Sequence of DPV Saguaro cactus virus
Saguaro cactus virus, complete genome.
ACC No: U72332
Dated: 2005-04-18 | Length: 3879 | CRC: 1638779116
!!NA_SEQUENCE 1.0
ID SCU72332 standard; genomic RNA; VRL; 3879 BP.
XX
AC U72332;
XX
SV U72332.1
XX
DT 06-DEC-1996 (Rel. 50, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Saguaro cactus virus, complete genome.
XX
KW .
XX
OS Saguaro cactus virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-3879
RA Xiong Z., Weng Z.;
RT "Genome Organization and Gene Expression of Saguaro Cactus Carmovirus";
RL J. Gen. Virol. 0:0-0(1996).
XX
RN [2]
RP 1-3879
RA Xiong Z., Weng Z.;
RT ;
RL Submitted (23-SEP-1996) to the EMBL/GenBank/DDBJ databases.
RL Department of Plant Pathology, University of Arizona, Forbes 204, Tucson,
RL AZ 85721, USA
XX
FH Key Location/Qualifiers
FH
FT source 1. .3879
FT /db_xref="taxon:52274"
FT /mol_type="genomic RNA"
FT /organism="Saguaro cactus virus"
FT 5'UTR 1. .39
FT CDS 40. .2307
FT /codon_start=1
FT /db_xref="GOA:P89107"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:P89107"
FT /evidence=EXPERIMENTAL
FT /note="translation product of terminator readthrough at UAG
FT terminator of SCVP26 ORF"
FT /transl_except=(pos:751. .753,aa:OTHER)
FT /gene="SCVP86"
FT /function="RNA-dependent RNA polymerase"
FT /product="SCVP86"
FT /protein_id="AAB36710.1"
FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY
FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT
FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA
FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW
FT VLWGAPAQRGFTYHKXGGLSYLEGVCTKVWRGTHPNMIEVRRNALVRPRRLYYQQEIGT
FT GLQYRVHNASYANLRRGLLERVFYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVG
FT LHTRISAAQVVDCYQGRKRTVYHNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPA
FT PRVIQPRSPRYNLQVARYLKKTEHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQF
FT QKPVAIGFDMSRFDQHVSVPALQFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGL
FT IRYKVDGCRMSGDMNTALGNCILACLITKHICRGLDARLINNGDDCVLICETRDVGRVV
FT DKLTTAWLHFGFTCIAEEPVYEPEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVR
FT WDTVKNAQQWFKAVGQCGLSIAGGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMS
FT FNSNRAYSEISDAARFSFWKAFDILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWT
FT FL"
FT CDS 40. .753
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:P90337"
FT /gene="SCVP26"
FT /product="replication-related protein"
FT /protein_id="AAB36707.1"
FT /translation="MGILSELLVGTTLTGGLVAVGLAGLQLRIALKTVEVSVDLVRDAY
FT EFVVDHTKTRPPLPVREHVLSITREDDPAPELELADCLEKIEDKETDEEGKTKVVRTRT
FT TNRHARGSFLRRLIAEAKCHFGGTPTATRANELAAMKFLVGKCRDHHLVVLHTKEVCHA
FT AMVGLFTPDDDEIAAMAQLNSHAAYVARVKLHSAVTVDPWWVKILRSGERTAGWQQLWW
FT VLWGAPAQRGFTYHK"
FT CDS 814. .2307
FT /codon_start=1
FT /db_xref="GOA:P90338"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:P90338"
FT /evidence=NOT_EXPERIMENTAL
FT /note="theoretical protein that may be translated by
FT initiation at an AUG codon downstream of the SCVP26
FT terminator"
FT /gene="SCVP57"
FT /product="SCVP57"
FT /protein_id="AAB36708.1"
FT /translation="MIEVRRNALVRPRRLYYQQEIGTGLQYRVHNASYANLRRGLLERV
FT FYVEDKVNKTLVPCPEPDRNAFKELAYLKRRLVRIVGLHTRISAAQVVDCYQGRKRTVY
FT HNARLSLDEIPLDRRDSHLRTFTKAEKFCVDLKPDPAPRVIQPRSPRYNLQVARYLKKT
FT EHHIYRGLDKIWGGPCVMKGYNVEEVASHIIGAWEQFQKPVAIGFDMSRFDQHVSVPAL
FT QFEHSIYQAIFKGDRELQQLLSWQLRNYGTGFAHDGLIRYKVDGCRMSGDMNTALGNCI
FT LACLITKHICRGLDARLINNGDDCVLICETRDVGRVVDKLTTAWLHFGFTCIAEEPVYE
FT PEKIRFCQMAPVYDGEKWVMVRDPKVSLSKDAFSMVRWDTVKNAQQWFKAVGQCGLSIA
FT GGVPIVQEFYRMYERAGGHVKLPVLKEVSASGLFHMSFNSNRAYSEISDAARFSFWKAF
FT DILPDVQEATEAELRRTWISLDFGPAGDLNNPILEWTFL"
FT CDS 1460. .1621
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:P89108"
FT /evidence=NOT_EXPERIMENTAL
FT /product="unknown1"
FT /gene="SCVP57"
FT /protein_id="AAB36712.1"
FT /translation="MFLCPRYNLSTLSIRXYSKATVSSNNYYHGSCAIMVLDLPMTGLS
FT GIRLTAVE"
FT misc_RNA 2266. .3879
FT /evidence=EXPERIMENTAL
FT /note="sg1; for gene expression of SCVP6 and SCVP9 ORFs"
FT /product="large subgenomic RNA"
FT CDS 2292. .2471
FT /codon_start=1
FT /db_xref="GOA:P89109"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:P89109"
FT /evidence=EXPERIMENTAL
FT /gene="SCVP6"
FT /product="SCVP6"
FT /protein_id="AAB36709.1"
FT /translation="MDVPVDTELMVKPAGKRGKTKAKVDIAKDAVRKQAPSTTNGGNWV
FT VVADKVEVHIAFNF"
FT CDS 2377. .2631
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:P89110"
FT /evidence=EXPERIMENTAL
FT /gene="SCVP9"
FT /product="SCVP9"
FT /protein_id="AAB36711.1"
FT /translation="MLCGNKHLALLMGVIGLLLLIRWRFILPSTFSLPPLVTLEQIIVL
FT SFCGLLISCACKADTTLVWHYSDNNSKNQHITISTPNGR"
FT misc_RNA 2483. .3879
FT /evidence=EXPERIMENTAL
FT /note="sg2; for gene expression of SCVCP ORF"
FT /product="small subgenomic RNA"
FT CDS 2621. .3655
FT /codon_start=1
FT /db_xref="GOA:P89111"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:P89111"
FT /gene="SCVCP"
FT /product="capsid protein"
FT /protein_id="AAB36706.1"
FT /translation="MDAKYGKDPRLAAAAATGAAWAVRFLNRGWASLSPKQKRTARSVL
FT GLQNQPDVIVPVRPRATARVARPTRQGPGLAGKSMTITKCEYLSDIVSHVGTIPLTDHW
FT VVNPGTIKTFPQTSLMASQFNKYRLTALRVRYTSTCSFETSGRVAIAFTNDSNDPLPTT
FT KSQLYNFPVHIEAAATESKVLTIPCDNVYRFVRDDGVSDPKLVDFGRIVVCTYGSSAAD
FT PATLGELFIEYTIVFSDPTYTSSLTQQGENQRSIGPRYATVDYESTRWECQLQAAGRWL
FT VCWVSDSAIPSPSIVGVGAKGKVLTSSDSKCGIATVIAQAPYCSIVSTTVSAPSSLTWF
FT VARL"
FT CDS 2634. .2861
FT /codon_start=1
FT /db_xref="UniProt/TrEMBL:P89112"
FT /evidence=NOT_EXPERIMENTAL
FT /product="unknown2"
FT /gene="SCVCP"
FT /protein_id="AAB36713.1"
FT /translation="MGRIRAWLLLLLLVQLGQCVFLIGVGLRSPRNRSAPLDLCWGCRI
FT SLMLSCLYDLVLLLVSPGPLGRVPGLRGNP"
FT 3'UTR 3656. .3879
XX
SQ Sequence 3879 BP; 898 A; 916 C; 1080 G; 980 T; 5 other;
U72332 Length: 3879 May 10, 2005 10:09 Type: N Check: 6585 ..
1 gggtaagctg ctgaatgctt atctctggtt gctctcacca tgggaatcct
51 aagtgaactg ctcgttggaa ccaccttaac aggtgggtta gttgcagtgg
101 ggctggcagg cctgcaattg cgcattgccc taaagactgt ggaagtttcc
151 gttgacctgg tgcgggacgc gtatgaattt gtagttgacc acacaaaaac
201 gcgcccgcca ctgccggtaa gagagcatgt cctcagcata acacgtgagg
251 acgatcccgc tccagagctc gaattagctg actgcctcga gaagatcgag
301 gacaaggaga cggatgagga gggcaagaca aaggtggtgc gcactcgcac
351 caccaaccgt catgcccgtg gctcgttttt gcgccggttg attgcggagg
401 ctaagtgcca ctttggtggc acgcctaccg ctacccgcgc caacgagctt
451 gctgccatga agttcttggt tggcaagtgc cgagatcacc atctggttgt
501 gctgcacaca aaggaagtat gtcatgcagc gatggttggt ctcttcaccc
551 ccgatgatga tgagatagca gcaatggctc aactcaatag ccacgctgct
601 tatgttgctc gggtgaagct ccattctgcg gttactgttg acccttggtg
651 ggtcaagata ttgaggagtg gagaacgcac tgctggctgg cagcagttgt
701 ggtgggtgtt atggggagcc cctgctcaac ggggcttcac ctaccacaaa
751 taggggggcc tatcttacct cgagggtgtg tgtacaaaag tttggagggg
801 gacacaccct aacatgatcg aggtcagaag gaacgccctc gtgagaccta
851 ggagacttta ctaccagcaa gagattggca ctggattgca gtatcgtgtg
901 cacaacgcta gttatgccaa tctcagacgg ggtttgctgg aaagggtctt
951 ctacgtggaa gataaggtca acaaaaccct ggttccgtgt cccgaacccg
1001 accgcaatgc attcaaggaa ttggcatatt taaagcggcg gcttgtgcgt
1051 atcgttgggc tgcatacccg gatctccgct gcgcaagtgg tggattgtta
1101 tcagggcagg aagcgcaccg tgtatcacaa tgctcgctta tctcttgatg
1151 aaattcctct tgaycgtcgg gattcccatc ttcgcacttt yacgaaggcg
1201 gagaartttt gtgttgattt raaaccggac cctgcaccac gtgtcattca
1251 gccccgatct cctcgttata atttgcaagt tgctcgttac ctcaagaaga
1301 ctgagcacca catttacagg ggattggata agatttgggg gggtccgtgt
1351 gttatgaaag ggtataatgt cgaggaagtc gccagtcaca tcatcggtgc
1401 gtgggaacaa ttccagaagc ctgttgctat tggttttgac atgagcagat
1451 ttgaccaaca tgtttctgtg cccgcgctac aatttgagca ctctatctat
1501 caggcratat tcaaaggcga ccgtgagctc caacaattat tatcatggca
1551 gttgcgcaat tatggtactg gatttgccca tgacgggctt atccggtata
1601 aggttgacgg ctgtagaatg agcggcgata tgaacactgc cttaggaaat
1651 tgcatcttag cctgccttat caccaagcac atttgccgtg ggttagacgc
1701 gagacttatc aacaatggtg acgattgtgt tctcatatgc gaaactcgtg
1751 acgtggggcg tgtcgtggat aagttaacga cagcgtggct ccactttggt
1801 tttacatgta tcgcagagga accagtctat gaaccagaga agattaggtt
1851 ttgtcagatg gcccctgtat atgatggtga gaagtgggtg atggtgcgag
1901 atccgaaggt cagcctaagt aaggacgctt tttctatggt tcgttgggat
1951 acagtgaaga atgcacaaca atggtttaaa gctgtggggc agtgcggtct
2001 atctatagcc ggaggggtgc ctattgtgca ggagttctac aggatgtacg
2051 agcgcgcggg aggtcatgtc aaactcccag tgttgaaaga ggttagcgct
2101 agtgggttgt ttcatatgag tttcaattcc aaccgggcct attctgagat
2151 ttccgatgct gccagattta gcttttggaa agccttcgac atcttaccag
2201 atgttcagga ggccaccgaa gctgaactgc gtcgcacctg gattagtctc
2251 gattttggcc cggctggtga ccttaacaac cctatcctag aatggacgtt
2301 cctgtagaca ctgaactgat ggtgaaacca gccgggaaga gggggaaaac
2351 aaaagctaaa gtggacatag ccaaggatgc tgtgcggaaa caagcaccta
2401 gcactactaa tgggggtaat tgggttgttg ttgctgataa ggtggaggtt
2451 catattgcct tcaactttta gtttgccccc actggtaacg ctagaacaaa
2501 tcatcgtact tagcttttgt ggtctcttaa tttcctgcgc ttgtaaggca
2551 gatacaacgc tggtttggca ctattccgac aacaattcaa agaatcaaca
2601 catcacaatc tccacaccta atggacgcta agtatgggaa ggatccgcgc
2651 ctggctgctg ctgctgctac tggtgcagct tgggcagtgc gttttcttaa
2701 taggggttgg gcttcgctct ccccgaaaca gaagcgcacc gctcgatctg
2751 tgctggggtt gcagaatcag cctgatgtta tcgtgcctgt acgacctcgt
2801 gctactgctc gtgtcgccag gcccactagg cagggtcccg ggcttgcggg
2851 gaaatccatg acaattacca agtgcgaata cctttctgac attgtctctc
2901 acgtgggtac tattccacta accgaccatt gggtggtcaa tcctggcacc
2951 attaagactt ttccccagac tagcctcatg gcttcgcagt tcaacaagta
3001 taggttgact gccctgaggg tgcgctatac tagcacctgt agctttgaga
3051 cgtctgggcg tgtggcaatc gcgttcacta acgatagtaa tgatccactg
3101 cccaccacca agtcgcagct gtacaacttc cctgtacata tcgaggcagc
3151 tgcgaccgag tctaaggtgc tgaccatccc gtgcgataac gtttatcggt
3201 ttgtgaggga cgatggggta tccgatccta aactcgtgga tttcggaaga
3251 attgtagtgt gcacgtatgg atcgagcgct gcggacccag cgactctagg
3301 cgaactcttt attgagtaca cgatcgtctt ctctgatcca acctacactt
3351 cttctctcac acagcaaggt gagaatcagc gcagtattgg tccacgctac
3401 gccacagtag actacgagtc cacccgctgg gagtgtcaac tacaagcagc
3451 tggtcgatgg ttggtctgct gggtaagtga tagcgccatc ccttcccctt
3501 cgatcgtggg ggtaggagct aagggtaagg tgctaacgag ttctgactca
3551 aagtgcggga ttgcaaccgt tattgctcaa gctccgtact gttccattgt
3601 ttctactact gtatcggccc cgtcaagctt gacgtggttt gttgctcgac
3651 tgtgagggga cctacccact gtgctgccac acaggaactt ccaaccttcg
3701 ggtggcgagg tagggcagaa gagtgactga acgaggatgg tgtagagcaa
3751 tggatggggg gggagtccat ggtgggctcc ggcgcgacga tgctaaaatc
3801 tccatatcat gtgtggagtg ggctgcttag tcgcttatta gttgaaaatt
3851 aggggggtcc ttagggacct ctcccgccc