Sequence of DPV Panicum mosaic virus
Panicum mosaic virus (PMV) Kansas strain infectious clone, complete sequence.
ACC No: U55002
Dated: 1998-12-23 | Length: 4326 | CRC: 834182997
!!NA_SEQUENCE 1.0 ID PMU55002 standard; RNA; VRL; 4326 BP. XX AC U55002; XX SV U55002.1 XX DT 20-JAN-1997 (Rel. 50, Created) DT 23-DEC-1998 (Rel. 58, Last updated, Version 6) XX DE Panicum mosaic virus (PMV) Kansas strain infectious clone, complete DE sequence. XX KW . XX OS Panicum mosaic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae. XX RN [1] RP 1-4326 RX MEDLINE; 98122999. RA Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.-B.G.; RT "Nucleotide sequence and infectivity of a full-length cDNA clone of panicum RT mosaic virus"; RL Virology 241(1):141-155(1998). XX RN [2] RP 1-4326 RA Scholthof K.-B.G., Turina M.; RT ; RL Submitted (12-APR-1996) to the EMBL/GenBank/DDBJ databases. RL K.-B. G. Scholthof, Plant Pathology, Texas A&M University, 120 Peterson RL Building, College Station, TX 77843-2132, USA XX DR SPTREMBL; P89034; P89034. DR SPTREMBL; P89035; P89035. DR SPTREMBL; P89036; P89036. DR SPTREMBL; P89037; P89037. DR SPTREMBL; P90334; P90334. DR SPTREMBL; P90335; P90335. XX FH Key Location/Qualifiers FH FT source 1. .4326 FT /db_xref="taxon:40279" FT /note="PMV is a member of the provisional group FT 'Panicovirus' within the family Tombusviridae; Virus is FT maintained by mechanical transmission to Pennisetum FT glaucum" FT /organism="Panicum mosaic virus" FT /strain="Kansas" FT CDS 29. .1306 FT /codon_start=1 FT /db_xref="SPTREMBL:P90334" FT /note="p48; putative" FT /product="48 kDa replicase protein" FT /protein_id="AAC97552.1" FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP FT LVGANWTAWARSIFISDPETGLRFAK" FT CDS 29. .3007 FT /codon_start=1 FT /db_xref="SPTREMBL:P89034" FT /note="p112 is a putative readthrough protein of p48 ORF" FT /transl_except=(pos:1304. .1306,aa:OTHER) FT /product="112 kDa replicase protein" FT /protein_id="AAC97551.1" FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP FT LVGANWTAWARSIFISDPETGLRFAKXGCIEKWQGVQCKRTRVRHPRLRCHFKDRDPKV FT RSIYRIAGLGDQYEFGLHNNSAANLERGLAERVYMVKNYKTDFVASLDPAFCPAPEPVR FT GIFKRLDKYKKEIVRRVGRKSPITDEMFLSYYDGPQLTTYSKAVISLSERPVAVQDSYL FT KTFIKAEKLNLTLKTDPCPRVIQPRHPRYNVELGKYLKHIEHPIYKAIDRIWGGKTIFK FT GMNVEAMGAEIHKKMCKYSNPCAIGFDASRFDQHVSVEALRFEHSIYKSIHGYPELLSL FT LLKWQIHNQGTAHTNDGFFKYLVDGKRMSGDMNTSLGNCILASLIVKDLVDSLGVDAQL FT VNNGDDNVLICSVDDEEVVVKALYDHWMKYGFEVVAEQPVYITEQIEFCQMKPVFDGTQ FT YVLVRNPTVTMSKDACSITPFYTANSARKWCRAVGEAGLSLTGGMPIKQAYYQCMIRNG FT INKGNIHKSKEFRYGLSYVLHHGKSDRKARPISAATRYSFYLAFGYTPDEQTALEGYYD FT SLELEWTESRLGIPARTPECLLLRLLPKIPLQPKSPTKPVQRTASKPDLPDSQWQQALA FT APL" FT CDS 2875. .3096 FT /codon_start=1 FT /db_xref="SPTREMBL:P90335" FT /note="8 kDa putative ORF" FT /product="p8" FT /protein_id="AAC97553.1" FT /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTALS FT QRDAQEDRFSLGIVQTADKIENTFNFNF" FT CDS join(2875. .3093,3096. .3275) FT /codon_start=1 FT /db_xref="SPTREMBL:P89035" FT /note="putative 14.6 kDa protein; shares amino terminus FT with p8 (putative 8 kDa protein); putative -1 frameshift" FT /product="p8-FS" FT /protein_id="AAC97554.1" FT /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTALS FT QRDAQEDRFSLGIVQTADKIENTFNFNFVATGKCYCPEDPRVGPLLVLCLLLLLILFSR FT SWNVAPVVVPSYHTVYHHEKYQNIEIQK" FT CDS 3272. .4000 FT /codon_start=1 FT /db_xref="SPTREMBL:P89036" FT /product="26 kDa capsid protein" FT /protein_id="AAC97555.1" FT /translation="MNRNGATPTRGRGKRAIPNPPRRRARGKSVERGSTPLQYVTTLGP FT SRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDKPIYSGSAPHLR FT TIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDLMDSESLVLVP FT SLSGKTYRPKIETRGNPPELRNIDATAFSALSDEDKGDYSVGRLVVGSSKQAVVIQLGL FT LRMRYSAEMRGATSISGVSA" FT CDS 3282. .3680 FT /codon_start=1 FT /db_xref="SPTREMBL:P89037" FT /note="putative; Gene nested within 26 kDa capsid protein FT ORF" FT /product="15 kDa protein" FT /protein_id="AAC97556.1" FT /translation="MELPLPEDVASVLYLTPLAAVREVNLWNGAPPPYSMLQLWARVDH FT AWAKDRVGRSYPTRKSYFKSTRLLPRTLYRQYQSYRDCQCLQETSPFTREVHHTCVQLD FT PLSPSTDGEHSPSSGSPAVLRQHREIWF" XX SQ Sequence 4326 BP; 1216 A; 1113 C; 1051 G; 946 T; 0 other; U55002 Length: 4326 December 21, 2001 15:59 Type: N Check: 5411 .. 1 gggtattggc tgcaacccat acctgaagat ggagtcgctc atacagcaca 51 ttctctctgc tacatcttcg ctttccatgc catcagtgga cagtgacaaa 101 ctgcaactac tacttacacg cttcccacag gctacactct catggctgag 151 tggaatagac ggcctaagcg tgcatcaatt caaggtagtg gctacccacg 201 taatcaagga aagctattcc catctctcac cttccgttgc agtgttgctg 251 gcgaagccca gtgactacta caagctggtg gtccacggac tcacccaaaa 301 gcaatggaac gagtttgacg ataaagtcac agacgctccg cggaccgcta 351 tatcatggtt atacaaccaa attttggtag ttggacagcc atggatgaag 401 agtctgaacg agggattaaa ggaatacctg ccaggttggc ttcacacctg 451 tctaagaatg ctagccaatc tgtggttcgg ggctgaaaga gttctacatg 501 gcatttcaca cgccgtcagt gacatcacta catatcaacc atggatgtca 551 tgtcggagat gtgtcgcaca tagccccaaa gagagcttgc taggcgaggc 601 aaccaccacc tccaaccccc gagagtcttc ttggttttca tggttgttgt 651 gcggaggagt ggtagcggca acggtatatg gattctacaa atgggttacc 701 atcacggaga ccattgaccg ccaggaccta gcaaaacaga ggcccactca 751 tatgcagaag tgctatgaag aagtgaaggc ccgactagag gaggaaagca 801 aagggttcat tcacgaccgg atggaagacg aactcaccaa aatcgtgcta 851 gagccagctg aaattgacaa tgacggcaaa gtgcttaaat ctgaggtggc 901 acaatacctg gttaaaaatc atggccgttt cgtccgctcc ctagtaacaa 951 tggcaaagaa cgaattcgct ggggttccaa aacccacaga ggctaaccag 1001 ttggctgtct ggagatacct ctacagggtg tgtgataaga aaggagttaa 1051 cccctcggac acacagaaaa gcatatccgc tgccttgcca tttgtattcc 1101 tgcctagcgc atacgaccag gatcaggcca tcactatgaa ctgtgatgac 1151 accaagaaag tgcttgagcg ctatgcagac acatttcgac acaccacccc 1201 actgcaaaaa ctagtgacca atccattagt tggggccaat tggactgctt 1251 gggcaagatc catttttatc tcggacccgg aaacgggtct gaggtttgcc 1301 aagtaggggt gtatcgaaaa gtggcagggg gtccagtgca agcgcactcg 1351 ggtccgacac ccccgtctca gatgccactt taaagatagg gaccccaagg 1401 tacgcagtat ttaccgtatc gctggactgg gcgatcagta tgagtttggg 1451 cttcacaaca acagtgctgc gaaccttgaa aggggcttag ccgaaagggt 1501 gtacatggtc aagaattaca agacagactt tgtagcctca cttgaccctg 1551 cgttttgccc tgccccagaa ccagtcagag gcatattcaa acgcctagac 1601 aaatacaaga aggagattgt gagacgagtc ggtaggaaga gtccaatcac 1651 tgacgagatg ttcctttctt actatgatgg tccccagttg accacttata 1701 gcaaggctgt gatttccttg tccgaacgcc ctgtggctgt ccaagactca 1751 tatcttaaaa ccttcatcaa ggcggagaaa ttaaacctca cactcaagac 1801 agacccctgt cctagggtca tacaaccacg tcaccccaga tacaatgtcg 1851 agttgggtaa gtatctcaag cacatagaac acccaatcta taaagccata 1901 gacagaatat ggggggggaa gacaatattt aaaggcatga atgtagaggc 1951 tatgggcgcc gaaatccaca agaaaatgtg caaatactcc aacccttgcg 2001 caataggatt tgacgcctcc cgtttcgatc agcacgtatc tgtagaagcg 2051 ctaagatttg agcactccat ctacaaatct attcacggat accctgaact 2101 gcttagtcta ctactcaaat ggcaaatcca caaccagggc actgcacaca 2151 ccaatgatgg atttttcaag tacttagtag acggaaagag gatgtctggt 2201 gacatgaaca ccagtctggg aaactgcatt ttggcatcgc taatagtgaa 2251 agacttggtt gacagtctag gcgttgatgc tcaactcgtc aacaatggag 2301 acgacaatgt cctaatctgc tcggtggatg atgaggaagt ggtagtcaag 2351 gcattgtacg accattggat gaagtatggg tttgaggtcg tagcagagca 2401 accagtctat atcacagagc aaatagaatt ctgccaaatg aagccagttt 2451 ttgacggaac ccagtatgtc ctcgtcagaa acccaactgt taccatgagt 2501 aaagatgcgt gcagcattac tcctttttac acagcgaaca gcgctcgcaa 2551 atggtgtaga gcagttggag aagcaggatt aagtctgaca ggtggtatgc 2601 ccatcaaaca agcgtattac cagtgcatga ttcgaaacgg cattaacaag 2651 ggtaacatcc acaagtcaaa ggagtttagg tacgggttat cttacgtgct 2701 acaccacggc aaatccgacc ggaaggcccg ccccatttca gcggcgacca 2751 gatattcatt ctaccttgca tttggctaca ctcctgacga gcaaacagcc 2801 ttggaaggtt attatgactc ccttgaattg gagtggaccg aatccaggtt 2851 gggtattcct gcaagaacgc ccgaatgtct actgttgaga ctcctgccca 2901 agataccctt gcaaccaaag agcccaacaa aaccggtgca aaggaccgcc 2951 agcaagccag atctgccaga ctctcagtgg cagcaggcgc tggccgcacc 3001 gctttaagcc aacgagacgc acaagaagac aggttcagcc taggaattgt 3051 tcaaactgct gacaagattg aaaatacttt caacttcaat ttctagtggc 3101 gaccggcaag tgctattgtc ccgaggaccc aagagttggg cccctcctag 3151 tactctgcct acttctatta ctgatcctgt tttcacggtc gtggaacgta 3201 gctccagtgg tggttccctc ataccacaca gtgtaccatc acgagaaata 3251 ccaaaacatt gagatccaga aatgaatcgc aatggagcta cccctaccag 3301 aggacgtggc aagcgtgcta tacctaaccc ccctcgccgc cgtgcgagag 3351 gtaaatctgt ggaacggggc tccacccccc tacagtatgt tacaactctg 3401 ggcccgagta gaccacgcat gggccaagga cagggttggc agaagttatc 3451 ccacgaggaa atcatacttc aagtcaactc gtctactgcc gcggacacta 3501 tacagacaat accaatcata ccgcgattgt cagtgcctgc aggagacaag 3551 cccatttact cgggaagtgc accacacctg cgtacaattg gatccgcttt 3601 cgccatccac agatggcgag cactctcctt cgagtggatc cccagctgtc 3651 ctacgacaac accgggaaat ctggttttga ggttctatcc gaactacagc 3701 acggaaacac ctaagaccct cacagacctg atggacagcg aatccctcgt 3751 gttagtccct tccctctccg ggaaaactta ccgccctaag atcgaaacac 3801 gaggaaaccc accggaattg cgcaacatag atgccaccgc tttctccgct 3851 ctcagcgacg aagataaggg tgactactcg gtgggaaggc tggttgttgg 3901 ctccagcaaa caagctgtcg tgatacagct cggactcctc cgcatgagat 3951 actcagctga aatgcgggga gcaacctcca tcagtggggt tagcgcataa 4001 acctgcccaa ggttatcaca ggctaggacc ggcctgataa aggtccgact 4051 tgatgtgcag cttcttaggt gcatctcgta tagaagcgct ctggacatga 4101 cacctttgag acagaccgta cagcagtcac acgggacgcc acaccacctt 4151 tgcagaggtg cccttgggaa accaatggtg tggggtgaca ctgattagtc 4201 gttaacggtg tactaatcca gagtagttca gtgcagggga aacccgggcc 4251 gtaagcacgt ggaactatat aacttaatct cgctgagaag attggggggg 4301 attcatgaaa tcccctcacc aggccc