Sequence of DPV Carrot mottle mimic virus

Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.

ACC No: U57305

Dated: 2008-11-26 | Length: 4201 | CRC: -1387208565

                
ID   U57305; SV 1; linear; genomic RNA; STD; VRL; 4201 BP.
XX
AC   U57305;
XX
DT   12-JUN-1996 (Rel. 48, Created)
DT   26-NOV-2008 (Rel. 97, Last updated, Version 8)
XX
DE   Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.
XX
KW   .
XX
OS   Carrot mottle mimic virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN   [1]
RC   http://www.bspp.org.uk/mppol/1996/1111gibbs
RP   1-4201
RA   Gibbs M.J., Ziegler A., Robinson D.J., Waterhouse P.M., Cooper J.I.;
RT   "Carrot mottle mimic virus (CMoMV): A second umbravirus associated with
RT   carrot motley dwarf disease recognised by nucleic acid hybridisation";
RL   Mol. Plant Pathol. 0:0-0(1996).
XX
RN   [2]
RP   1-4201
RX   DOI; 10.1006/viro.1996.0533.
RX   PUBMED; 8862426.
RA   Gibbs M.J., Cooper J.I., Waterhouse P.M.;
RT   "The genome organization and affinities of an Australian isolate of carrot
RT   mottle umbravirus";
RL   Virology 224(1):310-313(1996).
XX
RN   [3]
RP   1-4201
RA   Gibbs M.J.;
RT   ;
RL   Submitted (30-APR-1996) to the EMBL/GenBank/DDBJ databases.
RL   Mark J. Gibbs, Division of Plant Industry, Commonwealth Scientific Research
RL   and Industrial Organisation, Black Mountain Laboratories, Canberra, ACT GPO
RL   Box 1600, Australia
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .4201
FT                   /organism="Carrot mottle mimic virus"
FT                   /isolate="Australian"
FT                   /mol_type="genomic RNA"
FT                   /note="cDNA was synthesised to viral dsRNA (replicative
FT                   form). All 4201 nucleotide residues were determined from
FT                   cDNA sequenced in both orientations and except for the 5'
FT                   terminal 126 nucleotides and the 3' terminal 101
FT                   nucleotides, the sequence was determined from two or more
FT                   independently generated clones. At sixteen positions the
FT                   identity of a nucleotide differed when read from different
FT                   clones spanning the same region."
FT                   /db_xref="taxon:47736"
FT   CDS             9. .1037
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="ORF1"
FT                   /protein_id="AAB81638.1"
FT                   /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLITQARMTTAH
FT                   TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKLSSPPTRGCGGTTVNADGGL
FT                   VENPLPTNRDEMPASSMQMNAPSGGIAVASVNSEVARWVFALPRELDEPIMETPVDPSA
FT                   PTEAERELARVLNNTVAVGDTASALSTIQEEPQHEVIAVPGTAVGVVHQEDPAPVEGSP
FT                   STRDAAMEGDAGHSAHAGDDTDASVEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR
FT                   FGLRPASPANIELGARVAREILKTAGARRQDNYYLAQQAVKFFLTPTLLDVVYSTPIRD
FT                   FY"
FT   variation       654
FT                   /replace="a"
FT   variation       878
FT                   /replace="a"
FT   variation       883
FT                   /replace="c"
FT   variation       915
FT                   /replace="t"
FT   CDS             <947. .2656
FT                   /codon_start=1
FT                   /product="RNA-dependent RNA polymerase"
FT                   /note="ORF2"
FT                   /protein_id="AAB81639.1"
FT                   /translation="LLSGPAGSQVFPDADTPGCGVQHTHPGFLLGDVIARDGVCTKTVP
FT                   IILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSLVNLVRGINERVFYTDNRG
FT                   SLPVRPTPGRFDRLTVDIKHFKINAWSMEDVVNSYTGRQRARYEQAMLSIMERPLERRD
FT                   ARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIKPLEPMLYKALGRLYEQPC
FT                   VAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRFNSSKEF
FT                   VDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPH
FT                   ELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDG
FT                   TQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAGGLPVFGSFYRWLCRIGKA
FT                   NTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFGLSIPMQIALEGIYDNLKR
FT                   PGRVVPGACERRGFNDWFIPDVQCLNPSRSAVHTDEVEVEVDFLYPPPVSAC"
FT   misc_signal     992. .1132
FT                   /note="region with RNA structural features probably
FT                   required from -1 ribosomal frameshifting"
FT   misc_signal     1025. .1031
FT                   /note="slippery heptanucleotide for -1 ribosomal
FT                   frameshifting from ORF1 to ORF2"
FT   variation       1327
FT                   /replace="c"
FT   variation       1993
FT                   /replace="t"
FT   variation       2221
FT                   /replace="g"
FT   variation       2314
FT                   /replace="a"
FT   variation       2317
FT                   /replace="g"
FT   variation       2723
FT                   /replace="g"
FT   variation       2770
FT                   /replace="c"
FT   variation       2773
FT                   /replace="t"
FT   CDS             2790. .3575
FT                   /codon_start=1
FT                   /product="unknown"
FT                   /note="ORF3"
FT                   /protein_id="AAB81640.1"
FT                   /translation="MNLQIQPIGDGNNSSRNSRRPNQPSPRRRDPRQASGSWLWCPNTS
FT                   PRQQYPYMYATIPPRAPTNGPGFLYPEMAHEAQWGSPVYREASSGIPATRARRNRGRGS
FT                   VVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDPASRH
FT                   PPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTGTTAAVSERRA
FT                   DEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF"
FT   CDS             2818. .3606
FT                   /codon_start=1
FT                   /product="movement protein"
FT                   /note="ORF4"
FT                   /protein_id="AAB81641.1"
FT                   /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT
FT                   PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS
FT                   DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF
FT                   SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR
FT                   GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE"
FT   variation       3681
FT                   /replace="t"
FT   variation       3740
FT                   /replace="t"
FT   variation       3757
FT                   /replace="g"
FT   variation       3965
FT                   /replace="a"
FT   misc_signal     4169. .4201
FT                   /note="region with RNA structural features probably
FT                   required for genomic replication"
XX
SQ   Sequence 4201 BP; 1050 A; 1073 C; 1135 G; 943 T; 0 other;

u57305 Length: 4201  26-NOV-2008  Type: N  Check: 8674  ..

       1  gcaacgttat ggatcacata actaagttct tgcgaatgga cttctcgccc
      51  aaagatggcg tcctaaccag acgccaatgt gctgaacgct tcgatgacac
     101  ctggggactc ttaattaccc aggcgagaat gaccacagcg cacacagcgg
     151  atatgtgtgc atggtacgag gggtcccggg agaccaacca gtacctcccc
     201  ctagagcagt tcgtggactc cagggatgcc agcaaggaag ctgaagacaa
     251  ggtggacaaa ttgtcctccc cccctacccg aggctgtggt ggtaccacgg
     301  taaatgctga tgggggcctt gtggagaacc ctctcccaac taatagggat
     351  gagatgcctg catctagcat gcagatgaat gccccatcgg gtggcattgc
     401  cgtggcctct gttaatagtg aggtcgcgcg ttgggtattt gctctacccc
     451  gtgaactgga tgaacctatt atggagactc cagtagaccc gtctgctcct
     501  acagaggcag aacgtgagtt ggcgcgggta ttgaacaata ccgttgctgt
     551  cggggacact gcatcggcac tgtccaccat ccaggaagag ccacaacacg
     601  aggtaattgc tgtgcctggg acagccgtag gagtggtcca ccaagaggac
     651  ccagccccag tagagggctc ccctagtaca agggatgccg ccatggaagg
     701  cgatgcgggc cactcagccc atgccggtga tgacaccgat gcctcagtgg
     751  agatgcccac gacagtggaa gcagcagggc ccctaatgga agaggggcca
     801  tccatggctc acttaacgag ctatacagta gccatggaac tcaggtctag
     851  attcggcctg cgaccggcca gccccgctaa tatagaatta ggggcgcgag
     901  ttgctaggga aatcctgaag accgctgggg ccagacgcca agataactac
     951  tatctggccc agcaggcagt caagtttttc ctgacgccga cactcctgga
    1001  tgtggtgtac agcacaccca tccgggattt ttactagggg acgtcattgc
    1051  aagggatggg gtgtgtacta aaacagtgcc tatcatattg agcccctcct
    1101  tgcacatcag gccgtccgca cgtccccggc ctgttaaaag ggtatcttac
    1151  cagattgacg cggtaaggcc ctctgctgat tttggagttc acaacaactc
    1201  cttggtgaat ctcgtgaggg gaataaatga gcgagtgttc tacactgata
    1251  atcgtggctc tcttcctgtt agacccaccc caggtaggtt tgaccgtctg
    1301  actgtcgaca taaagcactt caaaattaat gcttggtcca tggaagacgt
    1351  cgtcaacagt tataccggga gacaaagggc aaggtatgag caagcgatgt
    1401  tgtctatcat ggaacgaccg ctagaacgga gggatgctag agtgtctaca
    1451  tttataaaag cggagaagat caacttttct gccaagccgg acccagctcc
    1501  ccgagtcatc caacctcgag atcccaggtt caatgtggta ttcgcgaaat
    1551  acattaaacc acttgagcca atgttgtata aagctctggg caggttgtat
    1601  gaacaaccgt gtgtcgccaa gggatttaat gccttccaaa ctggtgagat
    1651  aattaggaag aagtgggatt cattccgaaa tccagtttgt gtagggctag
    1701  acgctagccg atttgaccag catgtgtcag ttgaagcttt aaagttcaca
    1751  cattctgtgt acaagcggtt caattcctct aaggagtttg tggacctgct
    1801  caaccagatg tatgttaatc gtggacttgg cacttgcaaa gatggtctcg
    1851  ttaagtataa ggtgaagggt tgcagaatga gcggtgatat ggataccgcc
    1901  ctgggcaatt gtgttctcat ggtcctaatg acacgaaatt tgtgtttaga
    1951  cctgtccatc ccccatgagt tgatggacaa tggtgacgat tgcatcgtca
    2001  tctttgagaa ggaacatttg caaaggttta atgcagctgt caagccatac
    2051  ttcgcagcgt tgggcttcac catgaaagta gaagcccctg tttaccaatt
    2101  tgagaaagtc gaattttgcc aaacccagcc agtatttgat ggcacccaat
    2151  ggagaatggt taggcaaatt cctagtatcg ctaaagacct atgtagcgta
    2201  atcgattggg aacagctaga atcttggtgg cacgcgatag gaaactgcgg
    2251  ccagagcttg gcgggaggat tgccagtgtt tggcagtttt taccgttggt
    2301  tgtgtagaat tgggaaagct aatactaaag tgaccgagca tccactgtac
    2351  aaatgcggca tggtcaacct ttcccgtggg atggatgcgc gagataagcc
    2401  catcacaact gagggacgcc ttagtttcag cttggcgttt ggattgtcta
    2451  ttccaatgca aatagcattg gagggtatat atgacaatct taagagacca
    2501  ggtagggtag tcccgggggc ttgtgaaagg cgaggattta atgactggtt
    2551  cataccagat gttcagtgcc ttaacccatc cagatctgca gtccacaccg
    2601  acgaggttga ggtggaggtt gatttcctct accctcctcc cgtttccgcc
    2651  tgttgaggca gtcacgtagc tagtaccagg ttgcaatact agagcgttag
    2701  tcctggggcg tccctttggt ggagggccgt caaacctaga taactcagtc
    2751  acccaatcct ccactaggct ctggaggttg ggcatcgtca tgaacctaca
    2801  gatacaacca ataggcgatg gcaataattc aagcaggaac tcgagaagac
    2851  ctaatcaacc ttctccacgg cgcagggatc caagacaagc ttcgggatct
    2901  tggctttggt gtcctaacac cagcccgagg cagcaatacc cttacatgta
    2951  cgccactata ccccccagag caccaacgaa cggtccggga tttctttacc
    3001  cggaaatggc gcacgaagcg cagtgggggt ctcctgttta tagagaagct
    3051  agtagtggca ttcctgccac acgtgcccga cggaaccgcg ggcgaggtag
    3101  tgttgtggct ccacgatacg gccctgtcgg acctggaacc ggtaggccgc
    3151  aaagtgtcac tgagcctcag cgggggaccg cggctggtcg ctttctatcc
    3201  gaattactct attcctttga gcgattcggc agagagtgcc ccgcgatgtt
    3251  tctccctagt gacccagctt caaggcatcc gcctgaagac tggctccagc
    3301  gccttctccc tgctctcaat gtggaaccca gtcataggag agaaggccca
    3351  acactaccaa gcaacagagc cggagtgtgt gcccatagta aggcactcga
    3401  taaggagctc gttgcagaca ctggcactac agcggcagta tctgaacgcc
    3451  gcgctgacga acccactagg aaggagccag aggggcagcc aatcactgag
    3501  gcaccctcca ctggactatg ctctaagccc cacacgagag gcgagcagtg
    3551  ttcagatccc accctccact tctagtgcca ccaaagccca ccaatacctt
    3601  gagtaagcat tggtgcgtat ctgtactcac ggcacccggg ttgtagatag
    3651  tttcccccgc gtagccagat cccatggatg gcggccatta acttgccctg
    3701  cccatggtta aatagaagag tgttactagt tagatgacac cgggactaga
    3751  ggccaaatcg ccctggaatg ggaaggaggc gagaccaatg gtacgccgtg
    3801  gcttcagggg tgtggctggt taccacaccc ggtataactc tgagtccagt
    3851  gagtggataa actagtagct agatgcgcct tgagcctcgt tgggattggc
    3901  agcatcactc ttgatatgca tggtggagcc aaaactccag gtgaataacc
    3951  caccagcacc aaacaaatcc tcccccccct tagtataggt ctcgatctta
    4001  gagacaaaac cacacagtga tcagagatac tgtgtgggtg gttgaggagt
    4051  cacagcccaa gctgtgcatt agccgtgcta ggctcgaccg caatgtcgta
    4101  aacttgtccg ccttgagaac tggcagttac tgggatcggg catataatag
    4151  gtaccagagc tctccatctg atttagcgct gtcgcggacg gcagcgcgcc
    4201  c