Sequence of DPV Infectious bursal disease virus
Infectious bursal disease virus structural polyprotein gene, complete cds.
ACC No: U30818
Dated: 2000-03-04 | Length: 3254 | CRC: 1176625347
!!NA_SEQUENCE 1.0
ID IBU30818 standard; RNA; VRL; 3254 BP.
XX
AC U30818;
XX
SV U30818.1
XX
DT 31-JUL-1996 (Rel. 48, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE Infectious bursal disease virus structural polyprotein gene, complete cds.
XX
KW .
XX
OS Infectious bursal disease virus (Gumboro virus)
OC Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus.
XX
RN [1]
RA Dybing J.K.;
RT "Sequence analysis of infectious bursal disease virus of serotype 2 and
RT expression of the vp5 cdna";
RL Thesis (1992), Pathology & Microbiology, Atlantic Veterinary College, UPEI
XX
RN [2]
RX MEDLINE; 91335781.
RA Kibenge F.S., McKenna P.K., Dybing J.K.;
RT "Genome cloning and analysis of the large RNA segment (segment A) of a
RT naturally avirulent serotype 2 infectious bursal disease virus";
RL Virology 184(1):437-440(1991).
XX
RN [3]
RP 1-3254
RX MEDLINE; 96305317.
RA Kibenge F.S., Nagarajan M.M., Qian B.;
RT "Determination of the 5' and 3' terminal noncoding sequences of the
RT bi-segmented genome of the avibirnavirus infectious bursal disease virus";
RL Arch. Virol. 141(6):1133-1141(1996).
XX
RN [4]
RP 1-3254
RA Kibenge F.S.;
RT ;
RL Submitted (03-JUL-1995) to the EMBL/GenBank/DDBJ databases.
RL Frederick S. Kibenge, Atlantic Veterinary College, UPEI, 550 University
RL Avenue, Charlottetown, P.E.I. C1A 4P3, Canada
XX
DR SPTREMBL; Q82663; Q82663.
DR SWISS-PROT; P27276; POLG_IBDVO.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3254
FT /chromosome="segment A"
FT /db_xref="taxon:10995"
FT /organism="Infectious bursal disease virus"
FT /specific_host="Gallus domesticus"
FT /strain="OH"
FT /lab_host="Colobus polykomos"
FT repeat_unit 1. .15
FT repeat_region 10. .41
FT RBS 69. .79
FT CDS 98. .535
FT /codon_start=1
FT /db_xref="SPTREMBL:Q82663"
FT /note="orf"
FT /protein_id="AAC55350.1"
FT /translation="MVSRDQTNDRSDDKPDGSHPTDCSVHTEPSDANDRTGVHPGRHPG
FT EAHTQVRNLDLQLDCRGHRVRTNCLFPWIPWFSCRCSLHTAEQWELPVRPDAPDSAEPA
FT CELQLLQTSEQEPNRAVKHTPWWRLCSKWDHKRGDLPRKPE"
FT CDS 132. .3170
FT /codon_start=1
FT /db_xref="SWISS-PROT:P27276"
FT /product="structural polyprotein"
FT /protein_id="AAC55351.1"
FT /translation="MTNLMDHTQQIVPFIRSLLMPTTGPASIPDDTLEKHTLRSETSTY
FT NLTVGDTGSGLIVFFPGFPGSVVGAHYTLQSSGSYQFDQMLLTAQNLPVSYNYCRLVSR
FT SLTVRSSTLPGGVYALNGTINAVTFQGSLSELTDYSYNGLMSATANINDKIGNVLVGEG
FT VTVLSLPTSYDLSYVRLGDPIPAAGLDPKLMATCDSSDRPRVYTVTAADEYQFSSQLIP
FT SGVKTTLFTANIDALTSLSVGGELIFSQVTIHSIEVDVTIYFIGFDGTEVTVKAVATDF
FT GLTTGTNNLVPFNLGGPTSEITQPITSMKLEVVTYKRGGTAGDPISWTVSGTLAVTVHG
FT GNYPGALRPVTLVAYERVAAGSVVTVAGVSNFELIPNPELAKNLVTEYGRFDPGAMNYT
FT KLILSERDRLGIKTVWPTREYTDFREYFMEVADLNSPLKIAGAFGFKDIIRAIRKIAVP
FT VVSTLFPPAAPLAHANREGVDYLLGDEAQAASGTARGASGKARAASGRIRQLTLAADKG
FT YEVVANMFQVPQNPIVDGILASPGILRGAHNLDCVSKEGATLFPVVITTLEDELTPKAL
FT NSKMFAVIEGAREDLQPPSQRGSFIRTLSGHRVYGYAPDGVLPLETGRDYTVVPIDDVW
FT DDSIMLSQDPIPPIVGNSGNLAIAYMDVFRPKVPIHVAMTGALNASEIESVSFRSTKLA
FT TAHRLGMKLAGPGDYDINTGPNWATFIKRFPHNPRGWDRLPYLNLPYLPPTAGRQFHLA
FT LAASEFKETPELEDAVRAMDAAANADPLFRSALQVFMWLEENGIVTDMANFALSDPNAH
FT RMKNFLANAPQAGSKSQRAKYGTAGYGVEARGPTPEEAQRAKDARISKKMETMGIYFAT
FT PEWVALNGHRGPSPGQLKYWQNTREIPEPNEDYPDYVHAEKSRLASEEQILRAATSIYG
FT APGQAEPPQAFIDEVARVYETNHGRVPNQEQMKDLLLTAMEMKHRNPRRAPPKPKPKPN
FT APSQRPPGRLGRWIRTVSDEDLE"
FT repeat_region 3172. .3243
FT stem_loop 3207. .3243
FT repeat_unit 3240. .3254
XX
SQ Sequence 3254 BP; 844 A; 929 C; 857 G; 624 T; 0 other;
U30818 Length: 3254 September 20, 2002 15:01 Type: N Check: 6059 ..
1 ggatacgatc ggtctgaacc ccgggggagt cacccgggga caggcaatca
51 ccgccttgtt ccaggttggg actcctcctt ctgctatgct accattgatg
101 gtgagtagag atcagacaaa cgaccgcagc gatgacaaac ctgatggatc
151 acacccaaca gattgttccg ttcatacgga gccttctgat gccaacgacc
201 ggaccggcgt ccatcccgga cgacaccctg gagaagcaca cactcaggtc
251 cgaaacctcg acctacaact tgactgtcgg ggacacaggg tcaggactaa
301 ttgtcttttt ccctggattc cctggttcag ttgtaggtgc tcactacaca
351 ctgcagagca gtgggagcta ccagttcgac cagatgctcc tgacagcgca
401 gaacctgcct gtgagctaca actattgcag actagtgagc aggagcctaa
451 ccgtgcggtc aagcacactc cctggtggcg tttatgctct aaatgggacc
501 ataaacgcgg tgaccttcca aggaagcctg agtgagttga ctgactacag
551 ctacaacggg ctgatgtcag ccactgcaaa catcaacgac aagatcggga
601 atgtccttgt tggggaaggg gtgactgtcc taagtctacc aacctcatat
651 gacctcagtt atgtgaggct tggcgacccc atcccagcag caggacttga
701 cccaaagttg atggccacgt gcgacagtag tgatagaccc agagtctaca
751 cagtaacagc cgccgatgag taccaattct cgtcgcaact catcccaagt
801 ggagtgaaga ctacactgtt caccgccaac atcgatgctc ttacaagcct
851 cagtgttggt ggtgagctta tcttcagcca agtaacgatc cacagcattg
901 aagtggacgt caccatttac ttcattgggt tcgacgggac agaggtcaca
951 gtcaaagctg ttgcaacaga ctttgggctg acaactggga cgaacaacct
1001 tgtgccattc aaccttggtg gtccaacaag tgagatcacc caacccatca
1051 cttccatgaa actagaggta gtcacctata aaagaggagg cactgctggc
1101 gatccgatat catggacagt gagcgggaca ctagctgtga cagtgcacgg
1151 tggcaactat cctggggctc tccgtcccgt caccctagtg gcctatgagc
1201 gagtggcagc aggatccgtc gtcacagttg caggggtgag caacttcgag
1251 ctgatcccaa accctgagct tgccaagaac ctagtcacag aatacggccg
1301 ctttgaccca ggagcgatga actacaccaa actaatactg agtgagagag
1351 atcgtcttgg cataaagact gtctggccaa ccagggagta cactgacttt
1401 agagagtact tcatggaagt tgccgatctc aactcaccct taaagattgc
1451 aggtgcgttt ggttttaagg acataatccg agccatccgg aagattgcgg
1501 taccagtggt atccacactc ttcccaccag ctgcacccct agcccatgca
1551 aatcgagaag gtgtggatta ccttctgggc gatgaggcac aggcagcctc
1601 agggacggct cgaggcgcgt caggaaaagc cagggctgcc tcaggaagaa
1651 taaggcagct gactctcgcc gctgacaagg ggtacgaggt ggtcgccaac
1701 atgttccagg tgccccagaa tcccattgta gatggaattc tggcatctcc
1751 aggaatcctg cgtggtgccc acaacctcga ctgcgtgtca aaagaaggag
1801 ccactctctt ccccgtggtc atcaccacac tcgaggatga gctgactccc
1851 aaggcactga acagcaaaat gtttgctgtc attgaaggcg cacgagagga
1901 ccttcaacca ccatcccaac ggggatcctt tattcgaact ctctccggcc
1951 atagagtcta tggttacgct ccagacggtg tgctaccgct cgagacggga
2001 agagactaca ccgttgtccc aattgatgat gtgtgggacg acagcataat
2051 gctgtcacag gaccccatac ctccaattgt ggggaacagc ggcaacctgg
2101 ccatagcgta catggatgtc ttcaggccta aagtccccat ccatgtggcc
2151 atgaccgggg ccctcaacgc cagcgagatc gagagtgtaa gctttcgcag
2201 taccaaactt gccactgccc accgacttgg catgaagttg gccggccctg
2251 gagattatga catcaacaca gggcccaact gggcaacgtt catcaaacgt
2301 ttccctcaca atccccgagg ctgggacagg ttgccctacc tcaacctacc
2351 ctaccttcca ccgacagcag gacgccaatt ccacctagcc ctggcagcat
2401 ctgagttcaa agagactccc gaacttgagg acgctgtacg tgcaatggat
2451 gccgctgcaa acgctgaccc attgttccgc tcagcactcc aagtcttcat
2501 gtggctggaa gaaaacggga ttgtgactga catggccaac tttgccctca
2551 gtgacccaaa cgcacacagg atgaagaatt tcctagccaa cgctccccag
2601 gccgggagca agtcacagag agccaagtat ggcacggcag gctacggagt
2651 ggaggctcga ggccccacac cagaagaggc acagagggca aaagacgcgc
2701 ggatctccaa gaagatggaa acaatgggca tctacttcgc aacgccagaa
2751 tgggtggcac tcaatgggca tcgagggcca agtcccggcc aactcaagta
2801 ttggcaaaac acacgagaga taccggaacc caacgaggac tatccagact
2851 acgtgcacgc ggagaagagc cggttggcat cagaagaaca gatcttaagg
2901 gcagccacgt cgatctacgg ggctccagga caggctgaac caccccaggc
2951 cttcatagac gaagtagcca gggtctatga aacaaaccac gggcgtgtcc
3001 caaaccaaga gcagatgaag gacctgctct tgactgcgat ggagatgaag
3051 catcgcaatc ccaggcgggc tccaccaaag ccgaagccaa aacccaatgc
3101 tccatcacag aggccccctg gtcggctggg ccgctggatc aggacggtct
3151 ctgacgagga cttggagtga ggctcctggg agtctcccga caccacccgc
3201 gcaggtgtgg acaccaattc ggccctatac catcccaaat ggatcgttcg
3251 cggt