Sequence of DPV Carrot mottle mimic virus
Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.
ACC No: U57305
Dated: 2008-11-26 | Length: 4201 | CRC: -1387208565
ID U57305; SV 1; linear; genomic RNA; STD; VRL; 4201 BP.
XX
AC U57305;
XX
DT 12-JUN-1996 (Rel. 48, Created)
DT 26-NOV-2008 (Rel. 97, Last updated, Version 8)
XX
DE Carrot mottle mimic umbravirus (CMoMV) dsRNA1, complete genome.
XX
KW .
XX
OS Carrot mottle mimic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Umbravirus.
XX
RN [1]
RC http://www.bspp.org.uk/mppol/1996/1111gibbs
RP 1-4201
RA Gibbs M.J., Ziegler A., Robinson D.J., Waterhouse P.M., Cooper J.I.;
RT "Carrot mottle mimic virus (CMoMV): A second umbravirus associated with
RT carrot motley dwarf disease recognised by nucleic acid hybridisation";
RL Mol. Plant Pathol. 0:0-0(1996).
XX
RN [2]
RP 1-4201
RX DOI; 10.1006/viro.1996.0533.
RX PUBMED; 8862426.
RA Gibbs M.J., Cooper J.I., Waterhouse P.M.;
RT "The genome organization and affinities of an Australian isolate of carrot
RT mottle umbravirus";
RL Virology 224(1):310-313(1996).
XX
RN [3]
RP 1-4201
RA Gibbs M.J.;
RT ;
RL Submitted (30-APR-1996) to the EMBL/GenBank/DDBJ databases.
RL Mark J. Gibbs, Division of Plant Industry, Commonwealth Scientific Research
RL and Industrial Organisation, Black Mountain Laboratories, Canberra, ACT GPO
RL Box 1600, Australia
XX
FH Key Location/Qualifiers
FH
FT source 1. .4201
FT /organism="Carrot mottle mimic virus"
FT /isolate="Australian"
FT /mol_type="genomic RNA"
FT /note="cDNA was synthesised to viral dsRNA (replicative
FT form). All 4201 nucleotide residues were determined from
FT cDNA sequenced in both orientations and except for the 5'
FT terminal 126 nucleotides and the 3' terminal 101
FT nucleotides, the sequence was determined from two or more
FT independently generated clones. At sixteen positions the
FT identity of a nucleotide differed when read from different
FT clones spanning the same region."
FT /db_xref="taxon:47736"
FT CDS 9. .1037
FT /codon_start=1
FT /product="unknown"
FT /note="ORF1"
FT /protein_id="AAB81638.1"
FT /translation="MDHITKFLRMDFSPKDGVLTRRQCAERFDDTWGLLITQARMTTAH
FT TADMCAWYEGSRETNQYLPLEQFVDSRDASKEAEDKVDKLSSPPTRGCGGTTVNADGGL
FT VENPLPTNRDEMPASSMQMNAPSGGIAVASVNSEVARWVFALPRELDEPIMETPVDPSA
FT PTEAERELARVLNNTVAVGDTASALSTIQEEPQHEVIAVPGTAVGVVHQEDPAPVEGSP
FT STRDAAMEGDAGHSAHAGDDTDASVEMPTTVEAAGPLMEEGPSMAHLTSYTVAMELRSR
FT FGLRPASPANIELGARVAREILKTAGARRQDNYYLAQQAVKFFLTPTLLDVVYSTPIRD
FT FY"
FT variation 654
FT /replace="a"
FT variation 878
FT /replace="a"
FT variation 883
FT /replace="c"
FT variation 915
FT /replace="t"
FT CDS <947. .2656
FT /codon_start=1
FT /product="RNA-dependent RNA polymerase"
FT /note="ORF2"
FT /protein_id="AAB81639.1"
FT /translation="LLSGPAGSQVFPDADTPGCGVQHTHPGFLLGDVIARDGVCTKTVP
FT IILSPSLHIRPSARPRPVKRVSYQIDAVRPSADFGVHNNSLVNLVRGINERVFYTDNRG
FT SLPVRPTPGRFDRLTVDIKHFKINAWSMEDVVNSYTGRQRARYEQAMLSIMERPLERRD
FT ARVSTFIKAEKINFSAKPDPAPRVIQPRDPRFNVVFAKYIKPLEPMLYKALGRLYEQPC
FT VAKGFNAFQTGEIIRKKWDSFRNPVCVGLDASRFDQHVSVEALKFTHSVYKRFNSSKEF
FT VDLLNQMYVNRGLGTCKDGLVKYKVKGCRMSGDMDTALGNCVLMVLMTRNLCLDLSIPH
FT ELMDNGDDCIVIFEKEHLQRFNAAVKPYFAALGFTMKVEAPVYQFEKVEFCQTQPVFDG
FT TQWRMVRQIPSIAKDLCSVIDWEQLESWWHAIGNCGQSLAGGLPVFGSFYRWLCRIGKA
FT NTKVTEHPLYKCGMVNLSRGMDARDKPITTEGRLSFSLAFGLSIPMQIALEGIYDNLKR
FT PGRVVPGACERRGFNDWFIPDVQCLNPSRSAVHTDEVEVEVDFLYPPPVSAC"
FT misc_signal 992. .1132
FT /note="region with RNA structural features probably
FT required from -1 ribosomal frameshifting"
FT misc_signal 1025. .1031
FT /note="slippery heptanucleotide for -1 ribosomal
FT frameshifting from ORF1 to ORF2"
FT variation 1327
FT /replace="c"
FT variation 1993
FT /replace="t"
FT variation 2221
FT /replace="g"
FT variation 2314
FT /replace="a"
FT variation 2317
FT /replace="g"
FT variation 2723
FT /replace="g"
FT variation 2770
FT /replace="c"
FT variation 2773
FT /replace="t"
FT CDS 2790. .3575
FT /codon_start=1
FT /product="unknown"
FT /note="ORF3"
FT /protein_id="AAB81640.1"
FT /translation="MNLQIQPIGDGNNSSRNSRRPNQPSPRRRDPRQASGSWLWCPNTS
FT PRQQYPYMYATIPPRAPTNGPGFLYPEMAHEAQWGSPVYREASSGIPATRARRNRGRGS
FT VVAPRYGPVGPGTGRPQSVTEPQRGTAAGRFLSELLYSFERFGRECPAMFLPSDPASRH
FT PPEDWLQRLLPALNVEPSHRREGPTLPSNRAGVCAHSKALDKELVADTGTTAAVSERRA
FT DEPTRKEPEGQPITEAPSTGLCSKPHTRGEQCSDPTLHF"
FT CDS 2818. .3606
FT /codon_start=1
FT /product="movement protein"
FT /note="ORF4"
FT /protein_id="AAB81641.1"
FT /translation="MAIIQAGTREDLINLLHGAGIQDKLRDLGFGVLTPARGSNTLTCT
FT PLYPPEHQRTVRDFFTRKWRTKRSGGLLFIEKLVVAFLPHVPDGTAGEVVLWLHDTALS
FT DLEPVGRKVSLSLSGGPRLVAFYPNYSIPLSDSAESAPRCFSLVTQLQGIRLKTGSSAF
FT SLLSMWNPVIGEKAQHYQATEPECVPIVRHSIRSSLQTLALQRQYLNAALTNPLGRSQR
FT GSQSLRHPPLDYALSPTREASSVQIPPSTSSATKAHQYLE"
FT variation 3681
FT /replace="t"
FT variation 3740
FT /replace="t"
FT variation 3757
FT /replace="g"
FT variation 3965
FT /replace="a"
FT misc_signal 4169. .4201
FT /note="region with RNA structural features probably
FT required for genomic replication"
XX
SQ Sequence 4201 BP; 1050 A; 1073 C; 1135 G; 943 T; 0 other;
u57305 Length: 4201 26-NOV-2008 Type: N Check: 8674 ..
1 gcaacgttat ggatcacata actaagttct tgcgaatgga cttctcgccc
51 aaagatggcg tcctaaccag acgccaatgt gctgaacgct tcgatgacac
101 ctggggactc ttaattaccc aggcgagaat gaccacagcg cacacagcgg
151 atatgtgtgc atggtacgag gggtcccggg agaccaacca gtacctcccc
201 ctagagcagt tcgtggactc cagggatgcc agcaaggaag ctgaagacaa
251 ggtggacaaa ttgtcctccc cccctacccg aggctgtggt ggtaccacgg
301 taaatgctga tgggggcctt gtggagaacc ctctcccaac taatagggat
351 gagatgcctg catctagcat gcagatgaat gccccatcgg gtggcattgc
401 cgtggcctct gttaatagtg aggtcgcgcg ttgggtattt gctctacccc
451 gtgaactgga tgaacctatt atggagactc cagtagaccc gtctgctcct
501 acagaggcag aacgtgagtt ggcgcgggta ttgaacaata ccgttgctgt
551 cggggacact gcatcggcac tgtccaccat ccaggaagag ccacaacacg
601 aggtaattgc tgtgcctggg acagccgtag gagtggtcca ccaagaggac
651 ccagccccag tagagggctc ccctagtaca agggatgccg ccatggaagg
701 cgatgcgggc cactcagccc atgccggtga tgacaccgat gcctcagtgg
751 agatgcccac gacagtggaa gcagcagggc ccctaatgga agaggggcca
801 tccatggctc acttaacgag ctatacagta gccatggaac tcaggtctag
851 attcggcctg cgaccggcca gccccgctaa tatagaatta ggggcgcgag
901 ttgctaggga aatcctgaag accgctgggg ccagacgcca agataactac
951 tatctggccc agcaggcagt caagtttttc ctgacgccga cactcctgga
1001 tgtggtgtac agcacaccca tccgggattt ttactagggg acgtcattgc
1051 aagggatggg gtgtgtacta aaacagtgcc tatcatattg agcccctcct
1101 tgcacatcag gccgtccgca cgtccccggc ctgttaaaag ggtatcttac
1151 cagattgacg cggtaaggcc ctctgctgat tttggagttc acaacaactc
1201 cttggtgaat ctcgtgaggg gaataaatga gcgagtgttc tacactgata
1251 atcgtggctc tcttcctgtt agacccaccc caggtaggtt tgaccgtctg
1301 actgtcgaca taaagcactt caaaattaat gcttggtcca tggaagacgt
1351 cgtcaacagt tataccggga gacaaagggc aaggtatgag caagcgatgt
1401 tgtctatcat ggaacgaccg ctagaacgga gggatgctag agtgtctaca
1451 tttataaaag cggagaagat caacttttct gccaagccgg acccagctcc
1501 ccgagtcatc caacctcgag atcccaggtt caatgtggta ttcgcgaaat
1551 acattaaacc acttgagcca atgttgtata aagctctggg caggttgtat
1601 gaacaaccgt gtgtcgccaa gggatttaat gccttccaaa ctggtgagat
1651 aattaggaag aagtgggatt cattccgaaa tccagtttgt gtagggctag
1701 acgctagccg atttgaccag catgtgtcag ttgaagcttt aaagttcaca
1751 cattctgtgt acaagcggtt caattcctct aaggagtttg tggacctgct
1801 caaccagatg tatgttaatc gtggacttgg cacttgcaaa gatggtctcg
1851 ttaagtataa ggtgaagggt tgcagaatga gcggtgatat ggataccgcc
1901 ctgggcaatt gtgttctcat ggtcctaatg acacgaaatt tgtgtttaga
1951 cctgtccatc ccccatgagt tgatggacaa tggtgacgat tgcatcgtca
2001 tctttgagaa ggaacatttg caaaggttta atgcagctgt caagccatac
2051 ttcgcagcgt tgggcttcac catgaaagta gaagcccctg tttaccaatt
2101 tgagaaagtc gaattttgcc aaacccagcc agtatttgat ggcacccaat
2151 ggagaatggt taggcaaatt cctagtatcg ctaaagacct atgtagcgta
2201 atcgattggg aacagctaga atcttggtgg cacgcgatag gaaactgcgg
2251 ccagagcttg gcgggaggat tgccagtgtt tggcagtttt taccgttggt
2301 tgtgtagaat tgggaaagct aatactaaag tgaccgagca tccactgtac
2351 aaatgcggca tggtcaacct ttcccgtggg atggatgcgc gagataagcc
2401 catcacaact gagggacgcc ttagtttcag cttggcgttt ggattgtcta
2451 ttccaatgca aatagcattg gagggtatat atgacaatct taagagacca
2501 ggtagggtag tcccgggggc ttgtgaaagg cgaggattta atgactggtt
2551 cataccagat gttcagtgcc ttaacccatc cagatctgca gtccacaccg
2601 acgaggttga ggtggaggtt gatttcctct accctcctcc cgtttccgcc
2651 tgttgaggca gtcacgtagc tagtaccagg ttgcaatact agagcgttag
2701 tcctggggcg tccctttggt ggagggccgt caaacctaga taactcagtc
2751 acccaatcct ccactaggct ctggaggttg ggcatcgtca tgaacctaca
2801 gatacaacca ataggcgatg gcaataattc aagcaggaac tcgagaagac
2851 ctaatcaacc ttctccacgg cgcagggatc caagacaagc ttcgggatct
2901 tggctttggt gtcctaacac cagcccgagg cagcaatacc cttacatgta
2951 cgccactata ccccccagag caccaacgaa cggtccggga tttctttacc
3001 cggaaatggc gcacgaagcg cagtgggggt ctcctgttta tagagaagct
3051 agtagtggca ttcctgccac acgtgcccga cggaaccgcg ggcgaggtag
3101 tgttgtggct ccacgatacg gccctgtcgg acctggaacc ggtaggccgc
3151 aaagtgtcac tgagcctcag cgggggaccg cggctggtcg ctttctatcc
3201 gaattactct attcctttga gcgattcggc agagagtgcc ccgcgatgtt
3251 tctccctagt gacccagctt caaggcatcc gcctgaagac tggctccagc
3301 gccttctccc tgctctcaat gtggaaccca gtcataggag agaaggccca
3351 acactaccaa gcaacagagc cggagtgtgt gcccatagta aggcactcga
3401 taaggagctc gttgcagaca ctggcactac agcggcagta tctgaacgcc
3451 gcgctgacga acccactagg aaggagccag aggggcagcc aatcactgag
3501 gcaccctcca ctggactatg ctctaagccc cacacgagag gcgagcagtg
3551 ttcagatccc accctccact tctagtgcca ccaaagccca ccaatacctt
3601 gagtaagcat tggtgcgtat ctgtactcac ggcacccggg ttgtagatag
3651 tttcccccgc gtagccagat cccatggatg gcggccatta acttgccctg
3701 cccatggtta aatagaagag tgttactagt tagatgacac cgggactaga
3751 ggccaaatcg ccctggaatg ggaaggaggc gagaccaatg gtacgccgtg
3801 gcttcagggg tgtggctggt taccacaccc ggtataactc tgagtccagt
3851 gagtggataa actagtagct agatgcgcct tgagcctcgt tgggattggc
3901 agcatcactc ttgatatgca tggtggagcc aaaactccag gtgaataacc
3951 caccagcacc aaacaaatcc tcccccccct tagtataggt ctcgatctta
4001 gagacaaaac cacacagtga tcagagatac tgtgtgggtg gttgaggagt
4051 cacagcccaa gctgtgcatt agccgtgcta ggctcgaccg caatgtcgta
4101 aacttgtccg ccttgagaac tggcagttac tgggatcggg catataatag
4151 gtaccagagc tctccatctg atttagcgct gtcgcggacg gcagcgcgcc
4201 c