Sequence of DPV Infectious bursal disease virus
Infectious bursal disease virus RNA-directed RNA polymerase gene, complete cds.
ACC No: U30819
Dated: 2000-03-04 | Length: 2820 | CRC: -176141456
!!NA_SEQUENCE 1.0 ID IBU30819 standard; RNA; VRL; 2820 BP. XX AC U30819; XX SV U30819.1 XX DT 31-JUL-1996 (Rel. 48, Created) DT 04-MAR-2000 (Rel. 63, Last updated, Version 4) XX DE Infectious bursal disease virus RNA-directed RNA polymerase gene, complete DE cds. XX KW . XX OS Infectious bursal disease virus (Gumboro virus) OC Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus. XX RN [1] RA Dybing J.K.; RT "Sequence analysis of infectious bursal disease virus of serotype 2 and RT expression of the vp5 cdna"; RL Thesis (1992), Pathology & Microbiology, Atlantic Veterinary College, UPEI XX RN [2] RP 1-2820 RX MEDLINE; 96305317. RA Kibenge F.S., Nagarajan M.M., Qian B.; RT "Determination of the 5' and 3' terminal noncoding sequences of the RT bi-segmented genome of the avibirnavirus infectious bursal disease virus"; RL Arch. Virol. 141(6):1133-1141(1996). XX RN [3] RP 1-2820 RA Kibenge F.S.; RT ; RL Submitted (03-JUL-1995) to the EMBL/GenBank/DDBJ databases. RL Frederick S. Kibenge, Atlantic Veterinary College, UPEI, 550 University RL Avenue, Charlottetown, P.E.I. C1A 4P3, Canada XX DR SPTREMBL; Q82664; Q82664. XX FH Key Location/Qualifiers FH FT source 1. .2820 FT /db_xref="taxon:10995" FT /organism="Infectious bursal disease virus" FT /specific_host="Gallus domesticus" FT /strain="OH" FT /cell_type="B-cell precursor" FT /cell_line="Vero" FT 5'UTR 1. .111 FT stem_loop 25. .89 FT RBS 80. .93 FT CDS 112. .2751 FT /codon_start=1 FT /db_xref="SPTREMBL:Q82664" FT /product="RNA-directed RNA polymerase" FT /protein_id="AAC55352.1" FT /translation="MSDVFNSPQARTKISAAFGIKPTAGQDVEELLIPKVWVPPEDPLA FT SPSRLAKFLRENGYKVLQPRSLPENEEYETDQILPDLAWMRQIEGAVLKPTLSLPIGDQ FT EYFPKYYPTHRPSKEKPNAYPPDIALLKQMIYLFLQVPEANEGLKDEVTLLTQNIRDKA FT YGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPGSPPGEDDKPW FT VPLTRVPSRMLVLTGDVDGDFEVEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQF FT LRELSTLQKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFPKAERYDKSTWLTKTRNIWSA FT PSPTHLMISMITWPVMSNSPNNVLNIEGCPSLYKFNPFRGGLNRIVEWILAPEEPKALV FT YADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWSDNGDPMFNQTWATFAM FT NIAPALVVDSTCLIMNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMKQPSPDSEEF FT KSIEDKLGINFKIERSIDDIRGKLRQLVPLAQPGYLSGGVEPEQSSPTVELDLLGWSAT FT YSKDLGIYVPVLDKERLFCSAAYTKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYP FT LLNKACKNNASAARRHLEAKGFPLDEFLAEWAELSEFGEAFEGFNIKLTVTSESLAELN FT KPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATARSRLQDAVKAKAE FT AEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETSDALEAVQSTSVYTP FT KYPEVKNPQTASNPVVGLHLPAKRATGVQAALLGAGTSRPMGMEAPTRSKNAAKMAKRG FT QRRKESRQ" FT repeat_region 228. .234 FT 3'UTR 2752. .2820 FT repeat_region 2813. .2820 XX SQ Sequence 2820 BP; 801 A; 776 C; 720 G; 523 T; 0 other; U30819 Length: 2820 September 20, 2002 15:01 Type: N Check: 5229 .. 1 ggatgcgatg ggtctgaacc tctgggagtc acgaattaac gtggctacta 51 ggggcgatgc ccgccgctag ctgccacgtt agtcgtgcct cttcttgatg 101 attctgccac catgagtgac gtttttaata gtccacaggc gcgaacgaag 151 atctcagccg cgttcggcat aaagcctact gctggacaag acgtggaaga 201 actcttgatc cccaaagtct gggtgccacc cgaggatccg cttgccagcc 251 ccagtcgact ggcaaagttc ctcagagaga acggctataa ggttttgcag 301 ccgcggtctc tgcccgagaa tgaggagtat gagactgacc aaatactccc 351 agacctagca tggatgcggc agatagaggg ggctgtttta aagcctaccc 401 tatctctccc cattggagac caggagtact tcccaaagta ctacccaaca 451 caccgcccta gcaaggagaa gcccaatgcg tacccaccag acattgcatt 501 actcaagcag atgatatacc tgtttctcca ggttccagaa gccaacgagg 551 gcttaaagga tgaggttacc ctcctgaccc aaaatataag agacaaggcc 601 tatggaagtg ggacctacat gggacaagca actcgacttg tggccatgaa 651 ggaggttgcc actgggagaa acccaaacaa agatcctcta aaacttgggt 701 acacttttga gagcatcgcg cagctgcttg acatcactct accaggtagc 751 ccacccggtg aggatgacaa gccctgggtg ccactcacaa gagtgccgtc 801 aaggatgtta gtgctgacgg gagacgtaga tggggacttt gaggttgaag 851 actaccttcc caaaatcaac ctcaagtcat caagtggact gccatatgta 901 ggtcgcacca agggagagac aattggtgag atgatagcta tctcaaacca 951 gtttctcaga gagctatcaa cactgcagaa gcaaggtgca gggacaaaag 1001 ggtcaaacaa gaagaagcta ctcagcatgc taagtgacta ttggtactta 1051 tcatgcgggc ttttgtttcc aaaggctgaa cggtatgaca aaagcacatg 1101 gcttaccaag acccggaaca tatggtcagc tccatcccca acacacctca 1151 tgatctccat gatcacctgg cccgtgatgt ccaacagccc aaacaacgtg 1201 ttgaacattg aagggtgtcc atcactctac aaattcaacc cgttcagagg 1251 agggttgaac aggattgttg agtggatact ggctccggaa gaacccaaag 1301 ctcttgtata tgcagacaac atatacattg tccactcaaa cacgtggtac 1351 tcaattgacc tagagaaggg cgaggcaaac tgcacccgcc aacacatgca 1401 agccgcaatg tactacatcc tcaccagagg gtggtcagac aacggcgacc 1451 caatgttcaa ccagacatgg gccaccttcg ccatgaacat tgccccagct 1501 ctagtagtcg actctacgtg cctgataatg aacctgcaaa tcaagaccta 1551 tggtcaaggc agcgggaatg cagccacgtt catcaacaac cacctattga 1601 gcacgctagt gcttgaccag tggaacttga tgaaacagcc cagtccagac 1651 agcgaggagt tcaaatcaat tgaggacaaa ctaggcatca acttcaagat 1701 tgagaggtcc attgatgaca tcaggggcaa gctgagacag cttgtccccc 1751 ttgcacaacc agggtacctg agtggggggg tcgaaccaga acaatccagc 1801 ccaactgttg agcttgacct actagggtgg tcggccacat acagcaaaga 1851 tctcgggatc tatgtgcctg tgcttgacaa ggaacgccta ttttgttccg 1901 ctgcgtatac caaaggagta gagaacaaga gtctcaagtc caaagtcggg 1951 atcgagcagg catataaggt agtcaggtat gaggcgttga ggttggtagg 2001 tggttggaac tacccactcc tgaataaagc ctgcaagaac aacgcaagcg 2051 cggctcggcg gcatctggag gccaaggggt tcccactcga cgagttccta 2101 gccgagtggg ccgagctgtc agaatttggc gaagccttcg agggcttcaa 2151 cataaagctg actgtaacat cagagagcct cgccgaactg aacaagccag 2201 taccccccaa gcccccaaat gtcaacagac cagtcaacac cgggggactc 2251 aaggcagtca gcaacgccct caaaaccggt cgatacagga acgaagccgg 2301 actgagtggt ctcgtccttc tagccacagc taggagccgc ctgcaagacg 2351 cagtaaaggc caaggcagaa gccgagaaac tccacaagtc caagccagac 2401 gaccccgatg cagactggtt cgaaagatca gaaactctgt cagaccttct 2451 ggagaaagcc gacatcgcca gcaaggtcgc ccactcagca ctcgtggaaa 2501 caagcgacgc tcttgaagca gttcagtcaa cctctgtgta caccccaaag 2551 tacccggagg tcaagaaccc acagaccgcc tccaaccccg ttgttgggct 2601 ccacctgccc gccaagagag ccaccggtgt ccaggccgct cttctcggag 2651 cagggacgag cagaccaatg gggatggagg ccccaacacg gtccaagaac 2701 gccgcgaaaa tggccaaaag aggccaacgc cgaaaagaga gccgccaata 2751 gccatgatgg gaatcactca agaagaggac accaacccca gaccccttat 2801 ccccggcctt cgcctgcggt