Sequence of DPV Hordeum mosaic virus

Hordeum mosaic virus polyprotein mRNA, partial cds.

ACC No: U30616

Dated: 2000-03-04 | Length: 2016 | CRC: -1099391000

                !!NA_SEQUENCE 1.0
ID   HMU30616   standard; RNA; VRL; 2016 BP.
XX
AC   U30616;
XX
SV   U30616.1
XX
DT   23-JAN-1997 (Rel. 50, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 2)
XX
DE   Hordeum mosaic virus polyprotein mRNA, partial cds.
XX
KW   .
XX
OS   Hordeum mosaic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Rymovirus.
XX
RN   [1]
RP   1-2016
RX   MEDLINE; 97128987.
RA   Salm S.N., Rey M.E., Robertson N.L., French R., Rabenstein F., Schubert J.;
RT   "Molecular cloning and nucleotide sequencing of the partial genomes of
RT   Agropyron and Hordeum mosaic viruses, two members of the Rymovirus genus in
RT   the taxonomic family Potyviridae";
RL   Arch. Virol. 141(11):2115-2127(1996).
XX
RN   [2]
RP   1-2016
RA   French R.;
RT   ;
RL   Submitted (29-JUN-1995) to the EMBL/GenBank/DDBJ databases.
RL   Roy French, USDA, ARS, 426 Plant Science Hall, Lincoln, NE 68583, USA
XX
DR   SPTREMBL; O12673; O12673.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2016
FT                   /db_xref="taxon:41764"
FT                   /organism="Hordeum mosaic virus"
FT                   /strain="ATCC PV 81"
FT   CDS             <1. .1840
FT                   /codon_start=2
FT                   /db_xref="SPTREMBL:O12673"
FT                   /note="includes coat protein"
FT                   /product="polyprotein"
FT                   /protein_id="AAB40941.1"
FT                   /translation="YDAHLKGPWTVGITKFKGRWNDFLRLLPDGWVYCDADGSQFDSSL
FT                   TPYLINAVLNLRLQFMEDWAIGKECLANLYTEIVYTPIATPDGSVVKKYRGNNSGQPST
FT                   VVDNTLMVVLAMQYAISKYGLGLESTDTYIRYFANGDDLLIAIHPDHEALLDTLKEHFG
FT                   ELGLNYDFTSRTRDRSELWFMSHQGKLIDDLYIPMLERDRVVAILETGIRSHEPEFQMD
FT                   AINAAIIEAWGDDELIHHIRKFYSWLLEQEPYKSLADCGRAPYLAETALRKLYTDQDAT
FT                   QELLDLYANSMLELPTFDEPTLVFHEADDKTQPKAKHQQNPPPSDSGNKSGATDNNSGK
FT                   DKSGDDKSKQLAKAQTGEKKRQENEKRVMQSGGDDADVSLKDDNKTFEVPTVDVINKKL
FT                   RMPKYKGKALVNADHLMKYSPDQRDLSNKRATQRQLDNWVENIVKDYNVDEGKIDIVLN
FT                   GFMVWALDNGTSPNISGTWLMMDGEKQKEYPLEPIVKHAQPTLRQIMMHFSDAATAYIV
FT                   LRNTKGRYMPGYGLKRNLNDMNLAPYAFDFYGITSETPNRAREVHMQMKAAAIRGKVNR
FT                   PFGLDGPVASGSEDTERHTVDDVKHGTHSFYGAGMN"
FT   polyA_site      2016
FT                   /note="13 A nucleotides"
XX
SQ   Sequence 2016 BP; 645 A; 396 C; 495 G; 480 T; 0 other;

U30616  Length: 2016  December 21, 2001 15:58  Type: N  Check: 8490  ..

       1  ttatgacgca catcttaagg gcccatggac tgttggtata accaaattta
      51  aaggcaggtg gaacgacttt ctacgattac tgccagatgg atgggtgtat
     101  tgcgatgctg acggttcaca attcgatagt tcactcacgc cttatctgat
     151  aaatgcagtg ttaaatttgc gattacaatt catggaggat tgggccattg
     201  ggaaggagtg tctcgctaac ttgtacactg aaattgtata cactcctata
     251  gcaacacctg atggatcagt ggttaagaag taccggggaa acaacagcgg
     301  tcaaccgtca acagtggttg acaacacatt aatggtggtg ttggcgatgc
     351  agtatgcaat tagcaaatac ggccttggtt tagagtcaac ggatacgtac
     401  atccggtact ttgccaacgg cgatgatctt ctaatagcca tacaccctga
     451  tcatgaagca ctcttggaca cacttaaaga gcactttggt gaacttggct
     501  tgaattacga cttcacctcg cgcacaagag accgtagtga attgtggttc
     551  atgtcccacc aaggaaaatt aattgatgat ttgtacatac caatgctgga
     601  aagggataga gtcgtagcaa ttctcgagac tgggatccgc agtcatgaac
     651  cagagttcca gatggatgcg ataaatgcag caattattga agcatgggga
     701  gatgatgaac taattcacca catcaggaag ttttactcat ggttactaga
     751  gcaagaacca tacaaatcac ttgctgattg tggccgagct ccatacctgg
     801  ctgagacagc gctacggaaa ttgtacacgg accaagatgc gacgcaagaa
     851  ttgcttgatt tgtacgccaa tagcatgttg gaattaccaa catttgatga
     901  accaactctt gtttttcacg aagcagatga taaaacacag ccaaaagcaa
     951  agcaccagca aaacccaccc ccaagcgata gtggcaataa aagcggggca
    1001  acagacaaca atagtgggaa agacaagagt ggcgatgata agtcaaagca
    1051  gctagcgaaa gctcaaactg gagagaagaa gaggcaagag aacgagaaaa
    1101  gagttatgca aagcggtggt gacgacgctg atgtgagcct caaggacgat
    1151  aacaagacat tcgaagttcc aactgtcgac gttataaata agaaacttcg
    1201  aatgccaaag tacaaaggca aagcgcttgt gaacgctgat catttgatga
    1251  aatattcacc agatcagcgg gatttgtcga acaagcgcgc gacacaacgc
    1301  caactggata attgggttga gaatatagtc aaggactata atgtggatga
    1351  aggaaagata gacatcgtgc taaacggttt tatggtttgg gcattggata
    1401  atggaacttc accaaatatt tcaggaactt ggttgatgat ggatggagag
    1451  aaacaaaaag agtatccact cgagccgatt gtcaaacatg cacaaccaac
    1501  attgcggcaa atcatgatgc attttagcga tgccgcaaca gcgtacattg
    1551  tgttacgcaa cacgaaagga agatatatgc ctgggtatgg tctgaaaaga
    1601  aatttaaatg acatgaacct agcgccatac gcatttgact tctacggaat
    1651  aacatcagag acgcctaaca gagcacgtga agtgcatatg cagatgaaag
    1701  ctgcagcaat aagaggcaag gtgaataggc cctttggctt ggatggacca
    1751  gtagctagtg gaagtgaaga cactgaacgt cacacggttg atgacgtgaa
    1801  gcatggcaca cactcgttct atggagcggg tatgaactaa atgcttgtat
    1851  tcctatatct atattagtgt cataatccaa catgggaaat ctttctctgt
    1901  ctgacatgat ttgtgtggtc accacgattg tcatgtacgg attcaccgga
    1951  tggtttcgaa tgtacaccag agtgttttac catgcgcgtg ccaaattcgt
    2001  tgctgtgatg gagaga