Sequence of DPV Barley mild mosaic virus
Barley mild mosaic virus RNA1 encoding P3, 6K1, CI, 6K2, NIa, NIb and capsid proteins.
ACC No: L49381
Dated: 2005-04-17 | Length: 7261 | CRC: 97715279
!!NA_SEQUENCE 1.0
ID BMCG standard; genomic RNA; VRL; 7261 BP.
XX
AC L49381;
XX
SV L49381.1
XX
DT 31-MAY-1996 (Rel. 47, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 4)
XX
DE Barley mild mosaic virus RNA1 encoding P3, 6K1, CI, 6K2, NIa, NIb and
DE capsid proteins.
XX
KW capsid protein; CI helicase; NIa proteinase; NIb RNA polymerase;
KW polyprotein.
XX
OS Barley mild mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Bymovirus.
XX
RN [1]
RX MEDLINE; 96010210.
RX PUBMED; 7571407.
RA Dessens J.T., Meyer M.;
RT "Characterization of fungally and mechanically transmitted isolates of
RT barley mild mosaic virus: two strains in competition";
RL Virology 212(2):383-391(1995).
XX
RN [2]
RP 1-7261
RX DOI; 10.1006/viro.1996.0245.
RX MEDLINE; 96204595.
RX PUBMED; 8623538.
RA Meyer M., Dessens J.T.;
RT "The complete nucleotide sequence of barley mild mosaic virus RNA1 and its
RT relationship with other members of the Potyviridae";
RL Virology 219(1):268-273(1996).
XX
CC Dessens,J.T. and Meyer,M., Characterization of
CC fungally and mechanically transmitted isolates
CC of barley mild mosaic virus: two strains in
CC competition, Virology 212, 383-391 (1995)
CC refers to bases 6112 to 7262.
XX
FH Key Location/Qualifiers
FH
FT source 1. .7261
FT /db_xref="taxon:12466"
FT /mol_type="genomic RNA"
FT /organism="Barley mild mosaic virus"
FT /strain="Reims-M"
FT 5'UTR 1. .147
FT /note="putative"
FT mat_peptide 148. .1023
FT /note="putative"
FT /product="P3 protein"
FT CDS 148. .6924
FT /codon_start=1
FT /db_xref="GOA:Q65654"
FT /db_xref="HSSP:1HEI"
FT /db_xref="InterPro:IPR001205"
FT /db_xref="InterPro:IPR001410"
FT /db_xref="InterPro:IPR001592"
FT /db_xref="InterPro:IPR001650"
FT /db_xref="InterPro:IPR001730"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="InterPro:IPR011545"
FT /db_xref="UniProt/TrEMBL:Q65654"
FT /note="putative"
FT /product="polyprotein"
FT /protein_id="AAC42215.1"
FT /translation="MEEFIPEVFYQNQVQSLKKILKSWKRDTSIYAYLAREQEVLAFLV
FT LSPAHIAKLNKLLTEESARCALLAQNCETIEALAVVRQALQGVTLHFGDNGMEKGWLHM
FT MKALDACLDESFSENAAALKKSIQAVGHKLIAAKNRIESCERSVNHLTTFQFAREYGLS
FT TTYFEKLSNFGGHIRSFVWSSDSGEIFPKLKRSSRTRRISTFTSYYWGEFWCNCIWFLC
FT CCWSPARWCFNSAVSIWSLCGVLNLSMIVLQFALKRHFGRYYFRYIMSGVLAICAVCCV
FT HLKNRKGPILQASQKDKRFIGILAFCITVIYMFDVDLADSLSNNLHKISRLVNLFLDDN
FT RGFATPAFDNLTDFTTILQSGTSSDDLKIVQDTLAVVLQVDEEDATQDDAIYDSDGLQT
FT FKQWVSHNQLAGMQLARPLQYPCSNTYGLTADNVAELATSMAQEAKQWSQVVGHTGSGK
FT STRLPTAYANCLKGLAGRKKNVLVCEPTRAATVNVTSGISQNFGRLVYGRHEGWSNLGD
FT KTIQVMTYGSALAAWKVDNKFLSQFDAVFLDESHLITTHALVFESICQEVTNVRKFYVS
FT ATPRDGKKCPEAVRRYEIKTVKTECSSVDTFVRSQEKENTLYVLNHDTVLVFLAGKAEC
FT DRAASNWNKLYSTNMYAHSLTGDNFTIAYEKIVTRMLTERTIVFCTNILETGVTLNVDC
FT VVDFGFTMRPELDLVDKSLTLMRRRVTENERAQRIGRAGRLRTGYAICIGNPETRHDLV
FT PPETLYEAALLSFVHGVQFYINEHFENAWIQGVTKSQASVMTQFKLSPFLMRDIVRDDG
FT AIPLSLHKILKDYTHRNTDLIGTKLSVMSHIYNSWPLYRTVQQSISRGDSNVPQALRYA
FT RVPFNVSTAHDFPWEDFAQACLEFQPRVLQVFSDNSSTSRIINLQIGKMHIINSMEEVK
FT INIHSYQRSAEGLRSVKDSFESSIFRTKLLRGNPTGKITKRIETLLDNVRVLQQVHAKL
FT EMIAYSGGEKVNMDKKSVDELNEIVELQSKNSLTAEELARILHLTKPTSTFFNLFAERG
FT RQMLVTLLVMVAASLMYLVFWVSPRKQDDITIEGKGRAYNRDKRMGYDSYEEDEVRNKI
FT NKKFKERSTRFSNDSKPETNSKYRNLKQEFVNFYDLKTDANVLQAVFTAMDGAVLLQTE
FT SPMADIGRVNKLLQDHFGDSESRAVHEGLNTMVKCHLTMKDGRQFELDMEQHDPEYVAK
FT LGGEVGFRMNRDDLRQVGATRYINPRAQTSAATLEGMTMKPMSSFTIDSAKMVGFIKTA
FT KDTLNCILYGDWIIAPAHIQQGEGDITFIFQHIQFTTTTERLASYGIRQFKGLDLVVIR
FT RPQQIRAVKKDMRASILDTPTEIQMLYLSVKGGKYQVSTSAVCFPHYNNRWGHVISTAE
FT GMCGCIVFDPTTNHIVGIHVSYNDTRRRNEFQAFTSDVLTTINAPGHEIPFSPWVFDWK
FT FCGYTTKPRNMQSAPSTLERLNINATGFGFKLNAQEIKPAMLRSTESFSREFPNTQFKL
FT IGEVKKGLIDKHTITGENPYFLEFLNTFKPYQWVQAFMDEYAPSILAYDAYFKDLKKYD
FT RPPHAKAFCQNTLTKAKNKMINILEEAGMGRTLVRTTEQVLLDMAWTTSGGPLYHGKKI
FT DIVQHLSDDELVQFSEACQQALITGTLDGVWNGSLKAELRSSQKILERKTRVFTAAPIT
FT SLIAMKYYVDDFNKQFYKTHLKAPHTVGINKFNRGWQNLYEKLNKPGWTHGSGDGSRFD
FT SSIDGFLFDVIKDIRKHFMDAEHHKELDTINEEIVNTKICLANGLIIQKNCGNNSGQPS
FT TVVDNTLALMTAFLYAYARLTGDHAFELMDENFVFVCNGDDNKFAMSPSFMTKFGCDFS
FT PFLSELGLTYEFDEATEDICENPYMSLTMVRTSFGIGFSLSIERIVAILQWSRAGGVLH
FT AYLSGIAALFESFNTPKLFNLVHTYLLWLITEHEEELFSMMELKDMFMPLPTKEQIALL
FT HYVGTEPIVEDTFLQAGHEEPDPIVPPASDTDLTNMAAAPPDNRRSRAVIPRGTSDWSM
FT PEPTMRTLGFKSKIKIETLADVPEGYMNTFASVATESQRRKWEEATRGDFGITDDEKWE
FT KLLIAACIYFADNGTSPNFDEELTMEVNSGLNSIKEYPVRPFVVRAKKISTLRRIFRCY
FT SIETKLMFVKLRRVPHWAIKHGCLDEIVFDFMIPDQFTSRTALETLKQTKLAAIGVGTS
FT NSLLTSEQTNMRTTETRRRNDYDGHEALLR"
FT mat_peptide 1024. .1224
FT /note="putative"
FT /product="6K1 protein"
FT mat_peptide 1225. .3198
FT /note="putative"
FT /gene="CI"
FT /product="helicase"
FT mat_peptide 3199. .3390
FT /note="putative"
FT /product="6K2 protein"
FT mat_peptide 3391. .3927
FT /note="putative"
FT /gene="NIa"
FT /product="viral protein genome-linked"
FT misc_feature 3568. .3570
FT /note="tyrosine residue; putative"
FT /gene="NIa"
FT /function="covalent binding to viral RNA"
FT mat_peptide 3928. .4566
FT /note="putative"
FT /gene="NIa"
FT /product="proteinase"
FT mat_peptide 4567. .6168
FT /note="putative"
FT /gene="NIb"
FT /product="RNA polymerase"
FT mat_peptide 6169. .6921
FT /citation=[1]
FT /evidence=EXPERIMENTAL
FT /product="capsid protein"
FT 3'UTR 6922. .7261
FT /citation=[1]
FT /note="putative"
XX
SQ Sequence 7261 BP; 2066 A; 1888 C; 1601 G; 1706 T; 0 other;
L49381 Length: 7261 May 10, 2005 10:09 Type: N Check: 2445 ..
1 aaaataaaac ttcaatacaa cccaatacaa acaacgaaca acaaacaacg
51 aatttgcaac ttaccacagc aatatcgacc gctagtaaca gtttaaccaa
101 actcaacaac aaatcatcct tcgaccaaac gaactctgac catcgagatg
151 gaggagttca ttcctgaagt gttctaccag aaccaggttc agagtcttaa
201 gaaaattctc aaatcctgga aacgcgacac ttctatttac gcgtatcttg
251 ctcgcgagca agaggtccta gccttccttg tactgagtcc cgcacacatt
301 gccaaattga acaaactact cactgaggag tctgcacgat gtgccctgct
351 tgcccagaac tgtgaaacca tcgaagctct ggccgttgtt cggcaagccc
401 tgcagggtgt cacgctacac tttggtgata atggcatgga gaaaggctgg
451 ttgcatatga tgaaagcact tgatgcatgt cttgacgaaa gcttcagcga
501 gaacgccgcc gcactcaaga aaagcattca ggcggttggc cacaagctca
551 tcgcagcaaa aaaccgcatc gaaagctgcg agcgatctgt gaatcacctt
601 acaacgttcc aatttgctcg cgaatatggc ttaagtacca catacttcga
651 aaaattatcc aatttcggtg ggcatattcg aagttttgtg tggtccagcg
701 actcaggaga aattttccca aaacttaaaa gatcatcacg tacgaggcgc
751 atctcgacat tcacgagcta ctactggggt gagttctggt gcaactgcat
801 ctggttcctc tgctgctgtt ggtctcccgc gcgctggtgt tttaattctg
851 cagtttccat atggagtcta tgtggcgttt taaacttatc tatgattgtt
901 ctacagtttg ctcttaagcg tcattttggt agatactatt ttcgatacat
951 aatgtctggt gtcctagcta tttgcgccgt gtgttgtgtt catcttaaaa
1001 acagaaaagg gcctatattg caagcctccc aaaaagataa gcgtttcatc
1051 ggaattttag ctttctgcat tactgttata tacatgtttg atgttgatct
1101 agccgactca cttagcaata atcttcacaa gatctctcgc cttgtgaatc
1151 ttttccttga cgataaccgc ggattcgcaa cacccgcttt cgacaaccta
1201 acggacttca caacaattct tcaaagtgga acatcaagtg acgacctaaa
1251 gattgtccag gatacgttgg ctgtggtttt acaagtcgac gaagaggacg
1301 caactcagga tgacgcaata tatgattccg atggacttca aactttcaag
1351 caatgggtct ctcacaacca actagccgga atgcagcttg cacgcccgtt
1401 acaatacccg tgctcgaaca cctatggcct gaccgcagat aacgtcgcag
1451 aactagcaac tagcatggca caggaggcaa agcagtggtc acaagttgtt
1501 ggacacactg gttccgggaa gtccacacga ctaccaactg catacgccaa
1551 ctgtttgaaa ggcttagctg ggcgaaagaa aaacgttctc gtttgtgaac
1601 ccactagagc tgcaaccgtc aatgtaacca gtggcatttc acagaatttt
1651 ggtaggcttg tttacggacg gcatgaaggc tggagtaacc ttggcgacaa
1701 aacaatacaa gtcatgacat atggttctgc actcgcagcg tggaaagtcg
1751 acaacaaatt cctaagccag tttgacgcag tgtttctcga cgaatctcac
1801 ctcatcacca cgcacgccct tgtctttgag agcatctgcc aggaggttac
1851 aaacgtccgc aagttctatg tgtcagccac accccgcgat ggcaagaagt
1901 gtccagaagc cgtgcgtagg tatgaaatca agactgttaa aaccgagtgc
1951 agcagcgtcg acactttcgt tcgaagccag gagaaggaaa acacgcttta
2001 cgttctcaat cacgacaccg tgctcgtttt tctcgctggg aaggctgagt
2051 gcgatagagc agcaagcaac tggaacaagc tgtactcaac caacatgtac
2101 gcgcactccc taacaggtga caattttaca atcgcatatg agaaaattgt
2151 cacacgcatg ctaactgagc gcaccatcgt attctgcaca aatatcctgg
2201 aaaccggtgt caccctcaac gtggactgcg ttgttgactt tggattcacc
2251 atgcgtcctg aacttgatct tgttgacaaa tcgctaacct tgatgcgacg
2301 ccgagtcacc gagaacgagc gtgcacaacg catcgggcgt gcaggaaggc
2351 ttagaacagg gtacgcaatc tgcatcggca atcccgaaac gcgccacgat
2401 ctggtgccac cagaaaccct ctacgaggca gcccttctta gcttcgttca
2451 cggcgtgcaa ttctatatca atgagcactt cgagaacgcc tggattcagg
2501 gcgtcacaaa gtctcaagcc tctgtgatga cgcagtttaa gctttccccc
2551 ttcctcatgc gtgacattgt tcgtgatgac ggtgcaatac cactatcact
2601 ccacaagata ctcaaggact acacgcaccg caacactgat ctgataggaa
2651 caaaactctc cgtcatgtcg catatctaca actcgtggcc tctctaccgg
2701 acagtgcaac aatccatttc tcgtggagat tctaatgttc cgcaagcgct
2751 cagatacgca cgcgttcctt tcaacgtcag cactgcccat gattttccat
2801 gggaagattt cgcacaggca tgccttgagt tccagccacg tgttcttcag
2851 gtcttcagtg acaacagcag cacttcgcgc ataatcaacc tacagattgg
2901 caagatgcac atcatcaatt ccatggaaga agtcaagata aacatacaca
2951 gctatcagcg ctctgcagaa ggcctacgct cagtcaaaga cagctttgag
3001 agctcgatct ttcgaacaaa actgcttcgt gggaacccaa ctggaaagat
3051 aaccaagcgc attgagactc tccttgataa cgtgcgggtg ctacaacagg
3101 tgcacgcaaa actagagatg attgcatact caggtggaga gaaagttaac
3151 atggacaaga aatcagttga cgaactcaat gagatcgtcg aactccagag
3201 caagaattca ctcactgccg aagaactagc acgcatattg caccttacga
3251 agcccacctc cactttcttc aatctttttg ctgaacgcgg ccgacaaatg
3301 ctcgtcactc tcctggtcat ggttgccgcc tcgctcatgt atcttgtttt
3351 ctgggtttcc ccaaggaaac aagacgacat taccattgaa ggaaaaggta
3401 gagcatacaa tcgtgacaag cgcatggggt acgactccta cgaagaggac
3451 gaggttcgca acaagatcaa caagaagttc aaagaacgca gcacaaggtt
3501 ctccaacgat tccaaaccgg aaacaaactc aaaataccgg aatctgaagc
3551 aagagtttgt taatttctat gatcttaaaa ctgatgcaaa cgtactacaa
3601 gctgtgttca ctgcaatgga cggagccgtt cttcttcaaa ccgaatcgcc
3651 aatggcagat attggccgtg tcaataaact gctgcaagac cactttggag
3701 atagtgagag ccgagccgtg catgaaggtc tcaacaccat ggttaagtgc
3751 cacttaacta tgaaagatgg aagacagttt gagctcgaca tggaacagca
3801 tgatcccgag tatgttgcca aacttggagg tgaagttggt ttcagaatga
3851 acagagatga tctacgccaa gttggcgcca cacggtacat caacccaaga
3901 gcacaaacat ccgcagcgac gctcgaaggc atgaccatga aacccatgag
3951 ctctttcacc attgatagcg caaagatggt tggcttcatc aagactgcaa
4001 aagacacact caactgcatc ctctatggcg actggatcat agctcctgcg
4051 cacatacaac agggcgaagg ggacataaca ttcatctttc agcacataca
4101 gttcacgacc acaactgagc gcttagccag ctacggcatc cgacaattta
4151 aaggccttga ccttgttgtc atccgacgcc cccaacagat acgcgcggtt
4201 aagaaggaca tgcgtgctag cattcttgac acacctactg agatacagat
4251 gctatatttg tcagtaaaag gcggcaagta ccaagtgtcc acgtccgctg
4301 tgtgctttcc acactacaac aaccgatggg gacatgtcat ttcaacggct
4351 gaaggtatgt gcggttgcat tgtatttgac cccacgacta atcacatcgt
4401 tggaattcac gtctcctaca acgacacgcg cagaagaaat gagtttcaag
4451 ctttcacaag tgacgttctg acaacgatta atgcgcctgg acacgaaata
4501 cctttcagcc cgtgggtctt tgactggaag ttttgcgggt acacgacaaa
4551 accacggaac atgcaaagcg caccgagcac gcttgagaga ctcaacatca
4601 acgccacagg tttcggtttc aagctcaacg cacaggagat caaacctgcc
4651 atgctacgct ccacagagtc gttctccagg gagtttccaa acacacagtt
4701 caaacttatc ggtgaagtga agaaaggact catcgacaaa cacacgatta
4751 caggagagaa tccctacttc cttgaattcc tgaacacatt caaaccatat
4801 caatgggtac aggccttcat ggacgagtac gcaccctcca tccttgccta
4851 tgatgcgtat ttcaaggact tgaagaaata cgataggcca ccacatgcaa
4901 aagctttctg ccagaacaca ttaaccaaag ctaaaaacaa gatgatcaac
4951 attctcgaag aggcaggcat gggaaggacc ctagtacgaa ccaccgagca
5001 agtcttgctt gacatggcgt ggactacctc tggtggacca ttataccatg
5051 gtaagaagat tgacattgtg caacacttgt ctgatgacga gcttgtacaa
5101 ttcagtgaag cctgccaaca ggctctcatc actggaacgc tggatggagt
5151 ctggaacgga tcactcaaag ccgaactgcg ctcttcgcag aaaatccttg
5201 aacggaaaac tcgtgttttc actgctgccc ccatcacaag cctaatcgca
5251 atgaaatatt atgtggatga tttcaacaag cagttctata aaacccacct
5301 caaagcacca cacacagtcg gcatcaacaa gtttaaccgc ggatggcaga
5351 atctctatga gaagctcaac aaacctgggt ggacgcatgg gagcggggat
5401 ggctccaggt tcgatagctc tattgacgga ttcctttttg acgtcatcaa
5451 agacatccgg aagcatttca tggatgcaga acaccacaag gagctagaca
5501 caattaatga agagattgtc aacacaaaaa tatgtctagc aaatggtctc
5551 atcatccaaa agaactgtgg gaacaacagc gggcagccaa gtactgttgt
5601 agacaacaca cttgcactca tgactgcttt cctctacgca tacgcccggc
5651 tcactggaga ccacgccttc gaactcatgg acgaaaactt tgttttcgtt
5701 tgcaatggtg acgacaacaa gttcgctatg tcacctagct tcatgacaaa
5751 gtttggatgc gacttctcac cattcctttc tgagctaggg ctaacctacg
5801 aattcgacga agccactgaa gacatttgtg aaaaccccta catgtccttg
5851 acgatggtcc gcacctcgtt tgggatcggt ttctccctct ccatagagcg
5901 catcgttgca atcttgcaat ggagccgcgc tggcggagtc ctgcatgcct
5951 acctctctgg cattgcggct cttttcgaat ccttcaacac acccaagctc
6001 tttaatctcg tgcacacata cctcctctgg ctcatcacag agcacgagga
6051 ggaactcttc tctatgatgg aactcaaaga catgttcatg cccctgccca
6101 ctaaggaaca gatagccttg ttgcactacg tcgggactga gcccatcgtg
6151 gaggacactt tcctgcaagc agggcatgag gaaccagatc ccatagttcc
6201 accagcctcc gacaccgatc tgacaaacat ggctgcagca ccaccggaca
6251 acagaaggtc acgtgccgtc atcccccgtg gcactagtga ttggagcatg
6301 cccgaaccca caatgcgaac actgggtttt aagtccaaga tcaaaatcga
6351 aacacttgct gatgtccccg aagggtatat gaataccttt gcgtccgttg
6401 caactgagtc gcaacgtagg aagtgggaag aggccacgcg tggcgatttt
6451 ggcatcaccg acgacgagaa atgggaaaaa ttgctcattg ctgcctgtat
6501 atactttgca gataatggca cctcaccaaa ttttgatgag gaactcacta
6551 tggaagttaa tagcggtctc aactccatca aagagtatcc cgttcgccct
6601 ttcgtcgtca gggccaagaa gatctccaca ctgcgcagga tcttccgctg
6651 ttattccatc gaaacgaaac tgatgttcgt aaagctgagg cgcgtgccgc
6701 attgggccat aaagcacgga tgccttgatg aaatcgtctt tgatttcatg
6751 atccccgacc agttcacctc caggactgca ctggaaacac tgaagcagac
6801 caagcttgcc gccattggtg ttggcacaag caattctctt ctcacctctg
6851 agcagacgaa catgaggacc actgaaaccc gaaggcgcaa tgactacgat
6901 ggtcacgagg cgcttctccg gtagatctct catgcagttt catttccttt
6951 caagcagtgc atttaaatac gcttttaatt acatcaagcg tcaagaattc
7001 ctcccgcttg cagcaaatcc ttaaagggtg gcactttgtg ttatgcaatg
7051 gaaaattcag tgacgcaatc aaccatcatt ggttggtgac aacgcagtac
7101 tttctttctt tcacatcaag cgaccagcac atcgcccgct tacagctaat
7151 cctacctgag ggtggcactc tgtgttatgt aatggaatgt gctatctcgc
7201 aaccaaccgt cattggttga tggtgcggct aacacccgcg ctcttgtata
7251 ccggaaaggt t