Sequence of DPV Panicum mosaic virus
Panicum mosaic virus (PMV) Kansas strain infectious clone, complete sequence.
ACC No: U55002
Dated: 1998-12-23 | Length: 4326 | CRC: 834182997
!!NA_SEQUENCE 1.0
ID PMU55002 standard; RNA; VRL; 4326 BP.
XX
AC U55002;
XX
SV U55002.1
XX
DT 20-JAN-1997 (Rel. 50, Created)
DT 23-DEC-1998 (Rel. 58, Last updated, Version 6)
XX
DE Panicum mosaic virus (PMV) Kansas strain infectious clone, complete
DE sequence.
XX
KW .
XX
OS Panicum mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae.
XX
RN [1]
RP 1-4326
RX MEDLINE; 98122999.
RA Turina M., Maruoka M., Monis J., Jackson A.O., Scholthof K.-B.G.;
RT "Nucleotide sequence and infectivity of a full-length cDNA clone of panicum
RT mosaic virus";
RL Virology 241(1):141-155(1998).
XX
RN [2]
RP 1-4326
RA Scholthof K.-B.G., Turina M.;
RT ;
RL Submitted (12-APR-1996) to the EMBL/GenBank/DDBJ databases.
RL K.-B. G. Scholthof, Plant Pathology, Texas A&M University, 120 Peterson
RL Building, College Station, TX 77843-2132, USA
XX
DR SPTREMBL; P89034; P89034.
DR SPTREMBL; P89035; P89035.
DR SPTREMBL; P89036; P89036.
DR SPTREMBL; P89037; P89037.
DR SPTREMBL; P90334; P90334.
DR SPTREMBL; P90335; P90335.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4326
FT /db_xref="taxon:40279"
FT /note="PMV is a member of the provisional group
FT 'Panicovirus' within the family Tombusviridae; Virus is
FT maintained by mechanical transmission to Pennisetum
FT glaucum"
FT /organism="Panicum mosaic virus"
FT /strain="Kansas"
FT CDS 29. .1306
FT /codon_start=1
FT /db_xref="SPTREMBL:P90334"
FT /note="p48; putative"
FT /product="48 kDa replicase protein"
FT /protein_id="AAC97552.1"
FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG
FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP
FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV
FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW
FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN
FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV
FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP
FT LVGANWTAWARSIFISDPETGLRFAK"
FT CDS 29. .3007
FT /codon_start=1
FT /db_xref="SPTREMBL:P89034"
FT /note="p112 is a putative readthrough protein of p48 ORF"
FT /transl_except=(pos:1304. .1306,aa:OTHER)
FT /product="112 kDa replicase protein"
FT /protein_id="AAC97551.1"
FT /translation="MESLIQHILSATSSLSMPSVDSDKLQLLLTRFPQATLSWLSGIDG
FT LSVHQFKVVATHVIKESYSHLSPSVAVLLAKPSDYYKLVVHGLTQKQWNEFDDKVTDAP
FT RTAISWLYNQILVVGQPWMKSLNEGLKEYLPGWLHTCLRMLANLWFGAERVLHGISHAV
FT SDITTYQPWMSCRRCVAHSPKESLLGEATTTSNPRESSWFSWLLCGGVVAATVYGFYKW
FT VTITETIDRQDLAKQRPTHMQKCYEEVKARLEEESKGFIHDRMEDELTKIVLEPAEIDN
FT DGKVLKSEVAQYLVKNHGRFVRSLVTMAKNEFAGVPKPTEANQLAVWRYLYRVCDKKGV
FT NPSDTQKSISAALPFVFLPSAYDQDQAITMNCDDTKKVLERYADTFRHTTPLQKLVTNP
FT LVGANWTAWARSIFISDPETGLRFAKXGCIEKWQGVQCKRTRVRHPRLRCHFKDRDPKV
FT RSIYRIAGLGDQYEFGLHNNSAANLERGLAERVYMVKNYKTDFVASLDPAFCPAPEPVR
FT GIFKRLDKYKKEIVRRVGRKSPITDEMFLSYYDGPQLTTYSKAVISLSERPVAVQDSYL
FT KTFIKAEKLNLTLKTDPCPRVIQPRHPRYNVELGKYLKHIEHPIYKAIDRIWGGKTIFK
FT GMNVEAMGAEIHKKMCKYSNPCAIGFDASRFDQHVSVEALRFEHSIYKSIHGYPELLSL
FT LLKWQIHNQGTAHTNDGFFKYLVDGKRMSGDMNTSLGNCILASLIVKDLVDSLGVDAQL
FT VNNGDDNVLICSVDDEEVVVKALYDHWMKYGFEVVAEQPVYITEQIEFCQMKPVFDGTQ
FT YVLVRNPTVTMSKDACSITPFYTANSARKWCRAVGEAGLSLTGGMPIKQAYYQCMIRNG
FT INKGNIHKSKEFRYGLSYVLHHGKSDRKARPISAATRYSFYLAFGYTPDEQTALEGYYD
FT SLELEWTESRLGIPARTPECLLLRLLPKIPLQPKSPTKPVQRTASKPDLPDSQWQQALA
FT APL"
FT CDS 2875. .3096
FT /codon_start=1
FT /db_xref="SPTREMBL:P90335"
FT /note="8 kDa putative ORF"
FT /product="p8"
FT /protein_id="AAC97553.1"
FT /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTALS
FT QRDAQEDRFSLGIVQTADKIENTFNFNF"
FT CDS join(2875. .3093,3096. .3275)
FT /codon_start=1
FT /db_xref="SPTREMBL:P89035"
FT /note="putative 14.6 kDa protein; shares amino terminus
FT with p8 (putative 8 kDa protein); putative -1 frameshift"
FT /product="p8-FS"
FT /protein_id="AAC97554.1"
FT /translation="MSTVETPAQDTLATKEPNKTGAKDRQQARSARLSVAAGAGRTALS
FT QRDAQEDRFSLGIVQTADKIENTFNFNFVATGKCYCPEDPRVGPLLVLCLLLLLILFSR
FT SWNVAPVVVPSYHTVYHHEKYQNIEIQK"
FT CDS 3272. .4000
FT /codon_start=1
FT /db_xref="SPTREMBL:P89036"
FT /product="26 kDa capsid protein"
FT /protein_id="AAC97555.1"
FT /translation="MNRNGATPTRGRGKRAIPNPPRRRARGKSVERGSTPLQYVTTLGP
FT SRPRMGQGQGWQKLSHEEIILQVNSSTAADTIQTIPIIPRLSVPAGDKPIYSGSAPHLR
FT TIGSAFAIHRWRALSFEWIPSCPTTTPGNLVLRFYPNYSTETPKTLTDLMDSESLVLVP
FT SLSGKTYRPKIETRGNPPELRNIDATAFSALSDEDKGDYSVGRLVVGSSKQAVVIQLGL
FT LRMRYSAEMRGATSISGVSA"
FT CDS 3282. .3680
FT /codon_start=1
FT /db_xref="SPTREMBL:P89037"
FT /note="putative; Gene nested within 26 kDa capsid protein
FT ORF"
FT /product="15 kDa protein"
FT /protein_id="AAC97556.1"
FT /translation="MELPLPEDVASVLYLTPLAAVREVNLWNGAPPPYSMLQLWARVDH
FT AWAKDRVGRSYPTRKSYFKSTRLLPRTLYRQYQSYRDCQCLQETSPFTREVHHTCVQLD
FT PLSPSTDGEHSPSSGSPAVLRQHREIWF"
XX
SQ Sequence 4326 BP; 1216 A; 1113 C; 1051 G; 946 T; 0 other;
U55002 Length: 4326 December 21, 2001 15:59 Type: N Check: 5411 ..
1 gggtattggc tgcaacccat acctgaagat ggagtcgctc atacagcaca
51 ttctctctgc tacatcttcg ctttccatgc catcagtgga cagtgacaaa
101 ctgcaactac tacttacacg cttcccacag gctacactct catggctgag
151 tggaatagac ggcctaagcg tgcatcaatt caaggtagtg gctacccacg
201 taatcaagga aagctattcc catctctcac cttccgttgc agtgttgctg
251 gcgaagccca gtgactacta caagctggtg gtccacggac tcacccaaaa
301 gcaatggaac gagtttgacg ataaagtcac agacgctccg cggaccgcta
351 tatcatggtt atacaaccaa attttggtag ttggacagcc atggatgaag
401 agtctgaacg agggattaaa ggaatacctg ccaggttggc ttcacacctg
451 tctaagaatg ctagccaatc tgtggttcgg ggctgaaaga gttctacatg
501 gcatttcaca cgccgtcagt gacatcacta catatcaacc atggatgtca
551 tgtcggagat gtgtcgcaca tagccccaaa gagagcttgc taggcgaggc
601 aaccaccacc tccaaccccc gagagtcttc ttggttttca tggttgttgt
651 gcggaggagt ggtagcggca acggtatatg gattctacaa atgggttacc
701 atcacggaga ccattgaccg ccaggaccta gcaaaacaga ggcccactca
751 tatgcagaag tgctatgaag aagtgaaggc ccgactagag gaggaaagca
801 aagggttcat tcacgaccgg atggaagacg aactcaccaa aatcgtgcta
851 gagccagctg aaattgacaa tgacggcaaa gtgcttaaat ctgaggtggc
901 acaatacctg gttaaaaatc atggccgttt cgtccgctcc ctagtaacaa
951 tggcaaagaa cgaattcgct ggggttccaa aacccacaga ggctaaccag
1001 ttggctgtct ggagatacct ctacagggtg tgtgataaga aaggagttaa
1051 cccctcggac acacagaaaa gcatatccgc tgccttgcca tttgtattcc
1101 tgcctagcgc atacgaccag gatcaggcca tcactatgaa ctgtgatgac
1151 accaagaaag tgcttgagcg ctatgcagac acatttcgac acaccacccc
1201 actgcaaaaa ctagtgacca atccattagt tggggccaat tggactgctt
1251 gggcaagatc catttttatc tcggacccgg aaacgggtct gaggtttgcc
1301 aagtaggggt gtatcgaaaa gtggcagggg gtccagtgca agcgcactcg
1351 ggtccgacac ccccgtctca gatgccactt taaagatagg gaccccaagg
1401 tacgcagtat ttaccgtatc gctggactgg gcgatcagta tgagtttggg
1451 cttcacaaca acagtgctgc gaaccttgaa aggggcttag ccgaaagggt
1501 gtacatggtc aagaattaca agacagactt tgtagcctca cttgaccctg
1551 cgttttgccc tgccccagaa ccagtcagag gcatattcaa acgcctagac
1601 aaatacaaga aggagattgt gagacgagtc ggtaggaaga gtccaatcac
1651 tgacgagatg ttcctttctt actatgatgg tccccagttg accacttata
1701 gcaaggctgt gatttccttg tccgaacgcc ctgtggctgt ccaagactca
1751 tatcttaaaa ccttcatcaa ggcggagaaa ttaaacctca cactcaagac
1801 agacccctgt cctagggtca tacaaccacg tcaccccaga tacaatgtcg
1851 agttgggtaa gtatctcaag cacatagaac acccaatcta taaagccata
1901 gacagaatat ggggggggaa gacaatattt aaaggcatga atgtagaggc
1951 tatgggcgcc gaaatccaca agaaaatgtg caaatactcc aacccttgcg
2001 caataggatt tgacgcctcc cgtttcgatc agcacgtatc tgtagaagcg
2051 ctaagatttg agcactccat ctacaaatct attcacggat accctgaact
2101 gcttagtcta ctactcaaat ggcaaatcca caaccagggc actgcacaca
2151 ccaatgatgg atttttcaag tacttagtag acggaaagag gatgtctggt
2201 gacatgaaca ccagtctggg aaactgcatt ttggcatcgc taatagtgaa
2251 agacttggtt gacagtctag gcgttgatgc tcaactcgtc aacaatggag
2301 acgacaatgt cctaatctgc tcggtggatg atgaggaagt ggtagtcaag
2351 gcattgtacg accattggat gaagtatggg tttgaggtcg tagcagagca
2401 accagtctat atcacagagc aaatagaatt ctgccaaatg aagccagttt
2451 ttgacggaac ccagtatgtc ctcgtcagaa acccaactgt taccatgagt
2501 aaagatgcgt gcagcattac tcctttttac acagcgaaca gcgctcgcaa
2551 atggtgtaga gcagttggag aagcaggatt aagtctgaca ggtggtatgc
2601 ccatcaaaca agcgtattac cagtgcatga ttcgaaacgg cattaacaag
2651 ggtaacatcc acaagtcaaa ggagtttagg tacgggttat cttacgtgct
2701 acaccacggc aaatccgacc ggaaggcccg ccccatttca gcggcgacca
2751 gatattcatt ctaccttgca tttggctaca ctcctgacga gcaaacagcc
2801 ttggaaggtt attatgactc ccttgaattg gagtggaccg aatccaggtt
2851 gggtattcct gcaagaacgc ccgaatgtct actgttgaga ctcctgccca
2901 agataccctt gcaaccaaag agcccaacaa aaccggtgca aaggaccgcc
2951 agcaagccag atctgccaga ctctcagtgg cagcaggcgc tggccgcacc
3001 gctttaagcc aacgagacgc acaagaagac aggttcagcc taggaattgt
3051 tcaaactgct gacaagattg aaaatacttt caacttcaat ttctagtggc
3101 gaccggcaag tgctattgtc ccgaggaccc aagagttggg cccctcctag
3151 tactctgcct acttctatta ctgatcctgt tttcacggtc gtggaacgta
3201 gctccagtgg tggttccctc ataccacaca gtgtaccatc acgagaaata
3251 ccaaaacatt gagatccaga aatgaatcgc aatggagcta cccctaccag
3301 aggacgtggc aagcgtgcta tacctaaccc ccctcgccgc cgtgcgagag
3351 gtaaatctgt ggaacggggc tccacccccc tacagtatgt tacaactctg
3401 ggcccgagta gaccacgcat gggccaagga cagggttggc agaagttatc
3451 ccacgaggaa atcatacttc aagtcaactc gtctactgcc gcggacacta
3501 tacagacaat accaatcata ccgcgattgt cagtgcctgc aggagacaag
3551 cccatttact cgggaagtgc accacacctg cgtacaattg gatccgcttt
3601 cgccatccac agatggcgag cactctcctt cgagtggatc cccagctgtc
3651 ctacgacaac accgggaaat ctggttttga ggttctatcc gaactacagc
3701 acggaaacac ctaagaccct cacagacctg atggacagcg aatccctcgt
3751 gttagtccct tccctctccg ggaaaactta ccgccctaag atcgaaacac
3801 gaggaaaccc accggaattg cgcaacatag atgccaccgc tttctccgct
3851 ctcagcgacg aagataaggg tgactactcg gtgggaaggc tggttgttgg
3901 ctccagcaaa caagctgtcg tgatacagct cggactcctc cgcatgagat
3951 actcagctga aatgcgggga gcaacctcca tcagtggggt tagcgcataa
4001 acctgcccaa ggttatcaca ggctaggacc ggcctgataa aggtccgact
4051 tgatgtgcag cttcttaggt gcatctcgta tagaagcgct ctggacatga
4101 cacctttgag acagaccgta cagcagtcac acgggacgcc acaccacctt
4151 tgcagaggtg cccttgggaa accaatggtg tggggtgaca ctgattagtc
4201 gttaacggtg tactaatcca gagtagttca gtgcagggga aacccgggcc
4251 gtaagcacgt ggaactatat aacttaatct cgctgagaag attggggggg
4301 attcatgaaa tcccctcacc aggccc