Sequence of DPV Pea enation mosaic virus-2
Pea enation mosaic virus-2 65kDa viral replicase gene, complete cds.
ACC No: U03563
Dated: 2002-04-27 | Length: 4253 | CRC: 1106269655
!!NA_SEQUENCE 1.0
ID PE03563 standard; RNA; VRL; 4253 BP.
XX
AC U03563; S53233;
XX
SV U03563.1
XX
DT 25-MAY-1994 (Rel. 39, Created)
DT 27-APR-2002 (Rel. 71, Last updated, Version 5)
XX
DE Pea enation mosaic virus-2 65kDa viral replicase gene, complete cds.
XX
KW .
XX
OS Pea enation mosaic virus-2
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RP 1-4253
RX MEDLINE; 93139769.
RX PUBMED; 8423443.
RA Demler S.A., Rucker D.G., de Zoeten G.A.;
RT "The chimeric nature of the genome of pea enation mosaic virus: the
RT independent replication of RNA 2";
RL J. Gen. Virol. 74(Pt 1):1-14(1993).
XX
RN [2]
RX MEDLINE; 94231179.
RX PUBMED; 8176385.
RA Demler S.A., Borkhsenious O.N., Rucker D.G., de Zoeten G.A.;
RT "Assessment of the autonomy of replicative and structural functions encoded
RT by the luteo-phase of pea enation mosaic virus";
RL J. Gen. Virol. 75(Pt 5):997-1007(1994).
XX
RN [3]
RP 1-4253
RA Demler S.A.;
RT ;
RL Submitted (17-NOV-1993) to the EMBL/GenBank/DDBJ databases.
RL Steven A. Demler, Botany and Plant Pathology, Michigan State University,
RL Wilson Road, East Lansing, MI 48824-1312 USA
XX
DR SPTREMBL; Q84693; Q84693.
DR SPTREMBL; Q84694; Q84694.
DR SPTREMBL; Q84695; Q84695.
DR SPTREMBL; Q84696; Q84696.
XX
CC On Mar 8, 1994 this sequence version replaced gi:264097.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4253
FT /db_xref="taxon:193120"
FT /organism="Pea enation mosaic virus-2"
FT /specific_host="Pisum sativum"
FT /clone="pPER2d"
FT /lab_host="Pisum sativum"
FT 5'UTR 1. .20
FT CDS 21. .929
FT /codon_start=1
FT /db_xref="SPTREMBL:Q84693"
FT /function="unknown"
FT /product="33kDa protein"
FT /protein_id="AAA52183.1"
FT /translation="MNCVARIKRWFTPDFTPGEGVKSRAQLERELDPTWALLVCQERAR
FT RDADSIANEWYEGSMECNLLIPRPTTEDVFGPSIAPEPVALVEETTRSRAPCVDVPAEE
FT SCKSAEIDPVDLAKFDSLHRRLLAEANPCREMVLWVPPGLPAERDVLPRARGVIMIPEV
FT PASAHTLSVKVMEAVRLAQEVLASLAKRALEKRSTPTLTAQAQPEATLSGCDYPYQETG
FT AAAAWITPGCIAMELRAKFGVCKRTPANLEMGSRVARELLRDNCVTCRETTWYTSAIAV
FT DLWLTPTVVDLACGRRAADFW"
FT CDS <815. .2560
FT /codon_start=1
FT /db_xref="SPTREMBL:Q84694"
FT /note="protein is expressed as a frameshift fusion with the
FT first ORF on this sequence"
FT /function="RNA-dependent RNA polymerase"
FT /product="65kDa viral replicase"
FT /protein_id="AAA52184.1"
FT /translation="LCHLQGDHVVHQCHCCGPVVDPDRRRPGLWSARGGFLVGAVLPRL
FT GEDTSVRFDNLHPSIEVIKAARPRPTQRMSYQIDVVRPLGDFGVHNNSLVNLARGINER
FT VFYTDNARTEPLKPKVPFPSSRELKTFRVTPWTMDRVVESYTGSQRTRYANARDSILSN
FT PLSPKDARVKMFVKAEKINFTAKPDPAPRVIQPRDPRSNIVLAKYIKPLEPMLYKALGK
FT LYKYPAVAKGFNAVETGEIIAGKWRCFKDPVVVGLDASRFDQHVSVEALQFTHAVYRGF
FT IKSREFNNLLQMMYTNRGLGSAKDGFVRYKVKGRRMSGDMDTSLGNCVLMVLLTRNLCK
FT VLGIPHELFNNGDDCIVFFDRCHLEKFNNAVKTYFADLGFKMKVEPPVDVLEKIEFCQT
FT QPIYDGEKWRTVRCISSIGKDCSSVISWDQLEGWWNAIAQSGLAVCGGMPIYTSFYRWL
FT ARAGKSGTKCQSHPLWKNEGLNWYRMGMDLSHEVNVTPQARLSFFAGFGISPPMQVAIE
FT ALYDKLPPPSPHHGPPVKAVTQRVFTNYFTPESACVSMSTNEDNKSDFAVYGPVPTVMS
FT LCAQC"
FT misc_difference order(2593,2643,2771,2775)
FT /note="Four single base changes at 2593 (C to T), 2643
FT (deletion), 2771 (T to A) and 2775 (T to A) between this
FT sequence and that of ref (1) are sufficient to permit
FT transcripts of the former to systemically infect its host."
FT CDS 2763. .3473
FT /citation=[2]
FT /codon_start=1
FT /db_xref="SPTREMBL:Q84695"
FT /function="unknown"
FT /product="26kDa protein"
FT /protein_id="AAA52185.1"
FT /translation="MAVGKYMTIIINVNNDERKQPEGATGSSVRRGDNKRTRGNKPRSH
FT HPGSRERKGYNHPSPTPKNSKQGQLRTEAVQEHPKHGGTAFRRESGGSVHPSHPRRRAR
FT RGGDMAPRQHPPPPRERRTKTETQAERRAQALSVLPTLLDCIGGLDLGPAEVLLHCHRA
FT VRRQLRTGVQPIQPVPHVESTHRSSDPQLLESSTTCSANLQNDGAGRVIGGGIPTAIPE
FT GSDVEQVCHASHYG"
FT CDS 2797. .3549
FT /citation=[2]
FT /codon_start=1
FT /db_xref="SPTREMBL:Q84696"
FT /function="unknown"
FT /product="27kDa protein"
FT /protein_id="AAA52186.1"
FT /translation="MSITTSASNQKELLAALYGEVTIKELEETNLGVITPVRANEKVTI
FT TPLLPPKTQSRVSSVLKRFRSTRNTGGLLSVEKVVVVFTPHIPDDVLGEVEIWLHDSIL
FT PHLGSVGPRLKLKLSEGPKLLAFYPPYSIALGDSISGQPRSFSIVTELFEGNFAPGCSP
FT FSLFLMWSPRIEAVTHNYLSRPPRALPICRTMVRDALSEVASQQQYLKGAMSNRYAMPL
FT TTGDGQHRAMKGAPSALPPTGVCTQASK"
FT 3'UTR 3550. .4253
FT /citation=[2]
FT /evidence=EXPERIMENTAL
FT /note="Sequence in this regions is highly heterogenous
FT between individual cDNA clones. May be indicative of a
FT degenerate non-coding region."
FT misc_feature 3842. .>4253
FT /note="In several alternate clones, a fifth ORF (15kDa)
FT begins at nt 3842 and extends off the 3' terminus (ie no
FT stop codon). No functional significance can be attributed
FT to this ORF."
XX
SQ Sequence 4253 BP; 953 A; 1172 C; 1206 G; 922 T; 0 other;
U03563 Length: 4253 May 7, 2002 10:19 Type: N Check: 4494 ..
1 gggtatttat agagatcagt atgaactgtg tcgctaggat caagcggtgg
51 ttcacacctg acttcacccc tggcgagggc gtgaagtcta gagctcaact
101 ggaaagagag ctggatccca cctgggcgct tctcgtgtgc caagaacgag
151 cgcgtcgtga tgctgacagt attgctaatg agtggtacga gggcagcatg
201 gagtgcaacc tccttatccc tcggcccaca accgaggatg tatttggccc
251 ctccatcgcc cctgagcctg tggctctagt ggaggaaact acccgttccc
301 gcgcgccgtg cgtggatgtc cctgccgagg agtcctgtaa gtcagcggag
351 attgatcctg ttgatctcgc caagttcgac tccctccatc gtcgcctgtt
401 ggctgaagcc aacccttgca gggaaatggt tctgtgggtg cctcctggcc
451 taccagcaga gcgcgacgtc ctgcccaggg cacgtggggt gataatgatc
501 cccgaagtcc ctgcctctgc acataccttg tccgtgaagg ttatggaggc
551 tgtgcggttg gcacaggaag tcttggcatc ccttgccaag agggccttag
601 agaaaaggtc tacaccaacc cttaccgccc aggcccagcc agaggctacc
651 ctgtcggggt gcgactaccc gtatcaggag actggagcag cagccgcgtg
701 gataacgcct ggctgcattg ccatggagct cagagccaaa tttggcgtct
751 gcaaacgcac ccccgcaaac ttagagatgg ggagtcgcgt cgcccgcgag
801 ctcctgcggg ataactgtgt cacttgcagg gagaccacgt ggtacaccag
851 tgccattgct gtggacctgt ggttgacccc gaccgtcgtc gacctggcct
901 gtggtcggcg cgcggcggat ttttggtagg ggctgtgctg cctcggctgg
951 gggaagacac tagtgtgcgg tttgacaacc tgcaccccag catcgaggta
1001 atcaaggcgg ctaggccccg cccaacccag aggatgtcgt accaaatcga
1051 cgttgtgcgt cctcttggag attttggtgt gcacaacaac tcccttgtca
1101 acctagccag gggaattaat gaaagggtgt tctacacgga caatgctagg
1151 acagaacccc ttaagcctaa ggttcccttc ccctcatcac gggagctgaa
1201 aaccttcaga gtcacccctt ggaccatgga tagggttgtg gagagctaca
1251 ctgggtccca gcgcactcgc tatgctaatg cgcgggacag catattatcc
1301 aacccactga gtcctaaaga tgcgcgggtc aagatgtttg tcaaagctga
1351 aaagataaat ttcacagcca aacctgaccc cgcccctcgt gtgatacagc
1401 ctagggatcc acgatccaac attgtcctgg ctaaatacat caagcctttg
1451 gagccaatgt tgtacaaagc actggggaaa ctttacaagt accccgcagt
1501 tgctaagggg tttaacgcgg ttgagacggg ggagatcatc gccggcaagt
1551 ggcggtgctt caaagatcct gtcgtcgtgg gattagacgc ttcccgattt
1601 gatcagcatg tatctgtcga ggcgttgcag ttcacccacg cggtgtacag
1651 agggttcatc aagtcacggg agtttaacaa cctcctacag atgatgtaca
1701 ccaaccgtgg cctagggtcc gctaaggacg gattcgtccg ttacaaggtt
1751 aaaggtagac gcatgagcgg tgacatggac acctccttgg gcaactgtgt
1801 gctcatggtg ttgctcacca ggaacctttg caaggttcta ggcatcccgc
1851 acgagctctt caacaatggt gatgattgca tcgtcttttt cgatcgttgc
1901 cacttggaga agttcaacaa tgctgtcaag acttattttg cggacctagg
1951 gtttaagatg aaggtggaac cgccggttga cgtgttggag aaaatagagt
2001 tctgccaaac gcagcctatc tatgacgggg agaagtggcg caccgtgcgt
2051 tgcatctcga gtatcggaaa agattgctca tccgttatta gttgggacca
2101 attggagggg tggtggaatg ccatcgccca gagtggtctg gctgtgtgtg
2151 gcggaatgcc gatatacacg tcgttctacc ggtggctagc acgggccggt
2201 aagagtggga ccaagtgtca gtcacacccc ttgtggaaaa acgaggggtt
2251 gaattggtac aggatgggga tggacctttc tcatgaggtt aatgttaccc
2301 ctcaggcgcg cctgtctttc ttcgcgggtt ttggtatttc ccccccgatg
2351 caggtcgcca ttgaggcgct gtatgacaag ctgcctccac cgtcccccca
2401 ccatggtcct ccggttaagg ctgtaacaca gcgagtgttc accaattatt
2451 tcacgccgga aagcgcctgt gttagcatga gcacgaatga agacaacaaa
2501 tctgactttg ctgtttacgg ccctgtgcct acagtgatgt ctctttgtgc
2551 tcagtgttag gctcttaaat tttagcgatg gcgtgacacg gttacaccct
2601 gaattgacag ggtacagatc aagggaagcc ggggagtcac caacccaccc
2651 tgaatcgaca gggcaaaaag ggaagccggg caccgcccac gtggaatcga
2701 ccacgtcacc ttttcgcgtc gactatgccg tcaacaccct ttcggcccgc
2751 cagcctagga caatggcggt agggaaatat atgacgataa tcattaatgt
2801 caataacgac gagcgcaagc aaccagaagg agctactggc agctctgtac
2851 ggcgaggtga caataaaaga actcgaggaa acaaacctcg gagtcatcac
2901 cccggttcgc gcgaacgaaa aggttacaat cacccctctc ctacccccaa
2951 aaactcaaag cagggtcagc tccgtactga agcggttcag gagcacccga
3001 aacacggggg gactgctttc cgtagagaaa gtggtggtag tgttcacccc
3051 tcacatcccc gacgacgtgc taggagaggt ggagatatgg ctccacgaca
3101 gcatcctccc ccacctcggg agcgtcggac caagactgaa actcaagctg
3151 agcgaagggc ccaagctctt agcgttctac ccaccctact cgattgcatt
3201 gggggactcg atctcgggcc agccgaggtc cttctccatt gtcaccgagc
3251 tgttcgaagg caacttcgca ccggggtgca gcccattcag cctgttcctc
3301 atgtggagtc cacgcatcga agcagtgacc cacaactact tgagtcgtcc
3351 accacgtgct ctgccaattt gcagaacgat ggtgcgggac gcgttatcgg
3401 aggtggcatc ccaacagcaa tacctgaagg gagcgatgtc gaacaggtat
3451 gccatgcctc tcactacggg tgatggccag catagagcca tgaagggggc
3501 tcccagtgcc cttccaccaa cgggggtgtg tacccaggct tctaagtgag
3551 gcttcgcttc ccgccggaag accgcggcgg ttctgttcct cccacaggag
3601 tacggcaaca acccaccttg ggaaagtggg gatcccagca ctaactcctt
3651 taactaggcg ggcgtgttgg ttacagtacg aggggacagt acgcattgaa
3701 actgagcccc accacaactc tcatccacag ggtggttggg acgcaggtgt
3751 cggagggatc gccagccctc aggatagtga gctcccgcag agggataagc
3801 tgtctccctg cgacgtagta gtagaacacg tgggataggg gatgaccttg
3851 tcgaccgttt gtcggtcccc tgctccttag agctggcaag gcgcccattg
3901 gttctacatt tctaccaaag ttggtggtgg atgtctcgcc caaaaagatc
3951 ataaacgcgc gggataaggc cctctccacc ttcgccgggt aaggctagag
4001 tcagcgctgc atgactataa cttgcggccg atccagttgc acgactggtg
4051 gtccccccca gtgtctcggt agtctgccga gtgggcggtg gtcggattcc
4101 accacaccct gccacgaggt gcgtggagac ttggccagtc taggctcgtc
4151 gtaattagta gcagcgacgt taatcaaccc gtccgggcat acaataggac
4201 cggttgtgct tcttcctctc cttcttagcc aggtggttac ctccctggcg
4251 ccc