Sequence of DPV Melon necrotic spot virus
Melon necrotic spot virus (clones pMNS17A and pMNS01A) p29, replicase (p89), p7A, p7B, p14, capsid protein (p42) genes, complete genome.
ACC No: M29671
Dated: 2005-04-17 | Length: 4266 | CRC: -1949686400
!!NA_SEQUENCE 1.0
ID MNSCG standard; genomic RNA; VRL; 4266 BP.
XX
AC M29671;
XX
SV M29671.1
XX
DT 25-FEB-1992 (Rel. 31, Created)
DT 17-APR-2005 (Rel. 83, Last updated, Version 8)
XX
DE Melon necrotic spot virus (clones pMNS17A and pMNS01A) p29, replicase
DE (p89), p7A, p7B, p14, capsid protein (p42) genes, complete genome.
XX
KW capsid protein; complete genome; replicase.
XX
OS Melon necrotic spot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RX MEDLINE; 90063551.
RX PUBMED; 2584953.
RA Riviere C.J., Pot J., Tremaine J.H., Rochon D.M.;
RT "Coat protein of melon necrotic spot carmovirus is more similar to those of
RT tombusviruses than those of carmoviruses";
RL J. Gen. Virol. 70(Pt 11):3033-3042(1989).
XX
RN [2]
RP 1-4266
RX MEDLINE; 91011332.
RX PUBMED; 2212985.
RA Riviere C.J., Rochon D.M.;
RT "Nucleotide sequence and genomic organization of melon necrotic spot
RT virus";
RL J. Gen. Virol. 71(Pt 9):1887-1896(1990).
XX
CC Draft entry and computer-readable [or printed] sequence for [J.
CC Gen. Virol. (1989) In press]
CC kindly submitted by D.A.M.Rochon, 26-OCT-1989.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4266
FT /db_xref="taxon:11987"
FT /mol_type="genomic RNA"
FT /organism="Melon necrotic spot virus"
FT CDS 88. .2463
FT /codon_start=1
FT /db_xref="GOA:Q83424"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q83424"
FT /note="putative replicase; internal stop codon"
FT /transl_except=(pos:892. .894,aa:OTHER)
FT /gene="p89"
FT /product="replicase"
FT /protein_id="AAB02430.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVAAIVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVNXGCLEELAGFCTS
FT VRRGTHPDMTEFPQDRPIKTRKLYCLGGVGTSVKFNVHNNSLANLRRGLVERVFFVEND
FT KKELEPAPKPLSGAFDRLTWFRRKLHSIVGTHSSISPGQFLDFYTGRRRTIYEGAVKSL
FT EGLSVQRRDAYLKTFVKAEKINTTKKPDPAPRVIQPRNVRYNVEVGRYLRRFEHYLYRG
FT IDEIWNGPTIIKGYTVEQIGKIARDAWDSFVSPVAIGFDMKRFDQHVSSDALKWEHSVY
FT LDAFCHDSYLAELLKWQLVNKGVGYASDGMIKYKVDGCRMSGDMNTAMGNCLIACAITH
FT DFFRSRGIRARLMNNGDDCVVICEKECAAVVKADMVRHWRQFGFQCELECDAEIFEQIE
FT FCQMRPVYDGEKYVMVRNPLVSLSKDSYSVGPWNGINHARKWVNAVGLCGLSLTGGIPV
FT VQSYYNMMIRNTQSVNSSGILRDVSFASGFRELARLGNRKSGAISEDARFSFYLAFGIT
FT PDLQRAMESDYDAHTIEWGFVPQGNPRIQPISWTLNEL"
FT CDS 88. .894
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:Q83423"
FT /gene="p29"
FT /function="unknown"
FT /product="protein 29"
FT /protein_id="AAB02431.1"
FT /translation="MDTGLKFLVSGGLATSSVIRKVSAVSSLDSSLPSSSILSAIHGSW
FT TSAISHDCSKIAKVAAIVGIGYLGVRIGAAWCRRTPGITNSIITYGEEVVEQVKVDIDE
FT DAEEESDIGEEIVVGTIGIGIHTNVNPEVRAKRRHRSRPFIKKIVNLTKNHFGGCPDSS
FT KSNVMAVSKFVYEQCKQHNCLPHQTRLIMSIAVPLVLSPDMYDISSKALLNSEILTENR
FT ATLDRLKTLDGWLTHLVCHPLSAKAWRRAIDNLCGLPDWKAFKLVN"
FT variation 2389
FT /note="can be 'a' or 't'"
FT /gene="p89"
FT CDS 2442. .2639
FT /codon_start=1
FT /db_xref="GOA:Q89682"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q89682"
FT /gene="p7A"
FT /function="unknown"
FT /product="protein p7A"
FT /protein_id="AAB02432.1"
FT /translation="MDSQRTVELTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNF"
FT CDS 2442. .2828
FT /codon_start=1
FT /db_xref="GOA:Q83425"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProt/TrEMBL:Q83425"
FT /note="internal stop codon"
FT /transl_except=(pos:2637. .2639,aa:OTHER)
FT /gene="p14"
FT /function="unknown"
FT /product="protein 14"
FT /protein_id="AAB02433.1"
FT /translation="MDSQRTVELTNPRGRSKERGDSGGKQKNSMGRKIANDAISESKQG
FT VMGASTYIADKIKVTINFNFXCMACCRCDSSPGDYSGALLILFISFVFFYITSLSPQGN
FT TYVHHFDSSSVKTQYVGISTNGDG"
FT CDS 2643. .2828
FT /codon_start=1
FT /db_xref="InterPro:IPR009575"
FT /db_xref="UniProt/TrEMBL:Q89846"
FT /gene="p7B"
FT /function="unknown"
FT /product="protein 7B"
FT /protein_id="AAB02434.1"
FT /translation="MACCRCDSSPGDYSGALLILFISFVFFYITSLSPQGNTYVHHFDS
FT SSVKTQYVGISTNGDG"
FT CDS 2815. .3987
FT /codon_start=1
FT /db_xref="GOA:P19899"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="InterPro:IPR008975"
FT /db_xref="UniProt/Swiss-Prot:P19899"
FT /gene="p42"
FT /product="capsid protein"
FT /protein_id="AAB02435.1"
FT /translation="MAMVKRINNLPTVKLAKQALPLLANPKLVNKAIDVVPLVVQGGRK
FT LSKAAKRLLGAYGGNISYTEGAKPGAISAPVAISRRVAGMKPRFVRSEGSVKIVHREFI
FT ASVLPSSDLTVNNGDVNIGKYRVNPSNNALFTWLQGQAQLYDMYRFTRLRITYIPTTGS
FT TSTGRVSLLWDRDSQDPLPIDRAAISSYAHSADSAPWAENVLVVPCDNTWRYMNDTNAV
FT DRKLVDFGQFLFATYSGAGSTAHGDLYVEYAVEFKDPQPIAGMVCMFDRLVSLSEVGST
FT IKGVNYIADRDVITTGGNIGVNINIPGTYLVTIVLNATSIGPLTFTGNSKLVGNSLNLT
FT SSGASALTFTLNSTGVPNSSDSSFSVGTVVALTRVRMTITRCSPETAYLA"
FT variation 4263. .4266
FT /note="cttt in wt; cgcct in variant"
XX
SQ Sequence 4266 BP; 1057 A; 894 C; 1063 G; 1251 T; 1 other;
M29671 Length: 4266 May 10, 2005 10:09 Type: N Check: 3891 ..
1 ngattactct agccggatcc ccgactctct tatttcctta agttagttcg
51 tgtattgatt atctgtcttg atcagtatag gttagcaatg gatactggtt
101 tgaaatttct tgtttctggg ggtttagcca cctcatctgt tattaggaaa
151 gtgagtgctg tgagttcatt ggattcgtcc cttccttcat catctatatt
201 atctgccatc catgggtctt ggactagtgc tatcagccac gattgtagta
251 agattgccaa ggttgccgcc atagttggga ttggttatct tggggttagg
301 attggtgccg cttggtgccg ccgtactccc ggaataacga attccataat
351 cacctatggg gaagaagtgg ttgagcaagt gaaggtagat attgatgaag
401 atgctgaaga ggagtccgat attggtgagg aaattgtggt tggtacgata
451 ggtattggta tacacacaaa cgtcaaccct gaagttcgag ctaagcgcag
501 acatagatcg aggccattca tcaagaagat cgtgaattta acgaagaatc
551 acttcggtgg atgccccgac tctagtaaat cgaacgtcat ggctgtaagt
601 aaattcgttt atgaacaatg taaacagcac aattgtcttc cacatcaaac
651 gagattgatc atgagtattg cagttccatt ggtgttaagt cccgacatgt
701 acgacatttc cagcaaagct ctgctaaaca gcgagatatt gacagaaaac
751 agagccacgc tggaccgcct caaaactctc gacgggtggc taacacactt
801 ggtgtgccac ccccttagcg cgaaggcttg gaggcgggca attgacaact
851 tgtgtggtct tccagattgg aaggctttca agttggtcaa ctaggggtgc
901 ctggaggagc tcgctgggtt ctgtacttcg gtacggagag ggacacaccc
951 agacatgacc gagtttcctc aggatcgtcc cattaagaca cgcaaactgt
1001 attgtttagg gggagttgga actagcgtga agttcaacgt gcacaataac
1051 tctctagcta accttcggcg cggtctagtt gagcgcgttt tctttgttga
1101 aaatgataag aaggaactgg agcctgcccc taaacctctt agtggtgcgt
1151 ttgatcgctt aacttggttt cgtcggaaac tccatagtat tgtgggtact
1201 cattccagta ttagtccagg tcagttcttg gacttctata ctggcaggag
1251 gcgcacgatt tatgaaggtg ctgtgaaatc gttggagggg ttaagtgttc
1301 aacgaaggga tgcctatctg aaaacgtttg ttaaagcgga gaagattaat
1351 accactaaga aacctgaccc agctccgcgg gttatacaac cgaggaacgt
1401 aagatacaac gttgaggttg gtcgttatct acgtaggttt gagcattacc
1451 tctatcgagg aattgacgaa atctggaatg gccccaccat aataaaagga
1501 tacactgtcg agcaaattgg gaaaatcgcc cgtgacgcat gggactcctt
1551 cgttagtcct gtagcaatcg gatttgacat gaaaaggttc gaccaacatg
1601 tatcctccga cgctcttaaa tgggaacata gtgtttatct tgacgctttt
1651 tgccacgact catatcttgc agaattgttg aagtggcaat tagttaataa
1701 gggtgttggg tatgctagtg atggaatgat taaatataag gttgatgggt
1751 gccggatgag tggtgacatg aatacagcta tgggtaactg tttgattgcc
1801 tgtgccatca cgcatgattt cttccgtagt cgtggtatca gggcgcgttt
1851 gatgaacaat ggtgatgact gtgtcgtaat atgcgaaaaa gaatgtgccg
1901 cggtggttaa agccgacatg gtaaggcact ggagacaatt cgggtttcaa
1951 tgcgaactcg aatgcgatgc agaaatcttc gagcaaattg agttttgtca
2001 aatgcggcct gtgtacgacg gggaaaaata tgtgatggta cggaatccct
2051 tggttagcct atccaaagat tcctactcag tcggcccttg gaatggaatc
2101 aaccatgcac gcaagtgggt caatgcagtt ggcttgtgtg gcttatccct
2151 cactggtgga attcctgttg tccaaagtta ttataatatg atgatccgca
2201 acactcagtc cgtgaacagt tctggcatac ttcgcgatgt cagttttgct
2251 agtggatttc gggagttagc gcgattgggt aacaggaaaa gtggtgccat
2301 atctgaagac gcccgtttta gcttttatct cgcatttggc attactccag
2351 atttacaacg tgccatggaa agtgactatg atgctcatac tatagagtgg
2401 ggtttcgtgc cccagggaaa tcctagaata cagccaatct catggactct
2451 caacgaactg tagaattaac taatcctcgg ggaagaagta aagaacgtgg
2501 tgacagcggg ggaaaacaga agaactcaat ggggcgaaag atagccaatg
2551 atgctatctc tgaatcgaag caaggagtta tgggtgccag cacatacatt
2601 gctgataaaa ttaaggtgac tattaacttt aatttttagt gtatggcttg
2651 ttgccgttgt gactccagcc ccggggatta ctctggagca ttgcttatat
2701 tatttatctc atttgttttc ttttatatta cctcgcttag cccgcaagga
2751 aatacttacg ttcatcactt cgatagttct tccgttaaaa cacaatacgt
2801 tggcatctct acaaatggcg atggttaaac gcattaataa tttacccaca
2851 gtgaagcttg ctaagcaggc tctacccctg cttgcgaatc ctaaacttgt
2901 aaataaagct atagatgtgg ttcctttggt cgtccaaggt ggtcggaaat
2951 tgtccaaggc tgctaagcgg ttgcttggcg cttatggagg caacatttcg
3001 tacactgagg gtgccaaacc gggtgcaata tcagctcctg tcgctattag
3051 tcggcgagtg gctggtatga agcctaggtt tgtcagatct gaaggatctg
3101 tgaagatagt tcatagggag tttattgcct ctgttcttcc ttcgagtgat
3151 ctcactgtca ataatggtga tgtcaatatc ggtaagtata gagtcaatcc
3201 tagtaataac gctttattca cctggcttca gggacaagct caactatatg
3251 atatgtacag atttactcgg ctccgtatca cctacattcc tactaccgga
3301 tccacttcca cgggtcgtgt ctctctcctc tgggatagag attctcagga
3351 ccccctccct atagaccgtg ctgccattag ctcttatgct cattccgctg
3401 attcagcgcc ttgggctgag aatgttctag tggtcccatg tgacaatacg
3451 tggaggtaca tgaatgatac caatgctgtc gaccggaagt tggttgattt
3501 tgggcagttc ttattcgcta cttattctgg tgctggtagc accgcccatg
3551 gtgatcttta tgttgagtat gctgtagaat ttaaggaccc ccagcctatc
3601 gctgggatgg tatgtatgtt tgatcgcttg gtctctcttt ccgaagttgg
3651 atccactatc aagggtgtca attacattgc tgatcgtgat gtgataacta
3701 ctgggggtaa tattggtgtt aacatcaata ttcccgggac ttatctcgtc
3751 acgattgttc ttaatgctac atcgattggt cccctcacct tcactggtaa
3801 ttctaaactt gtaggcaaca gtcttaatct taccagcagt ggtgcatctg
3851 ctcttacgtt cacccttaac tccaccggtg tgcccaacag tagcgattct
3901 tcattctctg tgggtaccgt tgttgccttg actagggtgc gtatgacgat
3951 cactcgctgc tctccagaaa ctgcttacct cgcctaattt gatttactgc
4001 actccaaatc cggtctccct tgttcctacc tgttctcagc ctgatatctg
4051 ttctggtgtc ctataggcgt ccttgtcgtg tgtagtgcgg tctggctaac
4101 cgtaatggcg tatcggcttg gatttccgat gatttggctc cgggatgtac
4151 gacatagctg aagatggttg gagtttggtg gaccaccgct agcaaaatac
4201 actctgtgtg gggcgtgcta gtggatagtc atgtatgttt gagatgggtt
4251 ataggcccat cccttt