Sequence of DPV Saguaro cactus virus
Saguaro cactus virus, complete genome.
ACC No: U72332
Dated: 2005-04-18 | Length: 3879 | CRC: 1638779116
!!NA_SEQUENCE 1.0 ID SCU72332 standard; genomic RNA; VRL; 3879 BP. XX AC U72332; XX SV U72332.1 XX DT 06-DEC-1996 (Rel. 50, Created) DT 18-APR-2005 (Rel. 83, Last updated, Version 5) XX DE Saguaro cactus virus, complete genome. XX KW . XX OS Saguaro cactus virus OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae; OC Carmovirus. XX RN [1] RP 1-3879 RA Xiong Z., Weng Z.; RT "Genome Organization and Gene Expression of Saguaro Cactus Carmovirus"; RL J. Gen. Virol. 0:0-0(1996). XX RN [2] RP 1-3879 RA Xiong Z., Weng Z.; RT ; RL Submitted (23-SEP-1996) to the EMBL/GenBank/DDBJ databases. RL Department of Plant Pathology, University of Arizona, Forbes 204, Tucson, RL AZ 85721, USA XX FH Key Location/Qualifiers FH FT source 1. .3879 FT /db_xref="taxon:52274" FT /mol_type="genomic RNA" FT /organism="Saguaro cactus virus" FT 5'UTR 1. .39 FT CDS 40. .2307 FT /codon_start=1 FT /db_xref="GOA:P89107" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:P89107" FT /evidence=EXPERIMENTAL FT /note="translation product of terminator readthrough at UAG FT terminator of SCVP26 ORF" FT /transl_except=(pos:751. .753,aa:OTHER) FT /gene="SCVP86" FT /function="RNA-dependent RNA polymerase" FT /product="SCVP86" FT /protein_id="AAB36710.1" FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW FT VLWGAPAQRGFTYHKXGGLSYLEGVCTKVWRGTHPNMIEVRRNALVRPRRLYYQQEIGT FT GLQYRVHNASYANLRRGLLERVFYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVG FT LHTRISAAQVVDCYQGRKRTVYHNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPA FT PRVIQPRSPRYNLQVARYLKKTEHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQF FT QKPVAIGFDMSRFDQHVSVPALQFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGL FT IRYKVDGCRMSGDMNTALGNCILACLITKHICRGLDARLINNGDDCVLICETRDVGRVV FT DKLTTAWLHFGFTCIAEEPVYEPEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVR FT WDTVKNAQQWFKAVGQCGLSIAGGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMS FT FNSNRAYSEISDAARFSFWKAFDILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWT FT FL" FT CDS 40. .753 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:P90337" FT /gene="SCVP26" FT /product="replication-related protein" FT /protein_id="AAB36707.1" FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW FT VLWGAPAQRGFTYHK" FT CDS 814. .2307 FT /codon_start=1 FT /db_xref="GOA:P90338" FT /db_xref="InterPro:IPR002166" FT /db_xref="InterPro:IPR007094" FT /db_xref="InterPro:IPR007095" FT /db_xref="UniProt/TrEMBL:P90338" FT /evidence=NOT_EXPERIMENTAL FT /note="theoretical protein that may be translated by FT initiation at an AUG codon downstream of the SCVP26 FT terminator" FT /gene="SCVP57" FT /product="SCVP57" FT /protein_id="AAB36708.1" FT /translation="MIEVRRNALVRPRRLYYQQEIGTGLQYRVHNASYANLRRGLLERV FT FYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVGLHTRISAAQVVDCYQGRKRTVY FT HNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPAPRVIQPRSPRYNLQVARYLKKT FT EHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQFQKPVAIGFDMSRFDQHVSVPAL FT QFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGLIRYKVDGCRMSGDMNTALGNCI FT LACLITKHICRGLDARLINNGDDCVLICETRDVGRVVDKLTTAWLHFGFTCIAEEPVYE FT PEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVRWDTVKNAQQWFKAVGQCGLSIA FT GGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMSFNSNRAYSEISDAARFSFWKAF FT DILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWTFL" FT CDS 1460. .1621 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:P89108" FT /evidence=NOT_EXPERIMENTAL FT /product="unknown1" FT /gene="SCVP57" FT /protein_id="AAB36712.1" FT /translation="MFLCPRYNLSTLSIRXYSKATVSSNNYYHGSCAIMVLDLPMTGLS FT GIRLTAVE" FT misc_RNA 2266. .3879 FT /evidence=EXPERIMENTAL FT /note="sg1; for gene expression of SCVP6 and SCVP9 ORFs" FT /product="large subgenomic RNA" FT CDS 2292. .2471 FT /codon_start=1 FT /db_xref="GOA:P89109" FT /db_xref="InterPro:IPR007982" FT /db_xref="UniProt/TrEMBL:P89109" FT /evidence=EXPERIMENTAL FT /gene="SCVP6" FT /product="SCVP6" FT /protein_id="AAB36709.1" FT /translation="MDVPVDTELMVKPAGKRGKTKAKVDIAKDAVRKQAPSTTNGGNWV FT VVADKVEVHIAFNF" FT CDS 2377. .2631 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:P89110" FT /evidence=EXPERIMENTAL FT /gene="SCVP9" FT /product="SCVP9" FT /protein_id="AAB36711.1" FT /translation="MLCGNKHLALLMGVIGLLLLIRWRFILPSTFSLPPLVTLEQIIVL FT SFCGLLISCACKADTTLVWHYSDNNSKNQHITISTPNGR" FT misc_RNA 2483. .3879 FT /evidence=EXPERIMENTAL FT /note="sg2; for gene expression of SCVCP ORF" FT /product="small subgenomic RNA" FT CDS 2621. .3655 FT /codon_start=1 FT /db_xref="GOA:P89111" FT /db_xref="HSSP:2TBV" FT /db_xref="InterPro:IPR000937" FT /db_xref="UniProt/TrEMBL:P89111" FT /gene="SCVCP" FT /product="capsid protein" FT /protein_id="AAB36706.1" FT /translation="MDAKYGKDPRLAAAAATGAAWAVRFLNRGWASLSPKQKRTARSVL FT GLQNQPDVIVPVRPRATARVARPTRQGPGLAGKSMTITKCEYLSDIVSHVGTIPLTDHW FT VVNPGTIKTFPQTSLMASQFNKYRLTALRVRYTSTCSFETSGRVAIAFTNDSNDPLPTT FT KSQLYNFPVHIEAAATESKVLTIPCDNVYRFVRDDGVSDPKLVDFGRIVVCTYGSSAAD FT PATLGELFIEYTIVFSDPTYTSSLTQQGENQRSIGPRYATVDYESTRWECQLQAAGRWL FT VCWVSDSAIPSPSIVGVGAKGKVLTSSDSKCGIATVIAQAPYCSIVSTTVSAPSSLTWF FT VARL" FT CDS 2634. .2861 FT /codon_start=1 FT /db_xref="UniProt/TrEMBL:P89112" FT /evidence=NOT_EXPERIMENTAL FT /product="unknown2" FT /gene="SCVCP" FT /protein_id="AAB36713.1" FT /translation="MGRIRAWLLLLLLVQLGQCVFLIGVGLRSPRNRSAPLDLCWGCRI FT SLMLSCLYDLVLLLVSPGPLGRVPGLRGNP" FT 3'UTR 3656. .3879 XX SQ Sequence 3879 BP; 898 A; 916 C; 1080 G; 980 T; 5 other; U72332 Length: 3879 May 10, 2005 10:09 Type: N Check: 6585 .. 1 gggtaagctg ctgaatgctt atctctggtt gctctcacca tgggaatcct 51 aagtgaactg ctcgttggaa ccaccttaac aggtgggtta gttgcagtgg 101 ggctggcagg cctgcaattg cgcattgccc taaagactgt ggaagtttcc 151 gttgacctgg tgcgggacgc gtatgaattt gtagttgacc acacaaaaac 201 gcgcccgcca ctgccggtaa gagagcatgt cctcagcata acacgtgagg 251 acgatcccgc tccagagctc gaattagctg actgcctcga gaagatcgag 301 gacaaggaga cggatgagga gggcaagaca aaggtggtgc gcactcgcac 351 caccaaccgt catgcccgtg gctcgttttt gcgccggttg attgcggagg 401 ctaagtgcca ctttggtggc acgcctaccg ctacccgcgc caacgagctt 451 gctgccatga agttcttggt tggcaagtgc cgagatcacc atctggttgt 501 gctgcacaca aaggaagtat gtcatgcagc gatggttggt ctcttcaccc 551 ccgatgatga tgagatagca gcaatggctc aactcaatag ccacgctgct 601 tatgttgctc gggtgaagct ccattctgcg gttactgttg acccttggtg 651 ggtcaagata ttgaggagtg gagaacgcac tgctggctgg cagcagttgt 701 ggtgggtgtt atggggagcc cctgctcaac ggggcttcac ctaccacaaa 751 taggggggcc tatcttacct cgagggtgtg tgtacaaaag tttggagggg 801 gacacaccct aacatgatcg aggtcagaag gaacgccctc gtgagaccta 851 ggagacttta ctaccagcaa gagattggca ctggattgca gtatcgtgtg 901 cacaacgcta gttatgccaa tctcagacgg ggtttgctgg aaagggtctt 951 ctacgtggaa gataaggtca acaaaaccct ggttccgtgt cccgaacccg 1001 accgcaatgc attcaaggaa ttggcatatt taaagcggcg gcttgtgcgt 1051 atcgttgggc tgcatacccg gatctccgct gcgcaagtgg tggattgtta 1101 tcagggcagg aagcgcaccg tgtatcacaa tgctcgctta tctcttgatg 1151 aaattcctct tgaycgtcgg gattcccatc ttcgcacttt yacgaaggcg 1201 gagaartttt gtgttgattt raaaccggac cctgcaccac gtgtcattca 1251 gccccgatct cctcgttata atttgcaagt tgctcgttac ctcaagaaga 1301 ctgagcacca catttacagg ggattggata agatttgggg gggtccgtgt 1351 gttatgaaag ggtataatgt cgaggaagtc gccagtcaca tcatcggtgc 1401 gtgggaacaa ttccagaagc ctgttgctat tggttttgac atgagcagat 1451 ttgaccaaca tgtttctgtg cccgcgctac aatttgagca ctctatctat 1501 caggcratat tcaaaggcga ccgtgagctc caacaattat tatcatggca 1551 gttgcgcaat tatggtactg gatttgccca tgacgggctt atccggtata 1601 aggttgacgg ctgtagaatg agcggcgata tgaacactgc cttaggaaat 1651 tgcatcttag cctgccttat caccaagcac atttgccgtg ggttagacgc 1701 gagacttatc aacaatggtg acgattgtgt tctcatatgc gaaactcgtg 1751 acgtggggcg tgtcgtggat aagttaacga cagcgtggct ccactttggt 1801 tttacatgta tcgcagagga accagtctat gaaccagaga agattaggtt 1851 ttgtcagatg gcccctgtat atgatggtga gaagtgggtg atggtgcgag 1901 atccgaaggt cagcctaagt aaggacgctt tttctatggt tcgttgggat 1951 acagtgaaga atgcacaaca atggtttaaa gctgtggggc agtgcggtct 2001 atctatagcc ggaggggtgc ctattgtgca ggagttctac aggatgtacg 2051 agcgcgcggg aggtcatgtc aaactcccag tgttgaaaga ggttagcgct 2101 agtgggttgt ttcatatgag tttcaattcc aaccgggcct attctgagat 2151 ttccgatgct gccagattta gcttttggaa agccttcgac atcttaccag 2201 atgttcagga ggccaccgaa gctgaactgc gtcgcacctg gattagtctc 2251 gattttggcc cggctggtga ccttaacaac cctatcctag aatggacgtt 2301 cctgtagaca ctgaactgat ggtgaaacca gccgggaaga gggggaaaac 2351 aaaagctaaa gtggacatag ccaaggatgc tgtgcggaaa caagcaccta 2401 gcactactaa tgggggtaat tgggttgttg ttgctgataa ggtggaggtt 2451 catattgcct tcaactttta gtttgccccc actggtaacg ctagaacaaa 2501 tcatcgtact tagcttttgt ggtctcttaa tttcctgcgc ttgtaaggca 2551 gatacaacgc tggtttggca ctattccgac aacaattcaa agaatcaaca 2601 catcacaatc tccacaccta atggacgcta agtatgggaa ggatccgcgc 2651 ctggctgctg ctgctgctac tggtgcagct tgggcagtgc gttttcttaa 2701 taggggttgg gcttcgctct ccccgaaaca gaagcgcacc gctcgatctg 2751 tgctggggtt gcagaatcag cctgatgtta tcgtgcctgt acgacctcgt 2801 gctactgctc gtgtcgccag gcccactagg cagggtcccg ggcttgcggg 2851 gaaatccatg acaattacca agtgcgaata cctttctgac attgtctctc 2901 acgtgggtac tattccacta accgaccatt gggtggtcaa tcctggcacc 2951 attaagactt ttccccagac tagcctcatg gcttcgcagt tcaacaagta 3001 taggttgact gccctgaggg tgcgctatac tagcacctgt agctttgaga 3051 cgtctgggcg tgtggcaatc gcgttcacta acgatagtaa tgatccactg 3101 cccaccacca agtcgcagct gtacaacttc cctgtacata tcgaggcagc 3151 tgcgaccgag tctaaggtgc tgaccatccc gtgcgataac gtttatcggt 3201 ttgtgaggga cgatggggta tccgatccta aactcgtgga tttcggaaga 3251 attgtagtgt gcacgtatgg atcgagcgct gcggacccag cgactctagg 3301 cgaactcttt attgagtaca cgatcgtctt ctctgatcca acctacactt 3351 cttctctcac acagcaaggt gagaatcagc gcagtattgg tccacgctac 3401 gccacagtag actacgagtc cacccgctgg gagtgtcaac tacaagcagc 3451 tggtcgatgg ttggtctgct gggtaagtga tagcgccatc ccttcccctt 3501 cgatcgtggg ggtaggagct aagggtaagg tgctaacgag ttctgactca 3551 aagtgcggga ttgcaaccgt tattgctcaa gctccgtact gttccattgt 3601 ttctactact gtatcggccc cgtcaagctt gacgtggttt gttgctcgac 3651 tgtgagggga cctacccact gtgctgccac acaggaactt ccaaccttcg 3701 ggtggcgagg tagggcagaa gagtgactga acgaggatgg tgtagagcaa 3751 tggatggggg gggagtccat ggtgggctcc ggcgcgacga tgctaaaatc 3801 tccatatcat gtgtggagtg ggctgcttag tcgcttatta gttgaaaatt 3851 aggggggtcc ttagggacct ctcccgccc