Sequence of DPV Sin Nombre virus
Sin Nombre virus (NM R11) RNA L segment encoding RNA polymerase (L protein), complete cds.
ACC No: L37902
Dated: 2000-03-04 | Length: 6562 | CRC: -317030562
!!NA_SEQUENCE 1.0
ID SNVRPLA standard; RNA; VRL; 6562 BP.
XX
AC L37902;
XX
SV L37902.1
XX
DT 27-SEP-1995 (Rel. 45, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 3)
XX
DE Sin Nombre virus (NM R11) RNA L segment encoding RNA polymerase (L
DE protein), complete cds.
XX
KW viral RNA polymerase (L protein).
XX
OS Sin Nombre hantavirus
OC Viruses; ssRNA negative-strand viruses; Bunyaviridae; Hantavirus.
XX
RN [1]
RP 1-6562
RX MEDLINE; 96079073.
RA Chizhikov V.E., Spiropoulou C.F., Morzunov S.P., Monroe M.C., Peters C.J.,
RA Nichol S.T.;
RT "Complete genetic characterization and analysis of isolation of Sin Nombre
RT virus";
RL J. Virol. 69(12):8132-8136(1995).
XX
DR SPTREMBL; Q89709; Q89709.
XX
FH Key Location/Qualifiers
FH
FT source 1. .6562
FT /db_xref="taxon:37705"
FT /organism="Sin Nombre hantavirus"
FT /isolate="NM R11"
FT /lab_host="E6 Vero cells"
FT /specific_host="Peromyscus maniculatus"
FT /map="viral genome L segment"
FT CDS 36. .6497
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89709"
FT /note="putative"
FT /product="viral RNA polymerase (L protein)"
FT /protein_id="AAC42205.1"
FT /translation="MEKYREIHQRVKEIPPGGASALECLDLLDRLYAVRHDVVDQMIKH
FT DWSDNKDMERPIGQVLLMAGVPNDVIQGMEKKVIPTSPSGQILKSFFRMTPDNYKITGA
FT LIEFIEVTVTADVAKGIREKKLKYESGLQFVESLLSQEHKKGNINQAYKITFDVVAVKT
FT DGSNISTQWPSRRNDGVVQHMRLVQADINYVREHLIKPDERASLEAMFNLKFHVGGPKL
FT RYFNIPDYKPQSLCQPEITNLIQYCKHWLTEDHDFVFKEVTGNNVMNSFENNESVYMSR
FT YRESRKPRNFLLIQGSIQGPYLPSTISSDQCDTRIGCLEVLKVHPETPVQAIAVDMAYK
FT YMELNRDEIINYYNPRVHFQATQSVKEPGTFKLGLSQLNPMSKSILDQVGKHKSEKGLF
FT GEPLESINISSQIQQNECSRIIESILSNLEINVGEVTMSLANPRKTTGVDELLGKFYEN
FT ELSKYLISILRKTAAWHIGHLIRDITESLIAHAGLKRSKYWSIHAYDHGGVILFILPSK
FT SLEVVGSYIRYFTVFKDGIGLIDEENLDSKVDIDGVQWCFSKVMSIDLNRLLALNIAFE
FT KALLATATWFQYYTEDQGHFPLQHALRSVFSFHFLLCVSQKMKICAIFDNLRYLIPAVT
FT SLYSGYELLIEKFFERPFKSALEVYLYNIIKALLISLAQNNKVRFYSKVRLLGLTVDHS
FT TVGASGVYPSLMSRVVYKHYRSLISEATTCFFLFEKGLHGNLNEEAKIHLETVEWARKF
FT EAKERKYGDILMREGYTIDAIRVGDVQVEQQLFCQEVVELSAEELNKYLQAKSQVLSSN
FT IMNKHWDKPYFSQTRNISLKGMSGALQEDGHLAASVTLIEAIRFLNRSQTNPNVIDMYE
FT QTKQHKAQARIVRKYQRTEADRGFFITTLPTRVRLEIIEDYYDAIARVVPEEYISYGGD
FT KKILNIQTALEKALRWASGSSEVITSTGNVIKFKRRLMYVSADATKWSPGDNSAKFKRF
FT TQALYDGLSDEKLKCCVVDALRHVYETEFFMSRKLHRYIDSMDEHSEAVQDFLDFFKGG
FT VSATVKGNWLQGNLNKCSSLFGAAVSLLFRRIWAELFPELECFFEFAHHSDDALFIYGY
FT LEPEDDGTDWFLYVSQQIQAGNYHWHAVNQEMWKSMFNLHEHLLLMGSIKVSPKKTTVS
FT PTNAEFLSTFFEGCAVSIPFIKILLGSLSDLPGLGFFDDLAAAQSRCVKAMDLGASPQL
FT AQLAVVICTSKVERLYGTADGMVNSPVAFLKVTKAHVPIPLGGDGSMSIMELATAGIGM
FT ADKNILKQAFYSYKHTRRDGDRYVLGLFKFLMSLSEDVFQHDRLGEFSFVGKVQWKVFT
FT PKNEFEFFDQFSQSYLKSWTNQHPVYDYIIPRGRDNLLVYLVRKLNDPSIVTAMTMQSP
FT LQLRFRMQAKQHMKVCKLEGEWVTFREVLAAADSFATKYNPTEKDLDLFNTLVSCTFSK
FT EYAWKDFLNEVRCEVVPTKHVHRSKIARTFTVREKDQAIQNPITAVIGYKYASTVDEIS
FT DVLDSSFFPDSLSADLQVMKEGVYRELGLDIGLPEVLKRIAPLLYKAGRSRVVIVEGNV
FT EGTAESICSYWLRSMSLVKTIKVRPKKEVLRAVSLYSTKENIGLQDDVAATRLCIEVWR
FT WCKANDQNVNDWLNALYFEKQTLMDWVERFRRKGVVPIDPEIQCIALLLYDVLGYKSVL
FT QMQANRRAYSGKQYDAYCVQTYNEETRLYEGDLRVTFNFGLDCARLEIFWDKKEYILET
FT SITQRHVLKLMMEEVTQELLRCGMRFKTEQVSHTRSLVLFKTESGFEWGKPNVPCIVFK
FT HCALRTGLRTKQAINKEFMINVQADGFRAIAQMDMESPRFLLAHAYHTLRDVRYQAVQA
FT VGNVWFQTAQHKLFINPIISSGLLENFMKGLPAAIPPAAYSLIMNKAKISVDLFMFNEL
FT LALVNPRNVLNLDGIEETSEGYSTVTSISSRQWSEEVSLMADDDIDDEEEFTIALDDID
FT FEQINLDEDIQHFLQDESAYTGDLTIQTEEVEVKRIRGVTRVLEPVKLIKSWVSKGLAI
FT DKVYNPIGIVLMARYMSKNYDFSKIPLALLNPYDLTEFESVVKGWGETVNDRFLEVDND
FT AQRLVREKNILPEDILPDSLFSFRHVDVLLKRLFPHDPVSSFY"
XX
SQ Sequence 6562 BP; 2102 A; 1009 C; 1448 G; 2003 T; 0 other;
L37902 Length: 6562 December 21, 2001 15:46 Type: N Check: 7923 ..
1 tagtagtaga ctccgagata gagaaattca ggaaaatgga aaaatatagg
51 gagattcatc aaagagtcaa ggagattcct cctggggggg cttctgcatt
101 agaatgttta gatttgcttg accgtcttta tgcagtcaga catgatgtag
151 ttgatcagat gatcaagcat gattggtctg acaataaaga tatggaaaga
201 cctataggtc aagttctgtt aatggctggt gtaccaaatg atgtgattca
251 aggtatggag aagaaagtta tacctacaag cccttcagga cagattttaa
301 aaagcttttt ccgcatgaca cctgataatt ataaaatcac aggtgcctta
351 attgagttta tcgaggtaac agtgactgca gatgttgcta aaggtatccg
401 tgaaaagaaa ttaaagtatg agagtggtct tcagtttgtg gagtctttat
451 taagtcaaga acacaaaaaa ggtaatataa atcaagctta taagatcaca
501 tttgatgttg tggctgtaaa gacggatggt tcaaacatat caactcaatg
551 gcctagtcgg cgtaatgatg gtgttgttca acatatgagg cttgttcagg
601 ctgatattaa ttatgttaga gaacatctca ttaagcctga tgaacgtgca
651 tcattagaag ccatgtttaa tcttaagttt catgtaggag gccctaaact
701 gaggtatttt aatataccag attacaagcc tcagtcatta tgtcaacctg
751 agattacgaa tttaattcaa tattgcaagc actggctcac agaagatcat
801 gattttgttt ttaaggaagt cacgggtaat aatgttatga actcatttga
851 gaataatgaa agtgtatata tgtctagata cagggagtct cgtaaaccac
901 gtaatttctt attaattcaa ggttctattc aaggtcctta tttaccatca
951 actattagct ctgaccagtg tgacacaaga attggctgtt tggaggtgtt
1001 aaaagtacat ccagagacac cagtacaagc aattgcagtg gatatggcat
1051 ataagtatat ggagttaaat agagatgaga tcatcaacta ctacaatcct
1101 agagttcatt ttcaagcaac tcagtcagtg aaggaaccag gtacattcaa
1151 attaggactt tctcaactaa atccgatgtc taaatcaata ttggaccagg
1201 ttgggaaaca caagtcagaa aagggccttt ttggtgaacc attagagagt
1251 ataaacatat caagccagat tcaacagaat gagtgttcac gtattataga
1301 atcaatactt tcaaatctcg aaataaatgt tggtgaggta acaatgagtc
1351 tagctaatcc tcgtaaaact acaggtgtag atgagttgtt aggtaagttc
1401 tatgagaatg aactgtctaa gtatttgatc agcatattac gaaaaactgc
1451 agcctggcat attgggcatt taataagaga tataacagaa agtctcattg
1501 ctcatgcagg tttaaagcgg tctaaatact ggtcaatcca tgcttatgat
1551 catggtgggg taatattgtt catccttcct tcaaagtctt tagaggttgt
1601 cggatcttat attcggtatt tcacagtatt caaagatggt atagggctta
1651 tagatgagga aaatttagac tcaaaggtag acatcgacgg tgtgcagtgg
1701 tgtttttcaa aagtaatgag tattgactta aacaggttgt tagctttaaa
1751 tattgccttt gaaaaggcac ttcttgctac tgccacttgg tttcaatatt
1801 acacagaaga ccaagggcat tttccattac aacatgcatt aaggtctgtg
1851 ttctcttttc attttttatt atgtgtttct cagaaaatga agatatgtgc
1901 aatttttgat aatttacgct atttgatccc agctgtcaca tcattatatt
1951 caggttatga gctcttaata gaaaaattct ttgagcggcc gtttaagagt
2001 gccttagaag tatatttata taatataata aaagcattgc ttataagcct
2051 agcacaaaat aataaggtac gattctactc taaagtgcgt cttcttggcc
2101 tcactgtcga tcactcaact gtaggtgcaa gtggagttta tccttcattg
2151 atgtctagag ttgtttataa gcactatcgt agtcttattt ctgaagcaac
2201 aacatgtttc tttctttttg aaaagggcct acacggaaat ctaaatgagg
2251 aggctaaaat acatcttgag actgtagagt gggcaagaaa gtttgaggca
2301 aaagagagaa aatatggaga catattaatg agggaaggtt acacgattga
2351 tgctatacgt gttggtgatg tgcaggtaga acaacaatta ttttgtcaag
2401 aggttgtgga gttaagtgca gaagaactca acaagtattt acaagcaaaa
2451 agtcaggtct tatcatccaa tatcatgaat aaacattggg ataagccgta
2501 ttttagtcag acaaggaata taagtttaaa gggtatgtct ggagcattgc
2551 aagaagatgg acatcttgca gcaagtgtta cgttaattga ggcaattaga
2601 tttttaaata gatcacagac taatccaaac gttattgaca tgtatgaaca
2651 gacaaagcag cacaaagctc aagcacgtat tgtgaggaaa tatcagcgga
2701 ccgaagctga tagaggtttt ttcatcacta ctctcccgac aagagtcagg
2751 ttagaaatta tagaagatta ttatgatgca atagctagag ttgtcccaga
2801 ggaatatata tcatacggag gagacaagaa aattctaaat atacagactg
2851 cattagagaa ggcattacga tgggcttcag gatcatcaga ggtcataaca
2901 agcacaggaa atgtaattaa attcaagagg aggctgatgt atgtgagtgc
2951 tgatgccacg aaatggtcac caggagataa ttcggcaaag tttaagagat
3001 tcacacaggc attatatgat ggcttgtcag atgagaagtt aaaatgttgc
3051 gttgttgatg cccttagaca tgtttatgaa acagagttct ttatgtccag
3101 aaaacttcat cgctatatag attctatgga tgagcattct gaggctgtcc
3151 aagatttcct cgattttttt aagggtggag tgtctgctac agtcaaaggt
3201 aattggctcc aaggtaactt gaacaaatgt tcttcattgt ttggggctgc
3251 agtgtcactg ctgtttaggc gtatttgggc agagttattt ccagaattag
3301 aatgcttttt tgagtttgca catcactcag atgatgccct ctttatttat
3351 ggttatttag agccagaaga tgatggaact gattggtttt tatatgtatc
3401 tcaacagata caggctggta attatcactg gcatgctgtt aaccaagaga
3451 tgtggaagag catgtttaat ttgcatgagc atttactgct gatgggctcc
3501 ataaaggtat ccccaaaaaa gacaacagtt tctcctacaa atgcagaatt
3551 tctttccaca ttttttgaag gttgtgcggt gtcaatccct tttataaaaa
3601 tactgcttgg atcgttatca gatttaccag gattaggatt ctttgatgat
3651 ctggctgctg cacaaagtag atgtgtcaaa gcaatggact taggggcatc
3701 cccacagttg gcacaattag ctgttgttat ttgcactagt aaagttgaga
3751 gattatacgg cactgcagat gggatggtta atagtccagt ggcattttta
3801 aaggtaacga aggcccatgt acccatacct ttaggaggtg atggctcaat
3851 gtctattatg gagcttgcca cagcaggtat aggtatggct gataaaaata
3901 ttctcaagca agcattttat tcttacaagc atacaagacg tgatggggat
3951 aggtatgttt tgggtctttt caagttctta atgtctctta gtgaagatgt
4001 ttttcagcat gatagactag gtgagtttag ttttgttggt aaagttcagt
4051 ggaaggtatt cacacctaaa aatgagtttg aattctttga tcaattttca
4101 cagtcctact taaagagttg gacaaatcaa cacccagtat atgattatat
4151 tatacctaga ggtagggata atcttttagt ctatttagtc agaaaattaa
4201 atgaccctag tattgtcaca gctatgacaa tgcaatctcc attacaactt
4251 agattcagga tgcaggcaaa gcagcacatg aaagtgtgta agcttgaagg
4301 ggaatgggtg acattcagag aagttttagc tgcagcagac agttttgcaa
4351 ctaagtacaa tcccacagaa aaggacttag atctgtttaa tacattagtt
4401 agttgtacat tttctaaaga gtatgcatgg aaagatttct tgaacgaagt
4451 taggtgtgaa gtggtaccta caaaacatgt ccatcggtca aaaatcgcaa
4501 gaacttttac agtgcgtgag aaggatcaag ctattcagaa tccaattact
4551 gctgttatag ggtataaata tgcttcaact gtagatgaaa tcagtgatgt
4601 tttagatagt tccttttttc ctgattcatt atctgctgac cttcaagtca
4651 tgaaggaagg tgtgtataga gagctgggtt tagatatagg tcttcctgag
4701 gtgttgaagc gaatagcacc acttttgtac aaagctggga gatctagagt
4751 tgttatagtg gaaggcaacg tagagggcac agcagaatca atttgtagct
4801 attggcttcg tagcatgtca ttggtcaaaa caatcaaagt acgtccaaaa
4851 aaagaagtgc tcagagcagt ttcactatat agcacaaagg aaaatattgg
4901 gttacaagat gatgttgcag ctacacgatt gtgtatagaa gtctggagat
4951 ggtgcaaagc taatgatcag aatgtaaatg actggttaaa tgcactgtac
5001 tttgaaaagc aaactctcat ggattgggta gaaaggttcc gtagaaaagg
5051 agtggttcct attgaccctg aaattcagtg tattgcctta ctactttatg
5101 atgtgttagg ttataagagt gtattgcaga tgcaggcaaa taggcgagca
5151 tattcaggga aacagtatga tgcatattgt gttcaaacgt ataatgaaga
5201 aacaagactc tatgagggag atttaagggt cacatttaat tttggccttg
5251 attgtgcaag gttggaaatc ttttgggata agaaagaata tattcttgaa
5301 acatcaatta cgcaacgtca tgttttaaag ttgatgatgg aggaagtcac
5351 acaagaattg ttaaggtgtg ggatgagatt taagacagag caagtaagtc
5401 atacgaggag tttggtttta ttcaaaacgg aatcagggtt tgagtggggt
5451 aaaccaaatg tgccgtgtat agtcttcaag cattgtgctt tacgtacagg
5501 tttaaggact aagcaagcta ttaataaaga gttcatgata aatgtccaag
5551 cagatgggtt tagagctata gcacagatgg atatggaaag tccgagattt
5601 ctattagcac atgcttatca tacattacgt gatgtgcgtt accaagctgt
5651 gcaggctgta ggcaatgtgt ggtttcaaac tgctcaacat aaattattca
5701 taaatccaat aatatcatcc gggttgttag aaaactttat gaaaggcttg
5751 ccagcagcaa ttcctcctgc agcttattct ttaattatga ataaggctaa
5801 gatatctgta gatttattta tgttcaatga gttgctggct ttagttaacc
5851 caagaaatgt tctcaatttg gacggaatag aagagacttc agaaggatat
5901 agtacagtaa cctctatatc tagccgacaa tggtctgaag aggtaagtct
5951 tatggctgat gatgacattg atgatgaaga agaatttaca atagctcttg
6001 atgatataga ctttgagcag atcaatcttg atgaggacat ccaacatttt
6051 ttgcaagatg aatcagctta tactggtgat ttaacaatac aaacagagga
6101 agttgaggta aaaaggatac ggggtgtaac gcgcgtgctt gaaccagtta
6151 agctaattaa gagctgggtt tcgaaagggc ttgctatcga taaagtgtat
6201 aaccctatag ggatagtgct gatggcaagg tacatgtcaa agaattatga
6251 ttttagcaaa attcccctag ctttattaaa cccatatgat ttaactgagt
6301 ttgaaagtgt tgtcaaaggc tggggtgaaa ctgttaatga cagatttcta
6351 gaggttgaca atgatgcaca acggttggtc cgagagaaaa acatattgcc
6401 cgaagacata ttaccagatt cattattttc ttttaggcac gttgatgtgt
6451 tgttaaagag actattccct catgaccctg tgtcttcatt ctattaacaa
6501 ttttctttat tccaaaccat gacttgttct ctctactgct ctgttctcgg
6551 agcatactac ta