Sequence of DPV Cardamine chlorotic fleck virus
Cardamine chlorotic fleck carmovirus genome, replicase, coat protein, p8 protein, and p9 protein genes, complete cds.
ACC No: L16015
Dated: 2005-04-17 | Length: 4041 | CRC: -1958271027
!!NA_SEQUENCE 1.0
ID CDKCG standard; genomic RNA; VRL; 4041 BP.
XX
AC L16015;
XX
SV L16015.1
XX
DT 04-JAN-1994 (Rel. 38, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Cardamine chlorotic fleck carmovirus genome, replicase, coat protein, p8
DE protein, and p9 protein genes, complete cds.
XX
KW coat protein; complete genome; p8 protein; p9 protein; replicase;
KW viral genome.
XX
OS Cardamine chlorotic fleck virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4041
RX MEDLINE; 93389449.
RX PUBMED; 8376969.
RA Skotnicki M.L., Mackenzie A.M., Torronen M., Gibbs A.J.;
RT "The genomic sequence of cardamine chlorotic fleck carmovirus";
RL J. Gen. Virol. 74(Pt 9):1933-1937(1993).
XX
RN [2]
RP 1-4041
RA Skotnicki M.L.;
RT ;
RL Submitted (11-MAY-1993) to the EMBL/GenBank/DDBJ databases.
RL M.L. Skotnicki, Molecular Evolution and Systematics, Research School of
RL Biological Sciences, Australian National University, Canaberra, A.C.T.
RL 2601, Australia
XX
CC On Oct 22, 1993 this sequence version replaced gi:409253.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4041
FT /db_xref="taxon:31711"
FT /mol_type="genomic RNA"
FT /organism="Cardamine chlorotic fleck virus"
FT /isolate="CCFV-CL"
FT CDS 38. .2359
FT /codon_start=1
FT /db_xref="GOA:Q65987"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q65987"
FT /note="readthrough of stop codon at position 779-781"
FT /transl_except=(pos:779. .781,aa:OTHER)
FT /product="replicase"
FT /protein_id="AAB02616.1"
FT /translation="MDALLPEFLAHKLSRLVLKCFGIGSDEEAPQQIFVGEFPVWGGEI
FT VPPQPEELNQLVIPRKWVRSIGSSLNRVVLPPSSGVVASLEENCVAPFEEASVEQLEPA
FT SGDTGDLPRRKIRRRGRFVAHAVCAAKLHFSGCPTQTLANRLAVSKWLVQYCTERNVIP
FT SHTRIAVQEALPQVFLPDGHDLKEVLDLHTEEAHDRRNALRKRGRHVRRWWVQLAMHPM
FT TGRSWLRAWRRLTGLPDDVAVQFVRXGCLRELVGRETAISRGEHPAMRVFPLAQPPKIR
FT RIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKELKPAPQPLPDAFAKLSGI
FT RRKLVKLAGNHTPILREDYSKLYKGRRATIYQNACESLADRACTQGGSAELKTFVKAEK
FT INFTAKKDPAPRVIQPRDPRYNIEVGKYLKCYEHHLYRAIDKMWCGPTVLKGYNVEEIG
FT NIMSDAWNQFQKPCAIGFDMKRFDQHVSVDALKWEHSVYNASFNCPDLAKMLTWQLKNK
FT GVGRASDGYIKYQVEGCRMSGDVNTAMGNCLLACSITRYLMKGIKSRLINNGDDCVVFF
FT ESGDMHEVRERLCRWIDFGFQCIAEEPQYDLEKVEFCQMSPIYDGEGWVMVRNPRVSLS
FT KDSYSTTQWGSVRDAASWLASIGECGMAIAGGIPIVQSYYNCLLRNFKHLARNTSKKKL
FT DVSFNSGFSMLAQNGNRGSKEVSEAARYSFYVAFGYTPDEQRGLEGYYDNLALEAAWDP
FT EGYDETLLNRWIINPSLTTP"
FT CDS 2326. .2541
FT /codon_start=1
FT /db_xref="GOA:Q65988"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q65988"
FT /product="p8 protein"
FT /protein_id="AAB02617.1"
FT /translation="MDNQSESDNSVKRRSGKKVNKQVRGSEKSATKRSVASHAARSFSQ
FT RPSGDSAGGNWVLVADKIEVSISFNF"
FT CDS 2438. .2722
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q65989"
FT /product="p9 protein"
FT /protein_id="AAB02618.1"
FT /translation="MQLARSVNAHLAILLGVIGFWLLIRLKFQYPSISDQLPVPSPWVK
FT YLILSSFNSLSLVLLLCHLIPDIKPAVTYYNTTDNTKSQHISISTANGN"
FT CDS 2712. .3767
FT /codon_start=1
FT /db_xref="GOA:Q65990"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q65990"
FT /product="coat protein"
FT /protein_id="AAB02619.1"
FT /translation="MAIKEDPRLVKMASLGVPWAVKVTTKGWGSLTTKQKIAARAALQI
FT PMRVTKQPTPKVVRVSAPAAVSYREVTGAPRVTTAGKVLTHTASELITTLKKNTSLEPK
FT YVEAIVNPSRVGTFNQLPDIAASYEKYKFTSLRFRYSSTCPTSTGGKVALAFERDAANP
FT LPDNLTAFYNLEGNTSSNPRDSFVLTVPCDNVARFVADGGSDPKLVDFGKLLAASYGQG
FT EGDANGLGEIHIEYTVQLYNRLGSAQRSQIGSLDGKFLGPRLVEVTSGKSDKGTKFTFS
FT FHGCGLIPILWLAKPRWPLTAGSAVACEVLGQSGDDSVQWAGIRISEREQTVEFEHTET
FT TPEAKWSVSRL"
XX
SQ Sequence 4041 BP; 1073 A; 976 C; 1082 G; 910 T; 0 other;
L16015 Length: 4041 May 10, 2005 10:09 Type: N Check: 9340 ..
1 ggttttccac gaaatccaat tcttcttctc aaccctcatg gacgctcttt
51 taccggagtt tctcgcccac aagctttcgc gtttagtgct caaatgcttt
101 ggtataggta gtgatgagga agcaccccag caaatctttg taggggaatt
151 ccccgtatgg ggtggggaaa tagtcccccc ccaaccggag gagctgaatc
201 aactagtcat tccccgtaag tgggttaggt caataggaag tagtcttaat
251 agagtagtct taccaccctc tagtggggtt gtcgcctccc ttgaggagaa
301 ctgtgtggca cctttcgagg aagctagcgt agaacagtta gaaccagcta
351 gtggtgatac tggtgacctc cctaggagga agataaggag acgagggcga
401 ttcgtcgcgc atgcggtgtg tgctgcaaag ctgcacttca gcggttgccc
451 tacgcaaacg ctagccaacc ggttggcggt gtcgaaatgg ctggtgcagt
501 actgcactga aagaaatgtt atacccagcc atacgagaat agctgtgcaa
551 gaggctcttc cacaggtttt cctgcccgat gggcacgacc tgaaggaagt
601 tctggacctt catactgaag aggcccacga caggcgaaac gcgctccgca
651 agcgaggcag gcacgtacgt cgatggtggg ttcaattagc aatgcacccc
701 atgactggca gatcatggct acgggcgtgg aggaggctta ccggccttcc
751 cgacgacgtg gctgtgcaat ttgtccgcta ggggtgctta cgggaattgg
801 ttgggcgaga gactgctatc tctcgggggg aacacccagc catgcgcgta
851 ttcccgttag cacagccccc caaaatacga cgcatcttcc atatctgtgg
901 aatgggcaat ggtttagact ttggagtcca caacaactca ctcaacaatc
951 tgagaagagg tttgatggaa cgagtctttt acgtcgaaga tgcgcagaaa
1001 gaactgaaac cagcccccca acctctaccc gacgcgttcg ctaagcttag
1051 cggaattcgg cgcaaattgg tgaagcttgc tggaaatcat acccctatcc
1101 ttagagaaga ctactctaag ttgtataagg gcaggagagc aaccatctac
1151 caaaatgcgt gcgaatcatt agctgatcga gcgtgtacac aaggcgggag
1201 cgctgagctt aaaaccttcg tcaaagctga gaagattaat tttacggcga
1251 agaaggatcc ggcacctagg gttatccaac ctagggatcc tagatataac
1301 atagaggtag ggaaatatct gaaatgctac gaacaccatc tttacagagc
1351 aattgataag atgtggtgtg gtccgacagt gttgaaaggt tacaatgttg
1401 aggagatagg gaacataatg tcagacgctt ggaaccaatt ccagaaaccg
1451 tgtgctatag gctttgatat gaagagattc gatcagcacg tttctgtaga
1501 tgccctcaaa tgggagcata gcgtctacaa tgccagcttt aactgtcccg
1551 atttggccaa gatgctaacg tggcagctga agaacaaggg cgttggtagg
1601 gcttccgatg gatacatcaa gtaccaggta gaaggatgta gaatgtcagg
1651 tgatgtgaat acagctatgg ggaactgtct cttggcttgt tccatcactc
1701 gttatctaat gaaggggatt aagagcagac tgatcaataa tggagacgac
1751 tgtgttgtgt tctttgagag tggcgatatg catgaggtac gtgaaagact
1801 gtgccgttgg atcgatttcg gattccagtg catcgccgaa gaaccgcagt
1851 acgaccttga gaaggtagag ttttgccaaa tgtcacctat ttatgatggc
1901 gagggatggg tcatggttag gaacccccgt gtaagcttat ccaaagacag
1951 ctacagcacg acacaatggg gcagcgtcag agacgcagcc agctggttgg
2001 catctatcgg agagtgcggc atggccattg caggtggcat accaatcgtg
2051 cagtcatatt acaattgtct gctaagaaat ttcaagcatt tggcgcgaaa
2101 tactagcaag aagaaattgg atgtttcctt taactcggga ttcagtatgt
2151 tggcccaaaa cggcaatcgg gggtccaaag aggtttctga agcagctcgg
2201 tactcatttt acgtggcttt cgggtacacc cctgatgaac aaaggggact
2251 cgaaggctac tatgataatc tggcgttaga agcagcatgg gaccccgagg
2301 gttatgatga aaccctactg aatagatgga taatcaatcc gagtctgaca
2351 actccgtaaa gcgaagatct gggaagaagg tcaataaaca ggtgcgagga
2401 agtgagaaga gtgcgacgaa gaggtcggtg gcgagccatg cagctcgctc
2451 gttcagtcaa cgcccatctg gcgattctgc tgggggtaat tgggttctgg
2501 ttgctgataa gattgaagtt tcaatatcct tcaatttctg atcagttgcc
2551 ggtgccgtcc ccctgggtta aatacctaat cctaagcagt ttcaactctc
2601 tctctctcgt cttactcctc tgtcatctga tacctgacat caaaccagca
2651 gtaacatact acaacaccac tgacaacaca aaaagccaac acatctcgat
2701 cagcaccgca aatggcaatt aaggaggacc caagattggt aaaaatggca
2751 tcgctaggcg tcccttgggc agtgaaggtt acaacgaagg ggtggggctc
2801 tctcaccact aagcagaaga ttgcagcacg agctgcgttg cagataccca
2851 tgcgcgtgac gaagcagcct accccgaagg tggttcgtgt gagtgctccc
2901 gccgcggttt cataccgtga ggtcacggga gctccacgag tcactacggc
2951 tggtaaggtg ctgacacaca ctgcaagtga actcatcacc acgctgaaga
3001 aaaacacctc actggagccg aagtatgtcg aagcgatcgt caacccaagc
3051 cgggttggca catttaacca actccccgat attgcggcgt cgtacgaaaa
3101 atacaaattc acctcactca ggttccgcta ctcgtccacg tgccctacct
3151 caaccggagg aaaggtcgcg ctagcgtttg agcgtgacgc tgccaacccg
3201 ctacctgaca acctgactgc gttctacaat ctagaaggca acacctccag
3251 caacccaagg gattccttcg ttctgaccgt gccttgcgac aatgtcgcga
3301 ggttcgtggc agacgggggc agcgacccga agctagtcga tttcggcaag
3351 cttctggctg catcctacgg gcaaggggaa ggtgacgcca atggactggg
3401 agaaatccac atagagtaca cagtccaact atacaaccgc ctaggttccg
3451 cccagagaag ccaaatcggc tctctcgacg gcaagttctt gggaccgagg
3501 ctggttgaag ttacgtcagg aaagtcagac aaaggcacca aatttacctt
3551 cagcttccac gggtgtggtc ttatacctat cctgtggtta gcgaagcccc
3601 gttggcccct cacagcagga tccgcagtcg cttgcgaggt cctcggccaa
3651 tcgggagatg atagtgtgca atgggctggt ataagaatca gcgaacgtga
3701 gcagacagtt gaatttgaac acactgagac aacaccagaa gccaaatggt
3751 ctgtgtctcg cctgtaaagt aagtagccta acctgctgca gcaggaagta
3801 ttctaggtag tatagtaact ctttcttcaa cttcttactt agaaaaacac
3851 aaaaataccc ccagctcgct tttgttttga gctgtgttag ggaccaaaaa
3901 cggcgactca tccgtcctga gtggcctctg gtgtggaaac cagagagtct
3951 tgcggtaacc aacgaaatct cttcggagtg ggtgttgggg accaccaaat
4001 gaagaaaata gcccctccct cgcgcagggg ggggccagcc c