Sequence of DPV Soil-borne wheat mosaic virus
Soil-borne wheat mosaic virus (SBWMV) complete RNA 2 segment: 84 kDa readthrough protein, 19 kDa capsid protein and 19 kDa cysteine-rich protein genes, complete cds.
ACC No: L07938
Dated: 2000-03-04 | Length: 3593 | CRC: -831426981
!!NA_SEQUENCE 1.0
ID WMORNA2A standard; RNA; VRL; 3593 BP.
XX
AC L07938;
XX
SV L07938.1
XX
DT 25-MAR-1993 (Rel. 35, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 7)
XX
DE Soil-borne wheat mosaic virus (SBWMV) complete RNA 2 segment: 84 kDa
DE readthrough protein, 19 kDa capsid protein and 19 kDa cysteine-rich protein
DE genes, complete cds.
XX
KW 19 kDa capsid protein; 19 kDa cysteine-rich protein; 84 kDa protein;
KW readthrough protein.
XX
OS soil-borne wheat mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RP 1-3593
RX MEDLINE; 93303914.
RA Shirako Y., Wilson M.A.;
RT "Complete nucleotide sequence and organization of the bipartite RNA genome
RT of soil-borne wheat mosaic virus";
RL Virology 195:16-32(1993).
XX
DR SPTREMBL; Q06388; Q06388.
DR SPTREMBL; Q06392; Q06392.
DR SPTREMBL; Q89250; Q89250.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3593
FT /db_xref="taxon:28375"
FT /organism="soil-borne wheat mosaic virus"
FT /strain="US-Nebraska, 1988 wild-type"
FT CDS 334. .2598
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89250"
FT /note="opal suppression"
FT /transl_except=(pos:862. .864,aa:OTHER)
FT /product="84 kDa readthrough protein"
FT /protein_id="AAA48495.1"
FT /translation="MAVNKGYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT
FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG
FT EGAQTRNAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS
FT FEAKYNLKWEGSSXRDGVSGKLRAQIVEEFQNRLIIADDLGIFPRRDVDGVIIRNEPEV
FT VYSELEDKLLSFESSVYHPKAVTVEFEVPVATGTTTTDDEITTEDVEMVIVTEVLVDDE
FT SDYYWLYFVLLLTSFLITCFILLSRRFIHFLGNRGGPGAPLCRRFATRLWSIRLWLLRK
FT ATRRYGNLGVVRKTHSQTTMRKYLRDYNFQLEEWETAIGCTPREALIVADQHILVRAVQ
FT RIVDSVGDVDSVDAVRKVFNGYKVRNFKIEKWLNKQTVNSALAVLNDSTVPENVVLSEG
FT MLSLQTATFEEVLRCNVESQRESAYFNELIALQFAFRLVGTPEFSDFVLAYKGPAYPCY
FT VEAINRHGTCIIQHHVDEDQKRKNDRAIEWLLMAGQGAFVVSSVVTTGVVVFKIHKWLK
FT QRLLLRALSMLPSVGGGGNGGGGGSLPPQALELFDRAGTFEERLAALQNGLDLSPENME
FT VFTPEELKTEIRHVVQAYADSSYHVADEPYLRGVGVTVVTGLPEAVGEITTTGSEVSSV
FT DTSISLGVPGRARRRAVSKNTRMYPSTSGQSYNSYKSPRVSGKSGVGSMKMKIASKPMA
FT S"
FT CDS 334. .864
FT /codon_start=1
FT /db_xref="SPTREMBL:Q06388"
FT /product="19 kDa capsid protein"
FT /protein_id="AAA48494.1"
FT /translation="MAVNKGYTGYNKELNAMAATHAYIRLSTLMSQIESWQATRASVLT
FT HLGVMLNGVSKLGERSFFSRTKRFGAHTSDGDEIFCDLGGEAVTQILSRLTVALQSARG
FT EGAQTRNAKRGAAPGTSQVENEEQGQTDQTLAISNAVAELMIFVRTKDFTMNECYTQDS
FT FEAKYNLKWEGSS"
FT CDS 2665. .3189
FT /codon_start=1
FT /db_xref="SPTREMBL:Q06392"
FT /product="19 kDa cysteine-rich protein"
FT /protein_id="AAA48496.1"
FT /translation="MSTVGFHTCASCVDGPKSIKCVSKYRISVYKTLGLDVVKCRLPAD
FT CGVNCGMPAAFVLEQGHPKLTMDGYCGEKHRGYVLSGAWRHAQLRSLNAELDTLEAREE
FT SLRAQIKALSAGDHCPAVLAYVPKKLTKLKAEVHDVTGKKQVCITGLVDVMDSALVRLA
FT PDSPPKKISSL"
XX
SQ Sequence 3593 BP; 910 A; 693 C; 921 G; 1069 T; 0 other;
L07938 Length: 3593 December 21, 2001 15:46 Type: N Check: 1494 ..
1 gtatttcttc ttcacatacg acaagtgtta acttgttccg tgagatttta
51 ccattcttcc ctgagtgaga attaaaataa actttggatt gctacttgga
101 tgaaacttgg agtttcactt gtctctcgtt accataggca cgctttaacg
151 cgataaatcc taggtaatca gcggggagga aactagtcgt ctctttcaag
201 tggtatcggt gcgctggata agtttgctag actcaaagac caggtggacc
251 tgtcgctgca gaaagcagct ggtaaagtga ctgctgaatc taccggacca
301 ttattgccaa aggttactac accattgcca gttatggcgg taaataaagg
351 ttacactggt tacaacaaag agcttaacgc gatggctgcg actcacgctt
401 acataagact cagcactttg atgagtcaga ttgaaagttg gcaggctacg
451 agggcgagtg tacttacgca cttaggtgtt atgcttaatg gcgtgagtaa
501 attaggtgaa cgaagtttct tctctaggac taaacgcttt ggagcgcata
551 cttcagacgg tgacgagatt ttctgcgatc taggaggaga agcggttacg
601 caaatccttt ctaggttgac agttgctctt caatccgcta gaggtgaagg
651 tgctcagacg agaaacgcta agaggggagc tgcacctggc actagtcaag
701 tagagaatga agaacagggt cagaccgatc agactcttgc tatttctaat
751 gcagttgctg agttaatgat ctttgtgcgt acgaaagatt ttactatgaa
801 tgaatgctat actcaagact cttttgaggc taagtataac ttgaaatggg
851 aaggttcgag ttgacgggac ggcgtctcgg gaaagttgag ggcacaaatc
901 gttgaagaat ttcagaatcg actcataatt gctgacgatt tgggcatctt
951 tccgagacgc gatgttgatg gtgttatcat tcgtaacgaa ccagaggtag
1001 tttattcgga gctagaagat aagttactga gcttcgaaag ttctgtctat
1051 catcccaaag cggttactgt cgagtttgaa gttcctgttg ctacagggac
1101 tacgactact gatgatgaga tcactactga agatgtggag atggtaatag
1151 tcactgaggt gctcgtcgac gacgaatctg attactattg gctgtacttc
1201 gtactgctgc tcacatcttt tctcataacg tgtttcattc tcctttcgag
1251 gagattcatt catttccttg gcaaccgagg gggtcctggt gcaccattgt
1301 gtagacgctt tgctacaaga ctttggtcca ttaggttgtg gttgttaagg
1351 aaagcgacca ggcgctatgg caatttaggc gtcgtgcgaa agactcactc
1401 tcaaaccaca atgcgtaaat atttgaggga ttacaacttt caacttgaag
1451 agtgggaaac agctattggt tgtactccca gggaggcgtt gatcgttgct
1501 gatcagcaca ttctggttcg tgcggtgcag cgcattgttg attcagtcgg
1551 tgatgtcgac agtgttgatg cggtaaggaa ggtttttaac ggctacaagg
1601 tcaggaattt caaaatagag aaatggttga acaagcagac tgtgaattcc
1651 gctttggcag ttttgaacga ctcgactgtt cctgagaacg tggttttaag
1701 tgaaggcatg ttgtctttac agacagccac ttttgaggaa gtgttgcgtt
1751 gtaacgttga gtcgcagaga gagagtgctt attttaatga gcttatcgct
1801 ttgcaattcg cgtttcgact tgtaggtacg ccagagtttt cggactttgt
1851 gcttgcttac aaaggtcctg cttatccttg ttatgtcgaa gctataaacc
1901 gtcatggtac ctgtattatc cagcatcatg tcgatgaaga tcagaagcgg
1951 aagaacgaca gagcgattga gtggttgctg atggccggtc aaggcgcctt
2001 tgtcgtttct tcagtcgtga ctacgggtgt tgtagtgttt aagatacaca
2051 aatggttgaa acaacgccta ctgcttagag cattgtcaat gttgccttct
2101 gttggtggtg gaggcaatgg tggtggaggt ggttctttac cacctcaagc
2151 cctcgagctc tttgatagag ccggtacatt cgaagaacgt cttgctgctc
2201 tacagaatgg tcttgatttg agccctgaaa acatggaagt gtttactccc
2251 gaagagttga aaactgaaat acgacatgtt gttcaggctt atgctgatag
2301 ttcttatcac gttgcggacg aaccgtacct tcgtggtgtt ggtgtcactg
2351 tggtcactgg cttgccagag gctgttggag agatcactac cacgggtagt
2401 gaagtcagta gtgtggatac gtccatttct ttgggcgtac ctgggcgtgc
2451 acggaggcgc gcggtttcga aaaatacacg catgtatcct tcgacaagtg
2501 ggcaatcata taatagttat aagtcaccta gggtaagtgg taaaagtggt
2551 gttggtagta tgaagatgaa aatcgctagt aagcctatgg cgtcctaacg
2601 tgttgttttt aatactactt caccaatcac acactacttt ctgggctact
2651 tgtttatctc cattatgtct actgttggtt tccacacttg tgcgagttgc
2701 gttgatggac ctaagtctat taaatgtgtt agtaagtatc gtattagcgt
2751 gtacaagact cttggtcttg atgttgttaa gtgtcgtctt cctgcagatt
2801 gtggcgttaa ttgtggtatg cctgcggctt ttgttttaga acagggtcat
2851 cctaagctta ctatggacgg ttactgtgga gagaaacaca gaggttatgt
2901 tctatctggt gcgtggcgtc atgcccaact ccgctctctc aatgctgaat
2951 tagatacctt ggaggctaga gaagagtctc ttcgagctca gattaaagct
3001 ctcagcgctg gcgatcattg tcccgctgtt ctcgcatacg tccccaagaa
3051 actgactaag ttgaaagcgg aggttcacga tgttactgga aagaagcagg
3101 tgtgcattac gggtttagtt gatgtaatgg attctgcgtt ggtgcgtttg
3151 gcacctgact caccgccaaa gaagatatcc tctttgtgat gttctatgtt
3201 ctcgtcttgt tgttttctta ttgctagttt gtgtctactg gagtaggtaa
3251 ccaggataaa gaacccgaac gaaaatcttg caaaaatatt tattactaat
3301 ataaataaat gggcaagtct gtcactttgg ctatcagagt tatcatactc
3351 tataaactat gacgtggtct tcacgataga agatggtgct tgttatttca
3401 cctaaatcga aataacgaaa gggcgttcta cagtacgttt aaactgtagg
3451 ttccaacctc tagttcctat tgatgtaatc gaaaaaagat caatgggtaa
3501 ttatgatgag gtgcgactgg tggtcgcggc tgctatcaca cagcagctag
3551 gaggggttca attccccccc catccggagg gttatccggc cca