Sequence of DPV Infectious bursal disease virus
Infectious bursal disease virus RNA-directed RNA polymerase gene, complete cds.
ACC No: U30819
Dated: 2000-03-04 | Length: 2820 | CRC: -176141456
!!NA_SEQUENCE 1.0
ID IBU30819 standard; RNA; VRL; 2820 BP.
XX
AC U30819;
XX
SV U30819.1
XX
DT 31-JUL-1996 (Rel. 48, Created)
DT 04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE Infectious bursal disease virus RNA-directed RNA polymerase gene, complete
DE cds.
XX
KW .
XX
OS Infectious bursal disease virus (Gumboro virus)
OC Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus.
XX
RN [1]
RA Dybing J.K.;
RT "Sequence analysis of infectious bursal disease virus of serotype 2 and
RT expression of the vp5 cdna";
RL Thesis (1992), Pathology & Microbiology, Atlantic Veterinary College, UPEI
XX
RN [2]
RP 1-2820
RX MEDLINE; 96305317.
RA Kibenge F.S., Nagarajan M.M., Qian B.;
RT "Determination of the 5' and 3' terminal noncoding sequences of the
RT bi-segmented genome of the avibirnavirus infectious bursal disease virus";
RL Arch. Virol. 141(6):1133-1141(1996).
XX
RN [3]
RP 1-2820
RA Kibenge F.S.;
RT ;
RL Submitted (03-JUL-1995) to the EMBL/GenBank/DDBJ databases.
RL Frederick S. Kibenge, Atlantic Veterinary College, UPEI, 550 University
RL Avenue, Charlottetown, P.E.I. C1A 4P3, Canada
XX
DR SPTREMBL; Q82664; Q82664.
XX
FH Key Location/Qualifiers
FH
FT source 1. .2820
FT /db_xref="taxon:10995"
FT /organism="Infectious bursal disease virus"
FT /specific_host="Gallus domesticus"
FT /strain="OH"
FT /cell_type="B-cell precursor"
FT /cell_line="Vero"
FT 5'UTR 1. .111
FT stem_loop 25. .89
FT RBS 80. .93
FT CDS 112. .2751
FT /codon_start=1
FT /db_xref="SPTREMBL:Q82664"
FT /product="RNA-directed RNA polymerase"
FT /protein_id="AAC55352.1"
FT /translation="MSDVFNSPQARTKISAAFGIKPTAGQDVEELLIPKVWVPPEDPLA
FT SPSRLAKFLRENGYKVLQPRSLPENEEYETDQILPDLAWMRQIEGAVLKPTLSLPIGDQ
FT EYFPKYYPTHRPSKEKPNAYPPDIALLKQMIYLFLQVPEANEGLKDEVTLLTQNIRDKA
FT YGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPGSPPGEDDKPW
FT VPLTRVPSRMLVLTGDVDGDFEVEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQF
FT LRELSTLQKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFPKAERYDKSTWLTKTRNIWSA
FT PSPTHLMISMITWPVMSNSPNNVLNIEGCPSLYKFNPFRGGLNRIVEWILAPEEPKALV
FT YADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWSDNGDPMFNQTWATFAM
FT NIAPALVVDSTCLIMNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMKQPSPDSEEF
FT KSIEDKLGINFKIERSIDDIRGKLRQLVPLAQPGYLSGGVEPEQSSPTVELDLLGWSAT
FT YSKDLGIYVPVLDKERLFCSAAYTKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYP
FT LLNKACKNNASAARRHLEAKGFPLDEFLAEWAELSEFGEAFEGFNIKLTVTSESLAELN
FT KPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATARSRLQDAVKAKAE
FT AEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETSDALEAVQSTSVYTP
FT KYPEVKNPQTASNPVVGLHLPAKRATGVQAALLGAGTSRPMGMEAPTRSKNAAKMAKRG
FT QRRKESRQ"
FT repeat_region 228. .234
FT 3'UTR 2752. .2820
FT repeat_region 2813. .2820
XX
SQ Sequence 2820 BP; 801 A; 776 C; 720 G; 523 T; 0 other;
U30819 Length: 2820 September 20, 2002 15:01 Type: N Check: 5229 ..
1 ggatgcgatg ggtctgaacc tctgggagtc acgaattaac gtggctacta
51 ggggcgatgc ccgccgctag ctgccacgtt agtcgtgcct cttcttgatg
101 attctgccac catgagtgac gtttttaata gtccacaggc gcgaacgaag
151 atctcagccg cgttcggcat aaagcctact gctggacaag acgtggaaga
201 actcttgatc cccaaagtct gggtgccacc cgaggatccg cttgccagcc
251 ccagtcgact ggcaaagttc ctcagagaga acggctataa ggttttgcag
301 ccgcggtctc tgcccgagaa tgaggagtat gagactgacc aaatactccc
351 agacctagca tggatgcggc agatagaggg ggctgtttta aagcctaccc
401 tatctctccc cattggagac caggagtact tcccaaagta ctacccaaca
451 caccgcccta gcaaggagaa gcccaatgcg tacccaccag acattgcatt
501 actcaagcag atgatatacc tgtttctcca ggttccagaa gccaacgagg
551 gcttaaagga tgaggttacc ctcctgaccc aaaatataag agacaaggcc
601 tatggaagtg ggacctacat gggacaagca actcgacttg tggccatgaa
651 ggaggttgcc actgggagaa acccaaacaa agatcctcta aaacttgggt
701 acacttttga gagcatcgcg cagctgcttg acatcactct accaggtagc
751 ccacccggtg aggatgacaa gccctgggtg ccactcacaa gagtgccgtc
801 aaggatgtta gtgctgacgg gagacgtaga tggggacttt gaggttgaag
851 actaccttcc caaaatcaac ctcaagtcat caagtggact gccatatgta
901 ggtcgcacca agggagagac aattggtgag atgatagcta tctcaaacca
951 gtttctcaga gagctatcaa cactgcagaa gcaaggtgca gggacaaaag
1001 ggtcaaacaa gaagaagcta ctcagcatgc taagtgacta ttggtactta
1051 tcatgcgggc ttttgtttcc aaaggctgaa cggtatgaca aaagcacatg
1101 gcttaccaag acccggaaca tatggtcagc tccatcccca acacacctca
1151 tgatctccat gatcacctgg cccgtgatgt ccaacagccc aaacaacgtg
1201 ttgaacattg aagggtgtcc atcactctac aaattcaacc cgttcagagg
1251 agggttgaac aggattgttg agtggatact ggctccggaa gaacccaaag
1301 ctcttgtata tgcagacaac atatacattg tccactcaaa cacgtggtac
1351 tcaattgacc tagagaaggg cgaggcaaac tgcacccgcc aacacatgca
1401 agccgcaatg tactacatcc tcaccagagg gtggtcagac aacggcgacc
1451 caatgttcaa ccagacatgg gccaccttcg ccatgaacat tgccccagct
1501 ctagtagtcg actctacgtg cctgataatg aacctgcaaa tcaagaccta
1551 tggtcaaggc agcgggaatg cagccacgtt catcaacaac cacctattga
1601 gcacgctagt gcttgaccag tggaacttga tgaaacagcc cagtccagac
1651 agcgaggagt tcaaatcaat tgaggacaaa ctaggcatca acttcaagat
1701 tgagaggtcc attgatgaca tcaggggcaa gctgagacag cttgtccccc
1751 ttgcacaacc agggtacctg agtggggggg tcgaaccaga acaatccagc
1801 ccaactgttg agcttgacct actagggtgg tcggccacat acagcaaaga
1851 tctcgggatc tatgtgcctg tgcttgacaa ggaacgccta ttttgttccg
1901 ctgcgtatac caaaggagta gagaacaaga gtctcaagtc caaagtcggg
1951 atcgagcagg catataaggt agtcaggtat gaggcgttga ggttggtagg
2001 tggttggaac tacccactcc tgaataaagc ctgcaagaac aacgcaagcg
2051 cggctcggcg gcatctggag gccaaggggt tcccactcga cgagttccta
2101 gccgagtggg ccgagctgtc agaatttggc gaagccttcg agggcttcaa
2151 cataaagctg actgtaacat cagagagcct cgccgaactg aacaagccag
2201 taccccccaa gcccccaaat gtcaacagac cagtcaacac cgggggactc
2251 aaggcagtca gcaacgccct caaaaccggt cgatacagga acgaagccgg
2301 actgagtggt ctcgtccttc tagccacagc taggagccgc ctgcaagacg
2351 cagtaaaggc caaggcagaa gccgagaaac tccacaagtc caagccagac
2401 gaccccgatg cagactggtt cgaaagatca gaaactctgt cagaccttct
2451 ggagaaagcc gacatcgcca gcaaggtcgc ccactcagca ctcgtggaaa
2501 caagcgacgc tcttgaagca gttcagtcaa cctctgtgta caccccaaag
2551 tacccggagg tcaagaaccc acagaccgcc tccaaccccg ttgttgggct
2601 ccacctgccc gccaagagag ccaccggtgt ccaggccgct cttctcggag
2651 cagggacgag cagaccaatg gggatggagg ccccaacacg gtccaagaac
2701 gccgcgaaaa tggccaaaag aggccaacgc cgaaaagaga gccgccaata
2751 gccatgatgg gaatcactca agaagaggac accaacccca gaccccttat
2801 ccccggcctt cgcctgcggt