Sequence of DPV Turnip crinkle virus
Turnip crinkle virus P88 protein, P28 protein, P8 protein, and coat protein genes, complete cds.
ACC No: M22445
Dated: 2005-08-26 | Length: 4050 | CRC: -909684998
!!NA_SEQUENCE 1.0
ID M22445 standard; genomic RNA; VRL; 4050 BP.
XX
AC M22445;
XX
SV M22445.2
XX
DT 23-NOV-1989 (Rel. 21, Created)
DT 26-AUG-2005 (Rel. 85, Last updated, Version 5)
XX
DE Turnip crinkle virus P88 protein, P28 protein, P8 protein, and coat protein
DE genes, complete cds.
XX
KW coat protein; P28 protein; P8 gene; P88 gene.
XX
OS Turnip crinkle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4050
RX PUBMED; 2718381.
RA Carrington J.C., Heaton L.A., Zuidema D., Hillman B.I., Morris T.J.;
RT "The genome structure of turnip crinkle virus";
RL Virology 170(1):219-226(1989).
XX
CC On Aug 23, 2005 this sequence version replaced gi:335192.
CC Original source text: Turnip crinkle virus cDNA to viral RNA.
CC Draft entry and computer-readable sequence for [1] kindly submitted
CC by L.A.Heaton, 08-FEB-1989.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4050
FT /db_xref="taxon:11988"
FT /mol_type="genomic RNA"
FT /organism="Turnip crinkle virus"
FT /clone="pTCV-[103,129]"
FT /map="281 bp upstream of AvaI site"
FT CDS 62. .2389
FT /codon_start=1
FT /db_xref="GOA:P17460"
FT /db_xref="UniProtKB/Swiss-Prot:P17460"
FT /note="internal stop codon"
FT /transl_except=(pos:812. .814,aa:OTHER)
FT /product="P88 protein"
FT /protein_id="AAA96969.2"
FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVRSVF
FT QGSGLVVVSSDTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC
FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER
FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHDHRNALAEAGKVRKWWVNLAM
FT HPMTGRSWSRAWRRLCRLPDDQAISFVRXGCLRELVGRETQISRGENPAMRVFPLANPP
FT KVRRIFHICGMGNGLDFGVHNNSLNNLRRGLMERVFYVEDAQKQLKPAPQPIPGIFGKL
FT SGIRRRLVRLAGNHTPVPREKYPSFYKGRRATIYQKALDLYMTCRLSRKDAELKTFVKA
FT EKINFTAKKDPAPRVIQPRDPRYNIEVGKYLKPYEHHLYRAIDAMWGGPTVLKGYDVGE
FT LGNIMSNTWDKFRKTCAIGFDMKRFDQHVSVDALRWEHSVYNAGFNCPELAQLLTWQLT
FT NKGVGRASDGFIKYQVDGCRMSGDVNTALGNCLLACSITKYLMKGIKCKLINNGDDCVL
FT FFEADEVDRVRERLHHWIDFGFQCIAEEPQYELEKVEFCQMSPIFDGEGWVMVRNPRVS
FT LSKDSYSTTQWANEKDAARWLAAIGECGLAIAGGVPVLQSYYSCLKRNFGPLAGDYKKK
FT MQDVSFDSGFYRLSKNGMRGSKDVSQDARFSFYRGFGYTPDEQEALEEYYDNLQLLCEW
FT DPTGYKEELSDRWILNEFPTTL"
FT CDS 62. .814
FT /codon_start=1
FT /db_xref="GOA:P17460"
FT /db_xref="UniProtKB/Swiss-Prot:P17460"
FT /product="P28 protein"
FT /protein_id="AAA96968.2"
FT /translation="MPLLHTLNTALAVGLLGARYYPEVQTFLGLPDYVGHMKNVVRSVF
FT QGSGLVVVSSDTVGVRGTYSNRGQIGSSLGCILAVPDSGADIEIDLDRLVGTEEEATSC
FT LVEAVGSTADVPRRRVRQKGRFAMHAVNAAKLHFCGVPKPTEANRLAVSKWLVQYCKER
FT HVVDSHIRTIVNTALPRVFTPDAEDIQVVLDLHSVRAHDHRNALAEAGKVRKWWVNLAM
FT HPMTGRSWSRAWRRLCRLPDDQAISFVR"
FT CDS 2356. .2574
FT /codon_start=1
FT /db_xref="GOA:P17461"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProtKB/Swiss-Prot:P17461"
FT /product="P8 protein"
FT /protein_id="AAA96970.1"
FT /translation="MDPERIPYNSLSDSDATGKRKKGGEKSAKKRLVASHAASSVLNKK
FT RNEGSASHGGTWVIVADKVEVSINFNF"
FT CDS 2742. .3797
FT /codon_start=1
FT /db_xref="GOA:P06663"
FT /db_xref="HSSP:2TBV"
FT /db_xref="UniProtKB/Swiss-Prot:P06663"
FT /product="coat protein"
FT /protein_id="AAA96971.1"
FT /translation="MENDPRVRKFASDGAQWAIKWQKKGWSTLTSRQKQTARAAMGIKL
FT SPVAQPVQKVTRLSAPVALAYREVSTQPRVSTARDGITRSGSELITTLKKNTDTEPKYT
FT TAVLNPSEPGTFNQLIKEAAQYEKYRFTSLRFRYSPMSPSTTGGKVALAFDRDAAKPPP
FT NDLASLYNIEGCVSSVPWTGFILTVPTDSTDRFVADGISDPKLVDFGKLIMATYGQGAN
FT DAAQLGEVRVEYTVQLKNRTGSTSDAQIGQFAGVKDGPRLVSWSKTKGTAGWEHDCHFL
FT GTGNFSLTLFYEKAPVSGLENADASDFSVLGEAAAGSVQWAGVKVAERGQGVKMVTTEE
FT QPKGKLQALRI"
XX
SQ Sequence 4050 BP; 1086 A; 978 C; 1109 G; 877 T; 0 other;
M22445 Length: 4050 August 30, 2005 08:42 Type: N Check: 6794 ..
1 gtaatctgca aatccctgca cccgcctaaa attgccctca tcaaccttct
51 ctctattcac gatgcctctt ctacacacac tcaacacagc gctcgcagtg
101 ggactcctag gagccaggta ctaccctgag gttcaaacct tcttggggct
151 gcctgactac gtgggtcaca tgaagaatgt agtacggtct gttttccagg
201 gatctgggct agtagtagtg tcctccgaca cagtcggtgt cagggggacg
251 tatagtaata gaggtcagat aggtagtagt ctcgggtgta tactagccgt
301 tccggatagc ggggcggata tagaaataga cctagatagg ttggtaggaa
351 cggaagagga agccacatcc tgtttggtgg aggcggtagg tagtaccgcg
401 gatgtcccca ggaggagagt tcgtcaaaag gggcggtttg ctatgcatgc
451 cgtcaacgca gcaaagctgc acttttgtgg cgtcccaaaa cccactgaag
501 cgaatcgact agcggtctca aaatggcttg tccaatactg caaagagaga
551 catgtcgtag acagccacat cagaacgata gtcaatacgg ctcttcctag
601 agtgttcacg cctgacgcgg aagacattca ggtcgtgctg gatttgcaca
651 gtgtaagagc acacgaccac cgcaacgccc tagccgaagc aggcaaagtg
701 cggaagtggt gggtcaatct cgcgatgcat cccatgactg ggaggtcgtg
751 gtctagggct tggaggcgat tatgccgact gcctgacgac caggcgatct
801 cttttgtccg ctaggggtgc ttgcgggagc tggtcgggag ggagactcaa
851 atctccaggg gtgaaaaccc ggccatgcgc gtgttcccgt tagcaaatcc
901 cccgaaggtt cgacgcatct tccatatctg tggaatgggc aatggtttag
951 actttggagt ccacaacaac tcactcaaca atttgagaag agggttgatg
1001 gaaagagtct tttacgttga agatgcgcag aagcaattga aaccagcccc
1051 ccaaccgatc ccagggattt tcgggaagtt gagtgggatt cggagacgat
1101 tggtcaggtt ggccggaaat catacccctg tgcctcggga gaaatacccg
1151 tcgttctaca agggcaggag ggccaccata taccaaaagg ctttggatct
1201 ctacatgaca tgccggctat cccggaagga cgcagaactc aaaacattcg
1251 tgaaggcaga aaagatcaat ttcacggcta agaaagaccc ggctccacgg
1301 gtcatccagc cgagggaccc acgatataac attgaggttg ggaaatactt
1351 gaaaccgtac gagcaccatt tatatcgggc aattgacgct atgtggggtg
1401 ggcccactgt gctgaaagga tacgatgtgg gggagcttgg aaacattatg
1451 agtaacacct gggataaatt ccggaaaacg tgtgcgatag gatttgacat
1501 gaagagattc gaccagcacg tatccgtgga cgccctacga tgggaacaca
1551 gtgtatacaa cgcgggcttt aactgtcccg agttggcaca gctgctaact
1601 tggcagttga ccaacaaggg agttgggaga gcctccgatg gctttatcaa
1651 ataccaagtt gatggttgtc gcatgtccgg agatgttaac acagccttgg
1701 gcaactgcct actggcttgc tctatcacca agtacttaat gaagggaatc
1751 aaatgcaaat taatcaacaa tggagacgat tgtgtgctgt tcttcgaagc
1801 tgatgaagtc gacagggtgc gcgaaaggct gcatcattgg atcgactttg
1851 ggtttcaatg catagcggaa gaaccacaat acgagttgga gaaagttgaa
1901 ttttgccaga tgtcccctat tttcgatggt gaagggtggg tcatggtcag
1951 aaacccccgt gtgagcctct ccaaggacag ctacagcacc acacaatggg
2001 cgaatgagaa agatgcagcc agatggttgg ctgccatcgg agagtgtggc
2051 ttggctattg caggtggcgt accagtgtta caatcatatt attcttgcct
2101 gaagaggaat tttggacccc tggccgggga ctacaagaag aagatgcaag
2151 atgtttcctt tgatagtgga ttctacaggt tatccaagaa cgggatgagg
2201 ggcagcaaag acgtgtccca agatgctagg ttcagctttt accgggggtt
2251 cggctacact ccagacgagc aggaagcgct tgaggagtac tacgacaacc
2301 tgcaactgct ctgtgagtgg gaccccacgg gatataaaga agaacttagt
2351 gatagatgga tcctgaacga attccctaca actctctaag cgacagcgac
2401 gcaacaggaa aacggaagaa aggcggagag aaaagtgcga agaagagatt
2451 ggtagctagc cacgcggcta gctctgtttt aaacaagaaa agaaatgaag
2501 gttctgctag tcacgggggt acttgggtta ttgttgctga taaagtggaa
2551 gtctcaatca acttcaactt ctaatcagac atgtcagtgc ccgacgtccc
2601 cgtgggtaat atatgctttc tacaactctc tctcactggt cctcctactt
2651 tgtcatctga ttcctgaaat caaaccgatt cacacatcct acaacacaca
2701 cgactcatcg aagcagcaac acataagcat caacactgga aatggaaaat
2751 gatcctagag tccggaagtt cgcatctgat ggcgcccaat gggcgataaa
2801 gtggcagaag aagggctggt caaccctaac cagcagacag aaacagaccg
2851 cccgcgcagc gatggggatc aagctctctc ctgtggcgca acctgtgcag
2901 aaagtgactc ggctgagtgc tccggtggcc cttgcctacc gcgaggtttc
2951 cacccagcct cgggtctcta ctgccaggga cggcataacc agaagcggtt
3001 ctgaactgat cacaaccttg aagaagaaca ctgacactga acctaagtac
3051 accacagctg tgcttaaccc aagcgaaccc ggaacattca accagctcat
3101 taaggaggcg gcccagtatg aaaaataccg attcacgtca ctcagattta
3151 ggtactcccc catgagccct tcaaccaccg gaggcaaggt ggctctggca
3201 ttcgaccgag atgcagccaa acctccgccc aacgacctcg cttccctcta
3251 caacatagag ggttgtgtat ctagcgtgcc ttggacaggg tttattttga
3301 ccgtcccaac agattctact gaccgctttg tggcggatgg tatcagcgat
3351 ccaaagcttg tcgatttcgg caagctcatc atggccacct acggccaagg
3401 agccaatgat gccgcccaac tcggtgaagt gcgagtcgag tacaccgtgc
3451 agctcaagaa cagaactggc tcaaccagcg acgcccagat tgggcagttc
3501 gcaggtgtta aggacggacc caggctggtt tcatggtcca agaccaaggg
3551 gacagctggg tgggagcacg attgtcattt tctcggaacc ggaaacttct
3601 cgttgacatt gttctacgag aaggcgccgg tctcggggct agaaaacgca
3651 gacgcctctg acttctcggt cctgggagaa gccgcagcag gtagtgtcca
3701 atgggcagga gtgaaggtag cagaaagggg acaaggcgtg aaaatggtca
3751 caactgagga gcagccaaag ggtaaattgc aagcactcag aatttagtac
3801 ggtaatagtg tagtcttctc atcttagtag ttagctctct cttatattaa
3851 gaaaagaaaa caaaaccccc agtcgcttta ttttgacctg tgttagggac
3901 caaaaacggt ggcagcactg tctagctgcg ggcattagac tggaaaacta
3951 gtgctctttg ggtaaccact aaaatcccga aagggtgggc tgtggtgacc
4001 ttccgaacta aaagatagcc tccctcctcg cgcggggggg gggcctgccc