatgtatg ggaagccgtc gcgtccgggt cacagttatg gtgttggttt
2951 ttcactggat actaagcaac gcattactaa atgtgaactc gtgaaattga
3001 tgtggaatcg ggattgcagg ggtcaaatga accagaagcc tgttaacaca
3051 agggcttttc aatatttgct actgagtgat ttgagtttca tgatgaatga
3101 gttggtcatt tatcgtaatt tgcaacaggt agtgaagaag aaagaaagga
3151 ccaagcaagc tcgtattaca ttgagggatg gtgttcccgg ctgtggaaaa
3201 tctacttgga ttttgaacaa cgcaaatcct atgaaggata tggtgctatg
3251 cgttggtaaa gaagccactg aagatctgaa ggagaagttc atgaagaagc
3301 acaaatgtgc agagtcagat ttgaaaagga tcaggactgt tgactctttc
3351 ttgatgcatg actatgacaa attccgtgct gctaccgtac attttgacga
3401 agcgttgatg gcacacgcag gaattgtgta cttctgtgct gacattcttg
3451 gggcgaagaa agtgatttgc caaggagatt cacaacaaat acctttcata
3501 aatcgtgttg agtcaattac tttgcagtat gcgaaacttg cgattgatga
3551 gacggaatat gtgagactta catacaggtc gccagttgac gtggcacatt
3601 atcttaccaa gaagtcttgg tacagtggcg gtagggttac aacaaagaat
3651 agtgtgttga gatcaatgaa ggtcgtaggt ccgcgtgacg caaaacctat
3701 gacgtcggtg cattgcgttc cttaccatag ggacgcacag tacttgacgt
3751 ttacacaatc tgagaaagcc gatctgtaca aagcgttgcg tgcgaaagga
3801 cctgtggagg tgaacactgt gcatgagaca caaggaaaaa cttttgacga
3851 cgttatcgtt gttagactga agaccactga gaatgaaatt tatccgggtg
3901 gaaggaaggg acaaccttac gagattgtgg caaccaccag gcacaggagg
3951 tctttggttt actacactgc tattgaggac aggttattcg aagatatcag
4001 cgacatgcag gatgtcatgg agagtaaatt gatgaagaac ctctgttctg
4051 agcttactaa atgacggttt gggtcgaagt atgagtctat tttgatatgt
4101 gatagagagg taagggtacc tgacgtagga acccctgtga ttatacagga
4151 tttctatgac agggtattac ctggaaattc cacaatggat tcacacttcg
4201 acgggtacga agtttctact tccgacatta gcatagagct cgaaaattgc
4251 actgtccaac ccaacaaaaa tgttaaggta tggcaagaca agaggggttt
4301 ggtgcctgtt ttgagaactg cgatgcctcc taaaaggcag aatctgcctg
4351 tagaagctat gttagctttg aagaagcgga acatggcagc gcccaagttg
4401 caagaggcag tcaatgaatt tgaggtgatt gagcgaacag tcaatagagc
4451 taaagagatt ttctttgaca cttctctgat tgatgattct gaggtttcta
4501 ctagggaatc taatttgaga tggtggaaga ggcaatcgac tacagcgaaa
4551 gctcaactga aaaaagaaac aaggctgctg catgagttgg atttgtgcta
4601 ctacaattat tgcattaagg gtgatgagaa accaaagatg gacagatctc
4651 cgcaacacga gtacggtgct ttgcaaactg tggtatttcc cgataagatt
4701 gtcaatgcgc tttttggtcc tgctatgaag gagatcaatg aacggatacg
4751 tttggctttg aaaccacatg ttgtgtataa ctccagaatg aatgctgaag
4801 agttaaatcg tacggtggag tttttggatc cagaagaaga tttcaatgct
4851 tttgaaattg atttttcgaa attcgacaag tcaaaaactt cactgcatat
4901 tagggctgtg attgagcttt acaagttatt tggtttgaac gacttgttcg
4951 cccttttgtg ggaaaaatcg caatgccaga cgaaaatcag agactttgtc
5001 aatggcataa cggcttattt gttgtatcag cagaaatcag gcaattgtga
5051 cacttatggt tctaacacct ggtctgctgc tttggctttg ctggaatcca
5101 tgcctttgga gaaggctaaa ttcatgattt ttggtggtga tgattcactg
5151 atacttttcc cgaaacattt gacaattgaa gatccatgta gacgtctggc
5201 gtctttgtgg aatttcgact gcaaactttt cgatttcaaa cataatatgt
5251 tttgtggaaa gtttctgctg aaagtgggtg atagattcaa gttcgcacct
5301 gatcctatga agttgattac gaaattaggt cgcaaggaca ttgttgacgg
5351 acgattgttg tcggaaatct ttgtttccgt tggtgacaac taccgttctt
5401 atcgcgacta tcgtattttg gagcagttga cttatgctct tcgtgagagg
5451 tacaggacca ctgaagatcc gactgctgca ttggtggctt tgaagaagta
5501 tatcttcgat tttaagctat gggctagtat gtttaattat aagggtgagt
5551 ttgttgagtg tagggtggat aggaactttg aatggtaatt cgccgttcct
5601 agttgttttt tatactacat ctttacttct tttccttgta atttgtgcag
5651 acatgggctc acaggatgtc aaaggtgatt cttatgagag tgtttacaac
5701 aagattttgg atatgcagtc tgaacccggg ggtgcaaatg atttgcggac
5751 taatcgtcag aggagtttta atattgaaaa tcgttatgtg gaaaaagcgc
5801 taacacaacc gggtgttgtt actaaaatgc aggacgcgtg gaccaattgg
5851 actaagacta ataaggagga aggtactcct tacaatatgt cttacagctg
5901 tgtgttgctg aatgttatcc ctactgtacc gatgggctat gctggtactg
5951 tagaggtctc attactggat tcgggcctgt caccacttga aaatgttatt
6001 ccggatcaga cacaaatgat ggagctggga aaaggtccgc atgtgatgtg
6051 tttcttcatg cattacagta ttccgttaaa tgataagggc agggctgtga
6101 agctagcttt taaaattgat gcggaaatgg catccaaagg tatgagtgtt
6151 atgaatgtct attcctactg gacgcaaagg caaggtcact tatctgcata
6201 ttctgaaccc caaaggtcta caatttctaa attgatgttg ggttatgata
6251 aaagtctgaa gatgaaaact aggaatgatg tcaggaggtt cgttgggagg
6301 tctctctcct tacacaatca ggaacagtcg gttccggctt tactacctgg
6351 gcagattaac gttatgaaag agaacgtgcc actgtaccgt aaggaaagtg
6401 tcatcgatct tactcgggaa gaaagggaaa aagctgcaca gttagaaatg
6451 cttagaaaga cgcgggaagt tcatactcaa aggagtgctg aggaaatgaa
6501 aaggcgtcaa gcagaactcg cgaaggatac ccaacgtaag ttggctgagg
6551 aagcaaaggc tgtcacagag aagcgtaaga acatggctgg tgtaaattct
6601 agtaatatta agtttggtaa ttttgatagt gtgtagctat gtacagttat
6651 ctgtttacgt gtaactatat attcctttcg gtctctataa catgttctgt
6701 gtgttatata tacgtatatt ggtgtatatg tattttattt tcacattttg
6751 tatttgtgtg taaatgcaaa atagtctaat ttgtcgggct gagacaaatc
6801 gtggtcagta cgataactga taccgcctga ttagcggtct acaagttaat
6851 cgaacctatt tgctcgggtt gagtgcaaac gcggtcattg cgataaatga
6901 ctctgttgat caaacagaaa taaattgatt acgctgtaca gtgcgttaaa
6951 ctgtacatct atcctttagc tggtgttgat gtaattgaaa aaagatcaac
7001 atttagcgat gatgaggagc gacaggtagt cgcggctgct atgacacagc
7051 agttaagagg ggttcaaatc ccccccgaac cggagggtta tccggccca