Sequence of DPV Carrot mottle mimic virus
Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.
ACC No: U57305
Dated: 2008-11-26 | Length: 4201 | CRC: -1387208565
ID U57305; SV 1; linear; genomic RNA; STD; VRL; 4201 BP. XX AC U57305; XX DT 12-JUN-1996 (Rel. 48, Created) DT 26-NOV-2008 (Rel. 97, Last updated, Version 8) XX DE Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome. XX KW . XX OS Carrot mottle mimic virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus. XX RN [1] RC http://www.bspp.org.uk/mppol/1996/1111gibbs RP 1-4201 RA Gibbs M.J., Ziegler A., Robinson D.J., Waterhouse P.M., Cooper J.I.; RT "Carrot mottle mimic virus (CMoMV): A second umbravirus associated with RT carrot motley dwarf disease recognised by nucleic acid hybridisation"; RL Mol. Plant Pathol. 0:0-0(1996). XX RN [2] RP 1-4201 RX DOI; 10.1006/viro.1996.0533. RX PUBMED; 8862426. RA Gibbs M.J., Cooper J.I., Waterhouse P.M.; RT "The genome organization and affinities of an Australian isolate of carrot RT mottle umbravirus"; RL Virology 224(1):310-313(1996). XX RN [3] RP 1-4201 RA Gibbs M.J.; RT ; RL Submitted (30-APR-1996) to the EMBL/GenBank/DDBJ databases. RL Mark J. Gibbs, Division of Plant Industry, Commonwealth Scientific Research RL and Industrial Organisation, Black Mountain Laboratories, Canberra, ACT GPO RL Box 1600, Australia XX FH Key Location/Qualifiers FH FT source 1. .4201 FT /organism="Carrot mottle mimic virus" FT /isolate="Australian" FT /mol_type="genomic RNA" FT /note="cDNA was synthesised to viral dsRNA (replicative FT form). All 4201 nucleotide residues were determined from FT cDNA sequenced in both orientations and except for the 5' FT terminal 126 nucleotides and the 3' terminal 101 FT nucleotides, the sequence was determined from two or more FT independently generated clones. At sixteen positions the FT identity of a nucleotide differed when read from different FT clones spanning the same region." FT /db_xref="taxon:47736" FT CDS 9. .1037 FT /codon_start=1 FT /product="unknown" FT /note="ORF1" FT /protein_id="AAB81638.1" FT /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLITQARMTTAH FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKLSSPPTRGCGGTTVNADGGL FT VENPLPTNRDEMPASSMQMNAPSGGIAVASVNSEVARWVFALPRELDEPIMETPVDPSA FT PTEAERELARVLNNTVAVGDTASALSTIQEEPQHEVIAVPGTAVGVVHQEDPAPVEGSP FT STRDAAMEGDAGHSAHAGDDTDASVEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR FT FGLRPASPANIELGARVAREILKTAGARRQDNYYLAQQAVKFFLTPTLLDVVYSTPIRD FT FY" FT variation 654 FT /replace="a" FT variation 878 FT /replace="a" FT variation 883 FT /replace="c" FT variation 915 FT /replace="t" FT CDS <947. .2656 FT /codon_start=1 FT /product="RNA-dependent RNA polymerase" FT /note="ORF2" FT /protein_id="AAB81639.1" FT /translation="LLSGPAGSQVFPDADTPGCGVQHTHPGFLLGDVIARDGVCTKTVP FT IILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSLVNLVRGINERVFYTDNRG FT SLPVRPTPGRFDRLTVDIKHFKINAWSMEDVVNSYTGRQRARYEQAMLSIMERPLERRD FT ARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIKPLEPMLYKALGRLYEQPC FT VAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRFNSSKEF FT VDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPH FT ELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDG FT TQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAGGLPVFGSFYRWLCRIGKA FT NTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFGLSIPMQIALEGIYDNLKR FT PGRVVPGACERRGFNDWFIPDVQCLNPSRSAVHTDEVEVEVDFLYPPPVSAC" FT misc_signal 992. .1132 FT /note="region with RNA structural features probably FT required from -1 ribosomal frameshifting" FT misc_signal 1025. .1031 FT /note="slippery heptanucleotide for -1 ribosomal FT frameshifting from ORF1 to ORF2" FT variation 1327 FT /replace="c" FT variation 1993 FT /replace="t" FT variation 2221 FT /replace="g" FT variation 2314 FT /replace="a" FT variation 2317 FT /replace="g" FT variation 2723 FT /replace="g" FT variation 2770 FT /replace="c" FT variation 2773 FT /replace="t" FT CDS 2790. .3575 FT /codon_start=1 FT /product="unknown" FT /note="ORF3" FT /protein_id="AAB81640.1" FT /translation="MNLQIQPIGDGNNSSRNSRRPNQPSPRRRDPRQASGSWLWCPNTS FT PRQQYPYMYATIPPRAPTNGPGFLYPEMAHEAQWGSPVYREASSGIPATRARRNRGRGS FT VVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDPASRH FT PPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTGTTAAVSERRA FT DEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF" FT CDS 2818. .3606 FT /codon_start=1 FT /product="movement protein" FT /note="ORF4" FT /protein_id="AAB81641.1" FT /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT FT PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS FT DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF FT SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR FT GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE" FT variation 3681 FT /replace="t" FT variation 3740 FT /replace="t" FT variation 3757 FT /replace="g" FT variation 3965 FT /replace="a" FT misc_signal 4169. .4201 FT /note="region with RNA structural features probably FT required for genomic replication" XX SQ Sequence 4201 BP; 1050 A; 1073 C; 1135 G; 943 T; 0 other; u57305 Length: 4201 26-NOV-2008 Type: N Check: 8674 .. 1 gcaacgttat ggatcacata actaagttct tgcgaatgga cttctcgccc 51 aaagatggcg tcctaaccag acgccaatgt gctgaacgct tcgatgacac 101 ctggggactc ttaattaccc aggcgagaat gaccacagcg cacacagcgg 151 atatgtgtgc atggtacgag gggtcccggg agaccaacca gtacctcccc 201 ctagagcagt tcgtggactc cagggatgcc agcaaggaag ctgaagacaa 251 ggtggacaaa ttgtcctccc cccctacccg aggctgtggt ggtaccacgg 301 taaatgctga tgggggcctt gtggagaacc ctctcccaac taatagggat 351 gagatgcctg catctagcat gcagatgaat gccccatcgg gtggcattgc 401 cgtggcctct gttaatagtg aggtcgcgcg ttgggtattt gctctacccc 451 gtgaactgga tgaacctatt atggagactc cagtagaccc gtctgctcct 501 acagaggcag aacgtgagtt ggcgcgggta ttgaacaata ccgttgctgt 551 cggggacact gcatcggcac tgtccaccat ccaggaagag ccacaacacg 601 aggtaattgc tgtgcctggg acagccgtag gagtggtcca ccaagaggac 651 ccagccccag tagagggctc ccctagtaca agggatgccg ccatggaagg 701 cgatgcgggc cactcagccc atgccggtga tgacaccgat gcctcagtgg 751 agatgcccac gacagtggaa gcagcagggc ccctaatgga agaggggcca 801 tccatggctc acttaacgag ctatacagta gccatggaac tcaggtctag 851 attcggcctg cgaccggcca gccccgctaa tatagaatta ggggcgcgag 901 ttgctaggga aatcctgaag accgctgggg ccagacgcca agataactac 951 tatctggccc agcaggcagt caagtttttc ctgacgccga cactcctgga 1001 tgtggtgtac agcacaccca tccgggattt ttactagggg acgtcattgc 1051 aagggatggg gtgtgtacta aaacagtgcc tatcatattg agcccctcct 1101 tgcacatcag gccgtccgca cgtccccggc ctgttaaaag ggtatcttac 1151 cagattgacg cggtaaggcc ctctgctgat tttggagttc acaacaactc 1201 cttggtgaat ctcgtgaggg gaataaatga gcgagtgttc tacactgata 1251 atcgtggctc tcttcctgtt agacccaccc caggtaggtt tgaccgtctg 1301 actgtcgaca taaagcactt caaaattaat gcttggtcca tggaagacgt 1351 cgtcaacagt tataccggga gacaaagggc aaggtatgag caagcgatgt 1401 tgtctatcat ggaacgaccg ctagaacgga gggatgctag agtgtctaca 1451 tttataaaag cggagaagat caacttttct gccaagccgg acccagctcc 1501 ccgagtcatc caacctcgag atcccaggtt caatgtggta ttcgcgaaat 1551 acattaaacc acttgagcca atgttgtata aagctctggg caggttgtat 1601 gaacaaccgt gtgtcgccaa gggatttaat gccttccaaa ctggtgagat 1651 aattaggaag aagtgggatt cattccgaaa tccagtttgt gtagggctag 1701 acgctagccg atttgaccag catgtgtcag ttgaagcttt aaagttcaca 1751 cattctgtgt acaagcggtt caattcctct aaggagtttg tggacctgct 1801 caaccagatg tatgttaatc gtggacttgg cacttgcaaa gatggtctcg 1851 ttaagtataa ggtgaagggt tgcagaatga gcggtgatat ggataccgcc 1901 ctgggcaatt gtgttctcat ggtcctaatg acacgaaatt tgtgtttaga 1951 cctgtccatc ccccatgagt tgatggacaa tggtgacgat tgcatcgtca 2001 tctttgagaa ggaacatttg caaaggttta atgcagctgt caagccatac 2051 ttcgcagcgt tgggcttcac catgaaagta gaagcccctg tttaccaatt 2101 tgagaaagtc gaattttgcc aaacccagcc agtatttgat ggcacccaat 2151 ggagaatggt taggcaaatt cctagtatcg ctaaagacct atgtagcgta 2201 atcgattggg aacagctaga atcttggtgg cacgcgatag gaaactgcgg 2251 ccagagcttg gcgggaggat tgccagtgtt tggcagtttt taccgttggt 2301 tgtgtagaat tgggaaagct aatactaaag tgaccgagca tccactgtac 2351 aaatgcggca tggtcaacct ttcccgtggg atggatgcgc gagataagcc 2401 catcacaact gagggacgcc ttagtttcag cttggcgttt ggattgtcta 2451 ttccaatgca aatagcattg gagggtatat atgacaatct taagagacca 2501 ggtagggtag tcccgggggc ttgtgaaagg cgaggattta atgactggtt 2551 cataccagat gttcagtgcc ttaacccatc cagatctgca gtccacaccg 2601 acgaggttga ggtggaggtt gatttcctct accctcctcc cgtttccgcc 2651 tgttgaggca gtcacgtagc tagtaccagg ttgcaatact agagcgttag 2701 tcctggggcg tccctttggt ggagggccgt caaacctaga taactcagtc 2751 acccaatcct ccactaggct ctggaggttg ggcatcgtca tgaacctaca 2801 gatacaacca ataggcgatg gcaataattc aagcaggaac tcgagaagac 2851 ctaatcaacc ttctccacgg cgcagggatc caagacaagc ttcgggatct 2901 tggctttggt gtcctaacac cagcccgagg cagcaatacc cttacatgta 2951 cgccactata ccccccagag caccaacgaa cggtccggga tttctttacc 3001 cggaaatggc gcacgaagcg cagtgggggt ctcctgttta tagagaagct 3051 agtagtggca ttcctgccac acgtgcccga cggaaccgcg ggcgaggtag 3101 tgttgtggct ccacgatacg gccctgtcgg acctggaacc ggtaggccgc 3151 aaagtgtcac tgagcctcag cgggggaccg cggctggtcg ctttctatcc 3201 gaattactct attcctttga gcgattcggc agagagtgcc ccgcgatgtt 3251 tctccctagt gacccagctt caaggcatcc gcctgaagac tggctccagc 3301 gccttctccc tgctctcaat gtggaaccca gtcataggag agaaggccca 3351 acactaccaa gcaacagagc cggagtgtgt gcccatagta aggcactcga 3401 taaggagctc gttgcagaca ctggcactac agcggcagta tctgaacgcc 3451 gcgctgacga acccactagg aaggagccag aggggcagcc aatcactgag 3501 gcaccctcca ctggactatg ctctaagccc cacacgagag gcgagcagtg 3551 ttcagatccc accctccact tctagtgcca ccaaagccca ccaatacctt 3601 gagtaagcat tggtgcgtat ctgtactcac ggcacccggg ttgtagatag 3651 tttcccccgc gtagccagat cccatggatg gcggccatta acttgccctg 3701 cccatggtta aatagaagag tgttactagt tagatgacac cgggactaga 3751 ggccaaatcg ccctggaatg ggaaggaggc gagaccaatg gtacgccgtg 3801 gcttcagggg tgtggctggt taccacaccc ggtataactc tgagtccagt 3851 gagtggataa actagtagct agatgcgcct tgagcctcgt tgggattggc 3901 agcatcactc ttgatatgca tggtggagcc aaaactccag gtgaataacc 3951 caccagcacc aaacaaatcc tcccccccct tagtataggt ctcgatctta 4001 gagacaaaac cacacagtga tcagagatac tgtgtgggtg gttgaggagt 4051 cacagcccaa gctgtgcatt agccgtgcta ggctcgaccg caatgtcgta 4101 aacttgtccg ccttgagaac tggcagttac tgggatcggg catataatag 4151 gtaccagagc tctccatctg atttagcgct gtcgcggacg gcagcgcgcc 4201 c