Sequence of DPV Infectious bursal disease virus

Infectious bursal disease virus RNA-directed RNA polymerase gene, complete cds.

ACC No: U30819

Dated: 2000-03-04 | Length: 2820 | CRC: -176141456

                !!NA_SEQUENCE 1.0
ID   IBU30819   standard; RNA; VRL; 2820 BP.
XX
AC   U30819;
XX
SV   U30819.1
XX
DT   31-JUL-1996 (Rel. 48, Created)
DT   04-MAR-2000 (Rel. 63, Last updated, Version 4)
XX
DE   Infectious bursal disease virus RNA-directed RNA polymerase gene, complete
DE   cds.
XX
KW   .
XX
OS   Infectious bursal disease virus (Gumboro virus)
OC   Viruses; dsRNA viruses; Birnaviridae; Avibirnavirus.
XX
RN   [1]
RA   Dybing J.K.;
RT   "Sequence analysis of infectious bursal disease virus of serotype 2 and
RT   expression of the vp5 cdna";
RL   Thesis (1992), Pathology & Microbiology, Atlantic Veterinary College, UPEI
XX
RN   [2]
RP   1-2820
RX   MEDLINE; 96305317.
RA   Kibenge F.S., Nagarajan M.M., Qian B.;
RT   "Determination of the 5' and 3' terminal noncoding sequences of the
RT   bi-segmented genome of the avibirnavirus infectious bursal disease virus";
RL   Arch. Virol. 141(6):1133-1141(1996).
XX
RN   [3]
RP   1-2820
RA   Kibenge F.S.;
RT   ;
RL   Submitted (03-JUL-1995) to the EMBL/GenBank/DDBJ databases.
RL   Frederick S. Kibenge, Atlantic Veterinary College, UPEI, 550 University
RL   Avenue, Charlottetown, P.E.I. C1A 4P3, Canada
XX
DR   SPTREMBL; Q82664; Q82664.
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .2820
FT                   /db_xref="taxon:10995"
FT                   /organism="Infectious bursal disease virus"
FT                   /specific_host="Gallus domesticus"
FT                   /strain="OH"
FT                   /cell_type="B-cell precursor"
FT                   /cell_line="Vero"
FT   5'UTR           1. .111
FT   stem_loop       25. .89
FT   RBS             80. .93
FT   CDS             112. .2751
FT                   /codon_start=1
FT                   /db_xref="SPTREMBL:Q82664"
FT                   /product="RNA-directed RNA polymerase"
FT                   /protein_id="AAC55352.1"
FT                   /translation="MSDVFNSPQARTKISAAFGIKPTAGQDVEELLIPKVWVPPEDPLA
FT                   SPSRLAKFLRENGYKVLQPRSLPENEEYETDQILPDLAWMRQIEGAVLKPTLSLPIGDQ
FT                   EYFPKYYPTHRPSKEKPNAYPPDIALLKQMIYLFLQVPEANEGLKDEVTLLTQNIRDKA
FT                   YGSGTYMGQATRLVAMKEVATGRNPNKDPLKLGYTFESIAQLLDITLPGSPPGEDDKPW
FT                   VPLTRVPSRMLVLTGDVDGDFEVEDYLPKINLKSSSGLPYVGRTKGETIGEMIAISNQF
FT                   LRELSTLQKQGAGTKGSNKKKLLSMLSDYWYLSCGLLFPKAERYDKSTWLTKTRNIWSA
FT                   PSPTHLMISMITWPVMSNSPNNVLNIEGCPSLYKFNPFRGGLNRIVEWILAPEEPKALV
FT                   YADNIYIVHSNTWYSIDLEKGEANCTRQHMQAAMYYILTRGWSDNGDPMFNQTWATFAM
FT                   NIAPALVVDSTCLIMNLQIKTYGQGSGNAATFINNHLLSTLVLDQWNLMKQPSPDSEEF
FT                   KSIEDKLGINFKIERSIDDIRGKLRQLVPLAQPGYLSGGVEPEQSSPTVELDLLGWSAT
FT                   YSKDLGIYVPVLDKERLFCSAAYTKGVENKSLKSKVGIEQAYKVVRYEALRLVGGWNYP
FT                   LLNKACKNNASAARRHLEAKGFPLDEFLAEWAELSEFGEAFEGFNIKLTVTSESLAELN
FT                   KPVPPKPPNVNRPVNTGGLKAVSNALKTGRYRNEAGLSGLVLLATARSRLQDAVKAKAE
FT                   AEKLHKSKPDDPDADWFERSETLSDLLEKADIASKVAHSALVETSDALEAVQSTSVYTP
FT                   KYPEVKNPQTASNPVVGLHLPAKRATGVQAALLGAGTSRPMGMEAPTRSKNAAKMAKRG
FT                   QRRKESRQ"
FT   repeat_region   228. .234
FT   3'UTR           2752. .2820
FT   repeat_region   2813. .2820
XX
SQ   Sequence 2820 BP; 801 A; 776 C; 720 G; 523 T; 0 other;

U30819  Length: 2820  September 20, 2002 15:01  Type: N  Check: 5229  ..

       1  ggatgcgatg ggtctgaacc tctgggagtc acgaattaac gtggctacta
      51  ggggcgatgc ccgccgctag ctgccacgtt agtcgtgcct cttcttgatg
     101  attctgccac catgagtgac gtttttaata gtccacaggc gcgaacgaag
     151  atctcagccg cgttcggcat aaagcctact gctggacaag acgtggaaga
     201  actcttgatc cccaaagtct gggtgccacc cgaggatccg cttgccagcc
     251  ccagtcgact ggcaaagttc ctcagagaga acggctataa ggttttgcag
     301  ccgcggtctc tgcccgagaa tgaggagtat gagactgacc aaatactccc
     351  agacctagca tggatgcggc agatagaggg ggctgtttta aagcctaccc
     401  tatctctccc cattggagac caggagtact tcccaaagta ctacccaaca
     451  caccgcccta gcaaggagaa gcccaatgcg tacccaccag acattgcatt
     501  actcaagcag atgatatacc tgtttctcca ggttccagaa gccaacgagg
     551  gcttaaagga tgaggttacc ctcctgaccc aaaatataag agacaaggcc
     601  tatggaagtg ggacctacat gggacaagca actcgacttg tggccatgaa
     651  ggaggttgcc actgggagaa acccaaacaa agatcctcta aaacttgggt
     701  acacttttga gagcatcgcg cagctgcttg acatcactct accaggtagc
     751  ccacccggtg aggatgacaa gccctgggtg ccactcacaa gagtgccgtc
     801  aaggatgtta gtgctgacgg gagacgtaga tggggacttt gaggttgaag
     851  actaccttcc caaaatcaac ctcaagtcat caagtggact gccatatgta
     901  ggtcgcacca agggagagac aattggtgag atgatagcta tctcaaacca
     951  gtttctcaga gagctatcaa cactgcagaa gcaaggtgca gggacaaaag
    1001  ggtcaaacaa gaagaagcta ctcagcatgc taagtgacta ttggtactta
    1051  tcatgcgggc ttttgtttcc aaaggctgaa cggtatgaca aaagcacatg
    1101  gcttaccaag acccggaaca tatggtcagc tccatcccca acacacctca
    1151  tgatctccat gatcacctgg cccgtgatgt ccaacagccc aaacaacgtg
    1201  ttgaacattg aagggtgtcc atcactctac aaattcaacc cgttcagagg
    1251  agggttgaac aggattgttg agtggatact ggctccggaa gaacccaaag
    1301  ctcttgtata tgcagacaac atatacattg tccactcaaa cacgtggtac
    1351  tcaattgacc tagagaaggg cgaggcaaac tgcacccgcc aacacatgca
    1401  agccgcaatg tactacatcc tcaccagagg gtggtcagac aacggcgacc
    1451  caatgttcaa ccagacatgg gccaccttcg ccatgaacat tgccccagct
    1501  ctagtagtcg actctacgtg cctgataatg aacctgcaaa tcaagaccta
    1551  tggtcaaggc agcgggaatg cagccacgtt catcaacaac cacctattga
    1601  gcacgctagt gcttgaccag tggaacttga tgaaacagcc cagtccagac
    1651  agcgaggagt tcaaatcaat tgaggacaaa ctaggcatca acttcaagat
    1701  tgagaggtcc attgatgaca tcaggggcaa gctgagacag cttgtccccc
    1751  ttgcacaacc agggtacctg agtggggggg tcgaaccaga acaatccagc
    1801  ccaactgttg agcttgacct actagggtgg tcggccacat acagcaaaga
    1851  tctcgggatc tatgtgcctg tgcttgacaa ggaacgccta ttttgttccg
    1901  ctgcgtatac caaaggagta gagaacaaga gtctcaagtc caaagtcggg
    1951  atcgagcagg catataaggt agtcaggtat gaggcgttga ggttggtagg
    2001  tggttggaac tacccactcc tgaataaagc ctgcaagaac aacgcaagcg
    2051  cggctcggcg gcatctggag gccaaggggt tcccactcga cgagttccta
    2101  gccgagtggg ccgagctgtc agaatttggc gaagccttcg agggcttcaa
    2151  cataaagctg actgtaacat cagagagcct cgccgaactg aacaagccag
    2201  taccccccaa gcccccaaat gtcaacagac cagtcaacac cgggggactc
    2251  aaggcagtca gcaacgccct caaaaccggt cgatacagga acgaagccgg
    2301  actgagtggt ctcgtccttc tagccacagc taggagccgc ctgcaagacg
    2351  cagtaaaggc caaggcagaa gccgagaaac tccacaagtc caagccagac
    2401  gaccccgatg cagactggtt cgaaagatca gaaactctgt cagaccttct
    2451  ggagaaagcc gacatcgcca gcaaggtcgc ccactcagca ctcgtggaaa
    2501  caagcgacgc tcttgaagca gttcagtcaa cctctgtgta caccccaaag
    2551  tacccggagg tcaagaaccc acagaccgcc tccaaccccg ttgttgggct
    2601  ccacctgccc gccaagagag ccaccggtgt ccaggccgct cttctcggag
    2651  cagggacgag cagaccaatg gggatggagg ccccaacacg gtccaagaac
    2701  gccgcgaaaa tggccaaaag aggccaacgc cgaaaagaga gccgccaata
    2751  gccatgatgg gaatcactca agaagaggac accaacccca gaccccttat
    2801  ccccggcctt cgcctgcggt