Sequence of DPV Cowpea mottle virus
Cowpea mottle virus polyprotein genes, complete cds.
ACC No: U20976
Dated: 2002-01-28 | Length: 4029 | CRC: 849439656
!!NA_SEQUENCE 1.0
ID CM20976 standard; RNA; VRL; 4029 BP.
XX
AC U20976; U07227;
XX
SV U20976.1
XX
DT 10-JUL-1995 (Rel. 44, Created)
DT 28-JAN-2002 (Rel. 70, Last updated, Version 9)
XX
DE Cowpea mottle virus polyprotein genes, complete cds.
XX
KW .
XX
OS Cowpea mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4029
RX MEDLINE; 96068818.
RA You X.J., Kim J.W., Stuart G.W., Bozarth R.F.;
RT "The nucleotide sequence of cowpea mottle virus and its assignment to the
RT genus Carmovirus";
RL J. Gen. Virol. 76(Pt 11):2841-2845(1995).
XX
RN [2]
RP 1-4029
RA Stuart G.W.;
RT ;
RL Submitted (13-FEB-1995) to the EMBL/GenBank/DDBJ databases.
RL Gary W. Stuart, Life Sciences, Indiana State University, Terre Haute, IN
RL 47809, USA
XX
DR SPTREMBL; Q66123; Q66123.
DR SPTREMBL; Q89595; Q89595.
DR SPTREMBL; Q89761; Q89761.
DR SPTREMBL; Q89801; Q89801.
DR SPTREMBL; Q89875; Q89875.
DR SPTREMBL; Q89922; Q89922.
XX
CC On Dec 19, 1995 this sequence version replaced gi:1039368.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4029
FT /db_xref="taxon:12627"
FT /organism="Cowpea mottle virus"
FT /specific_host="Vigna unguiculata"
FT CDS 35. .715
FT /codon_start=1
FT /db_xref="SPTREMBL:Q66123"
FT /note="ORF1; Method: conceptual translation supplied by
FT author"
FT /protein_id="AAC54602.1"
FT /translation="MLIQFGTMPPVEVQGPPRVTPWSSPSAIGKFLVGVCGGLGDAWAD
FT TVTRNRTTHINAFERFGEFPIEWAINSTGDEVFEPERPTREVGKGKRVINRHAKGYFLK
FT EAVTACRLQFNGVPMSTNANLLGVRKFLAGFCQEHGLTNQQSLRLVNAATPLVMTANQE
FT DVEYMKLFNCVQLNEKRAEYLDAQVVHTPIRQLVARPLSGEKWSQWIAHLGGFRPATGF
FT RVSN"
FT CDS 776. .2263
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89801"
FT /note="putative; Method: conceptual translation supplied by
FT author"
FT /product="RNA replicase"
FT /protein_id="AAC54603.1"
FT /translation="MLITPRTGSHKVRKMGHVNFMGNGKLFGVHNASLVNLRRGLLERV
FT FYVEREGKLVPPPEPIPGIFSRLAGFKSKLKKIVGTHSRISDDAFVALYHGRRNTIYQN
FT AVDSLRIGGVQRKDSYLSTFIKAEKIPIYRKPDPAPRVIQPRNPRYNVEVGRYLRPFEH
FT HLYRGIDEIMGGPTVIKGYDVNQIGNIMEKASGQFVRPVAVGFDMSRFDQHVSFDALQF
FT EHGVYLQHFGGDRFLAKLLSWQLNNKGFANLPEGKVKYTRRGCRMSGDMNTAMGNCLLA
FT CAITWDLMKGIKYRLLNNGDDCVVITESKNVDFVCKQLERFRDYGFTCIAEEPVYELEK
FT LEFCNLHPLYDGSSWTVMRKPSVSLAKDTYCVAGWNNTKDAASWLNAIGQCGAAITGGI
FT PIQQAYYQCLIRNFPRGGWLQKHHHTMDSGLYWLALKKGRSDPVPVAPEARHSFYLTTG
FT VTPDAQIAVEEYYNNLHLALEFEPEVSPTSLSTTSAD"
FT CDS 2287. .2496
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89922"
FT /note="putative"
FT /product="movement protein"
FT /protein_id="AAC54604.1"
FT /translation="MDQTTEVRGRSRSRQRSGSSDSRKPKNNKQVQVASEAVQRRNDKP
FT LRGHHGGDFVIVAHTVTLNINFNI"
FT CDS 2411. .2677
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89595"
FT /note="putative; Method: conceptual translation supplied by
FT author"
FT /product="movement protein"
FT /protein_id="AAC54605.1"
FT /translation="MINHFAAITGVILLLWLIRSHSILTSIYEQNTPRVITYANLLLLL
FT IAYCYFCSTQSVSYVVSHSEPVVNSKVVYISVGTSPPSLQVSE"
FT CDS 2674. .3777
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89761"
FT /note="Method: conceptual translation supplied by author"
FT /product="capsid"
FT /protein_id="AAC54606.1"
FT /translation="MNGNALTITQLAKKAATQGRASLSKNQKKRLDNANTNPIKSVTRT
FT ARISTRKVPAATSTTITNGVPNYAVRQNKPVIQHVELWGTLMSNTTESPAYITRTLNPS
FT DPATFNWVQPLSTGYDMYRLVRCEIIYTPRCAVTTTGSVVLAYDPDASDVNPDNVTDLL
FT NMAGAESGSAYSPLSLVPNIKQIDRYIRDNSTSDPKLVDAGKILVASYGQQTSTAPFAL
FT GEIRFAYTLQLIVPQPHSTGVQRLGSAPPVGRACIRTLTSVVNTTSRLADYTLTLKTAG
FT SYMISAVDASSHTKHKANQLWKVSSGRSYWSRATNVDIRSALKSGATITFEAATDSNAE
FT VYVVRDSGINDTIVVPSLHVPVNPKSL"
FT CDS 2678. .3454
FT /codon_start=1
FT /db_xref="SPTREMBL:Q89875"
FT /note="ORF6; Method: conceptual translation supplied by
FT author"
FT /protein_id="AAC54607.1"
FT /translation="METHSPSPSSLRKPPHRGVPHYRRIKRSGWTMQTQTPSSPSHEPH
FT GSPQGRSLQQPAPPSQTGCLTMRFVRTSLLSSMLSYGVLLCQILLSPLLISPGHSTQVT
FT QQLSTGSNPSLQGMICTDSFVVRSYTHLGVPLRRRDQWCWLMIRTLVMSILIMSPIFSI
FT WQVLNLVLPIALYRLSPISSRLIATFVTTALATPSLWMLGRYLLLAMASKRALHHLHSG
FT KSGSPTLSNSLSRNLIPLGCSGWGVPPQSVGPAFAR"
XX
SQ Sequence 4029 BP; 1021 A; 1021 C; 1048 G; 938 T; 1 other;
U20976 Length: 4029 February 5, 2002 12:10 Type: N Check: 7679 ..
1 nggtatcgtt agccagatat ccacttctct cagcatgttg atccaattcg
51 gaacaatgcc acctgtagaa gttcaggggc ccccgagggt taccccttgg
101 tcgagcccta gcgccatcgg caaattcctc gtcggcgtgt gtggaggcct
151 aggtgatgcc tgggccgaca ctgtcacacg gaaccggact acgcacatca
201 acgctttcga gcggtttggt gaattcccaa tagaatgggc aatcaatagt
251 accggggatg aggtttttga accggaaaga cccaccagag aggtgggcaa
301 gggcaagcgg gtcatcaata ggcacgctaa agggtacttc ctcaaagagg
351 ccgtcactgc atgtcggctt cagttcaacg gagtgcccat gtccacgaac
401 gccaatctgc tgggtgttcg gaagttcctt gcaggttttt gccaggaaca
451 tgggttgacc aaccaacaat ctctgaggtt ggtcaatgct gctacacccc
501 tcgtgatgac ggccaaccaa gaggacgtcg agtatatgaa gctgttcaac
551 tgcgtgcagc ttaatgagaa gagggctgag tatcttgatg ctcaggtagt
601 gcacaccccg attcgacaac tggtcgctcg ccccttgtcc ggcgagaagt
651 ggtcacagtg gatagctcat ctgggtgggt tcagacctgc cacgggcttc
701 cgcgtgtcca actaggggtg cctaaggcgt gtgccagggt ttaatactag
751 tatagttcgt ggcgaacacc ctgacatgct gatcacgcct aggacaggaa
801 gccacaaagt ccgcaaaatg gggcatgtaa atttcatggg gaacggcaag
851 ctcttcgggg tccacaatgc aagtttagtc aaccttcgaa gagggttgct
901 tgagcgggtg ttctatgtgg agcgcgaggg caagttagtg cccccccctg
951 aacccattcc gggcatattt agtaggttag cggggttcaa aagcaaactg
1001 aagaagattg tagggactca ttccaggatc agcgacgacg ctttcgttgc
1051 tttgtatcat ggcaggagga acacaatcta tcagaatgcc gtggactcct
1101 tacgtatagg tggagtgcag aggaaagatt catatttgag cactttcatc
1151 aaagctgaga aaatacccat ctaccgcaag cctgaccctg ctcccagggt
1201 gatacaaccg cgtaatccaa ggtacaatgt ggaggtgggg aggtatttac
1251 ggccctttga gcatcatctt taccgaggca tagatgagat tatgggggga
1301 ccgactgtga ttaaaggcta cgacgtgaac cagataggaa atatcatgga
1351 gaaagcgtcg ggacaattcg tccgacccgt agccgtgggc tttgatatgt
1401 cacgatttga ccaacatgtg tcctttgacg ccctccagtt tgaacatgga
1451 gtatatttac aacattttgg aggcgaccgg ttcctggcca agttattgtc
1501 atggcaattg aacaacaaag ggtttgccaa cttgccagaa gggaaagtca
1551 aatacacccg ccgagggtgc aggatgagtg gggacatgaa cacagctatg
1601 ggcaattgcc tgctggcttg tgctattacg tgggacctaa tgaaggggat
1651 caagtaccgc ttgcttaaca acggagatga ctgtgtggtt attaccgagt
1701 ccaagaacgt tgatttcgta tgcaagcaat tggaacgatt ccgcgactat
1751 gggtttacgt gcatagctga ggaaccagtg tatgagttgg aaaagctgga
1801 gttctgtaat ctacatccac tgtatgatgg ctcttcctgg acggtgatgc
1851 ggaaaccaag cgtttcattg gctaaggaca cctattgtgt ggcaggatgg
1901 aacaacacca aggatgcagc cagttggctc aatgccattg gtcaatgtgg
1951 tgcagccatc acaggcggta tacccataca gcaagcgtat tatcagtgtt
2001 taatccgcaa cttcccccgg ggtggatggt tacaaaaaca ccaccacacc
2051 atggatagcg ggttgtattg gcttgctctc aaaaagggac gaagcgatcc
2101 ggttccagtg gctcctgagg cacgccatag tttttactta actactggcg
2151 tcactccgga tgcccaaata gcggtggaag agtactacaa taacctccac
2201 cttgcgctcg agtttgaacc ggaggtatcg ccaacctcac tctcgaccac
2251 ctcagcggac tgatttaacg tttgccaagc tcatttatgg atcaaacaac
2301 ggaagttcgg ggtagaagca gaagccggca gcgatcaggg tccagcgact
2351 ctcggaagcc aaagaacaat aagcaggtgc aggtagcctc ggaggccgtt
2401 cagcgtcgaa atgataaacc acttcgcggc catcacgggg gtgattttgt
2451 tattgtggct catacggtca cactcaatat taacttcaat atatgagcag
2501 aacaccccca gggtaattac ctacgccaat ctcttgcttt tgttgatcgc
2551 atattgctat ttctgctcaa cccaaagtgt tagctacgtt gtctctcact
2601 cagaacctgt agtaaatagt aaagttgttt acatttctgt tggaacttct
2651 cctccctctc ttcaagtgtc ggaatgaatg gaaacgcact caccatcacc
2701 cagctcgcta agaaagccgc cacacagggg cgtgcctcac tatcgaagaa
2751 tcaaaagaag cggctggaca atgcaaacac aaaccccatc aagtccgtca
2801 cacgaaccgc acggatctcc acaaggaagg tccctgcagc aaccagcacc
2851 accatcacaa acggggtgcc taactatgcg gttcgtcaga acaagcctgt
2901 tatccagcat gttgagttat ggggtactct tatgtcaaat actactgagt
2951 cccctgctta tatcaccagg acactcaacc caagtgaccc agcaactttc
3001 aactgggtcc aacccctctc tacagggtat gatatgtacc gactcgttcg
3051 ttgtgagatc atatacacac ctcggtgtgc cgttacgacg acgggatcag
3101 tggtgctggc ttatgatccg gacgctagtg atgtcaatcc tgataatgtc
3151 accgatcttc tcaatatggc aggtgctgaa tctggttctg cctatagccc
3201 tctatcgctt gtccccaata tcaagcagat tgatcgctac attcgtgaca
3251 acagcactag cgaccccaag cttgtggatg ctgggaagat acttgttgct
3301 agctatggcc agcaaacgag cactgcacca tttgcactcg gggaaatccg
3351 gttcgcctac actctccaac tcattgtccc gcaacctcat tccactgggg
3401 tgcagcggtt ggggagtgcc cccccagtcg gtagggcctg cattcgcacg
3451 ttaaccagcg tggtcaacac tacttccagg ttagctgact acacgctaac
3501 actgaagaca gctggttcgt acatgatttc tgcggttgat gcttcctcgc
3551 atacaaagca taaagcaaac caactttgga aggtttcgag tggaaggagt
3601 tactggagcc gggcaaccaa tgttgatatt cgctcggccc tcaaatccgg
3651 ggccaccatc accttcgagg ctgctactga tagtaacgcg gaggtgtatg
3701 tcgtgcgtga cagtggcata aacgacacta ttgtcgtccc tagcctgcat
3751 gtgccggtaa acccaaaatc tctgtgataa acttctggcc ctccatgggg
3801 tgcgcgtccg caactttgcg cagtaccacg gacatccaga agtgccttgc
3851 ggggcgcgtc actgaggcca aaaatagagt gtagcaactc cctctgttgg
3901 ggagccaagt aggacctact aacaggctgt ctgagcctac ctagcgtact
3951 gggacagaaa tccttcgggt ggggtgtcct ggaacataat cagataatga
4001 taggggtggt agcatgccac ccccccccc