Sequence of DPV Carnation mottle virus
Carnation mottle virus (CarMV) complete genomic RNA sequence
ACC No: X02986
Dated: 2005-04-18 | Length: 4003 | CRC: 680033538
!!NA_SEQUENCE 1.0
ID XXCARMV standard; genomic RNA; VRL; 4003 BP.
XX
AC X02986;
XX
SV X02986.1
XX
DT 28-JAN-1986 (Rel. 08, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 7)
XX
DE Carnation mottle virus (CarMV) complete genomic RNA sequence
XX
KW coat protein; genome.
XX
OS Carnation mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RP 1-4003
RX MEDLINE; 86041863.
RX PUBMED; 3840587.
RA Guilley H., Carrington J.C., Balazs E., Jonard G., Richards K.,
RA Morris T.J.;
RT "Nucleotide sequence and genome organization of carnation mottle virus
RT RNA";
RL Nucleic Acids Res. 13(18):6663-6677(1985).
XX
CC Parts of the sequence near the 5' end (bp 22-60, 237-332, 336-357)
CC were characterized both with cloned cDNA and by direct sequence
CC analysis of primer elongated cDNA.
CC To produce the in vitro translation product p77-80 the
CC UAG-stop codon (pos. 805-807) has to be read through.
XX
CC Data kindly reviewed (03-MAR-1986) by K. Richards
XX
FH Key Location/Qualifiers
FH
FT source 1. .4003
FT /db_xref="taxon:11986"
FT /mol_type="genomic RNA"
FT /organism="Carnation mottle virus"
FT CDS 70. .2679
FT /db_xref="GOA:Q9WJD9"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9WJD9"
FT /note="pot. unidentified reading frame"
FT /note="putative readthrough stop-codon"
FT /transl_except=(pos:805. .807,aa:OTHER)
FT /transl_except=(pos:2359. .2361,aa:OTHER)
FT /protein_id="CAB38330.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLVVQSPYGNPNQGLIRGEDEEIDNVEESTPVELTPLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGIKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPLKERKL
FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR
FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN
FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW
FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG
FT FASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD
FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS
FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVRENKNITEKSSS
FT GFFMMADRAKRGYSAVSEVCRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAAD
FT SLWILNRKYQXLESKCSLGIEENKRHVDRWPRMPSANLHLIVLTGVIGLMLLIRLRCTF
FT TSTFSLPPLVTLNQIIALSFCGLLLNSISRAERACYYNYSVDSSKQQHISISTPNGK"
FT CDS 70. .2361
FT /db_xref="GOA:Q9WJE0"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9WJE0"
FT /note="putative readthrough stop-codon"
FT /transl_except=(pos:805. .807,aa:OTHER)
FT /product="put. p77-80 protein (aa 1-763)"
FT /protein_id="CAB38331.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLVVQSPYGNPNQGLIRGEDEEIDNVEESTPVELTPLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGIKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPKXGGLFYLNGVETKIRRGGHPSVIEVDGQCPLKERKL
FT YVQNAITTGYEYRVHNHSYANLRRGLLERVFYVERNKELVSCPQPEPGSFKEMGYLRRR
FT FHRVCGNHTRISANDLVDCYQGRKRTIYENAAASLLDRAIERKDGDLKTFIKAEKFNVN
FT LKSDPAPRVIQPRSPRYNVELGRYLKKYEHHAYKALDKIWGGPTVMKGYTTEEVAQHIW
FT SAWNQFQTPVAIGFDMSRFDQHVSVAALEFEHSCYLACFEGDAHLANLLKMQLVNHGVG
FT FASNGMLRYTKEGCRMSGDMNTALGNCLLACLITKHLMKIRSRLINNGDDCVLICERTD
FT IDYVVSNLTTGWSRFGFNCIAEEPVYEMEKIRFCQMAPVFDGAGWLMVRDPLVSMSKDS
FT HSLVHWNNETNAKQWLKSVGMCGLRIAGGVPVVQEFYQKYVETAGNVRENKNITEKSSS
FT GFFMMADRAKRGYSAVSEVCRFSFYQAFGITPDQQIALEGEIRSLTINTNVGPQCEAAD
FT SLWILNRKYQ"
FT CDS 70. .807
FT /db_xref="GOA:P04518"
FT /db_xref="UniProt/Swiss-Prot:P04518"
FT /note="put. p30-34 protein (aa 1-245)"
FT /protein_id="CAA26726.1"
FT /translation="MGLPSLLVEGVIGCTLVGGLVAVGSAALAVRATIGVVEFNRECVR
FT GARRIVSSGGRCLVVQSPYGNPNQGLIRGEDEEIDNVEESTPVELTPLIEVKAEVDGKE
FT VVVSKKRVVNRHLRQRFVRSIAIEAKNHFGGDISPSKANYLSVSKFLTGKCKERHVVPA
FT HTRDCVSAAMVLVFTPDVHEIRMMAGLASDAAYGIKIAMASILNRKGWCWRLMVNPLDR
FT ARWWEMWCVVNGFDSNKPVTFPK"
FT CDS 2334. .2519
FT /db_xref="GOA:P11794"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/Swiss-Prot:P11794"
FT /note="unidentified reading frame"
FT /protein_id="CAA26727.1"
FT /translation="MDIESEVPVVGKQMLAGNRGKQKTRRSVAKDAIRKPASDSTNGGN
FT WVNVADKIEVHIHFNF"
FT CDS 2669. .3715
FT /db_xref="GOA:P04383"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="InterPro:IPR008975"
FT /db_xref="UniProt/Swiss-Prot:P04383"
FT /note="put. p38, coat protein (aa 1-348)"
FT /protein_id="CAA26728.1"
FT /translation="MENKGEKIAMNPTVQTLAQKGDKLAVKLVTRGWASLSTNQKRRAE
FT MLAGYTPAILAFTPRRPRMTNPPPRTSRNSPGQAGKSMTMSKTELLSTVKGTTGVIPSF
FT EDWVVSPRNVAVFPQLSLLATNFNKYRITALTVKYSPACSFETNGRVALGFNDDASDTP
FT PTTKVGFYDLGKHVETAAQTAKDLVIPVDGKTRFIRDSASDDAKLVDFGRIVLSTYGFD
FT KADTVVGELFIQYTIVLSDPTKTAKISQASNDKVSDGPTYVVPSVNGNELQLRVVAAGK
FT WCIIVRGTVEGGFTKPTLIGPGISGDVDYESARPIAVCELVTQMEGQILKITKTSAEQP
FT LQWVVYRM"
FT CDS complement(3178. .3519)
FT /db_xref="UniProt/TrEMBL:Q89271"
FT /note="unidentified reading frame"
FT /protein_id="CAA26729.1"
FT /translation="MHHFPAATTLSCSSLPLTEGTTYVGPSDTLSLLACEILAVLVGSL
FT STIVYCINNSPTTVSALSNPYVDKTIRPKSTSLASSLAESLMNRVLPSTGITRSLAVCA
FT AVSTCLPRS"
XX
SQ Sequence 4003 BP; 1127 A; 863 C; 1091 G; 922 T; 0 other;
X02986 Length: 4003 May 10, 2005 10:09 Type: N Check: 2529 ..
1 gggtaagctg gcgggcaaac ctacactcta tcttacatac attatatatt
51 ctaaccatct gctttcacta tgggattacc cagtctacta gtggaaggcg
101 ttattggatg cactctagtt ggtggtttgg tggctgttgg tagcgcagcg
151 ctggccgttc gggcgaccat cggtgtagtg gaattcaata gggagtgtgt
201 gcgcggggcg agaaggatcg tatctagcgg agggaggtgc ttagtagtcc
251 aatcccctta tggcaatcct aaccaaggat tgataagggg tgaagacgaa
301 gaaattgata acgtggagga gtcaactccg gtagagttga ctccgttgat
351 cgaggttaag gcggaagtgg atgggaaaga ggtggttgtc tctaagaagc
401 gcgtggtaaa caggcacttg agacaacgat tcgttcgctc catagccatc
451 gaagccaaaa accactttgg cggtgatatc agcccaagca aggccaatta
501 cctttctgtt tccaagtttc taacggggaa atgcaaggag aggcatgttg
551 tgcccgctca cacaagagac tgtgtgagcg ctgccatggt gctggtgttc
601 acccctgacg tccacgagat cagaatgatg gcaggattgg cgtctgacgc
651 agcgtacgga ataaagatcg cgatggcaag catactgaac aggaaagggt
701 ggtgttggag gctaatggta aatccattag atagggcaag atggtgggaa
751 atgtggtgcg ttgtgaacgg gtttgactcc aacaaacccg tcacctttcc
801 caaatagggg ggcctgttct acctcaatgg tgtggagacg aaaattcgtc
851 gtggaggcca cccatcagtg attgaggtag acgggcaatg tcctctaaaa
901 gagagaaaac tctacgtaca gaatgccata accactggtt atgaatacag
951 ggtccacaac cattcgtacg caaacctcag acgagggctc cttgagagag
1001 ttttctatgt tgagcgcaac aaggagctag tcagctgtcc gcaacctgaa
1051 cccggcagct ttaaagagat gggatacctg cgacgcaggt tccatagagt
1101 gtgtggcaat catacccgga tctctgccaa tgatttggta gattgttatc
1151 agggcaggaa acgcacaatt tatgagaatg cagcagcgtc cctacttgat
1201 agagctatcg aaaggaagga tggcgatctc aagaccttta ttaaggcaga
1251 gaaattcaac gtaaatctga aaagtgatcc tgctcctcgg gttatacagc
1301 ctaggagccc tcgctacaat gtggagttgg gccggtactt aaagaagtat
1351 gaacaccatg cttacaaagc cttagacaag atctggggag gaccaacagt
1401 catgaaagga tacactacag aggaggtagc acagcacatt tggagcgcat
1451 ggaatcaatt ccagacacct gtagccatag gatttgacat gtcaagattc
1501 gatcagcatg tgtctgtagc cgcgctcgag ttcgaacatt catgctattt
1551 ggcctgtttt gaaggggacg ctcatctcgc caacttgctt aagatgcaac
1601 tggtgaatca tggcgtgggt tttgcgagca atggaatgtt gcgatacaca
1651 aaggaagggt gcagaatgag cggtgacatg aacactgcct tgggcaactg
1701 cttgttagct tgccttatca ccaaacactt aatgaaaatc aggagcagac
1751 tgatcaacaa tggggatgac tgtgtgctta tttgcgaaag aacagacatc
1801 gactacgtcg tgagtaattt aacgacggga tggagtcgat ttggattcaa
1851 ttgcatagca gaagagccag tgtacgaaat ggaaaagatc agattctgcc
1901 agatggcacc ggtgtttgat ggagcaggct ggctgatggt cagggaccct
1951 ttggtgagca tgagcaagga ttctcactcc ttagtgcatt ggaacaacga
2001 aacgaatgca aaacaatggc tgaagtcagt aggaatgtgc ggtctgcgga
2051 ttgccggggg ggttccagtt gtgcaagagt tctaccaaaa atacgttgaa
2101 acagccggaa atgtgagaga gaacaaaaat atcacagaga agagtagttc
2151 tgggttcttt atgatggcgg atcgcgctaa gcggggctat tctgctgtgt
2201 ctgaggtgtg ccgatttagc ttctaccagg cattcggcat cacgccagac
2251 cagcagatcg cgttggaggg tgagatcagg tctctcacta tcaacaccaa
2301 cgtggggccc cagtgtgaag cggcagattc actatggata ttgaatcgga
2351 agtaccagta gttggaaagc aaatgctcgc tgggaataga ggaaaacaaa
2401 agacacgtag atcggtggcc aaggatgcca tccgcaaacc tgcatctgat
2451 agtactaacg ggggtaattg ggttaatgtt gctgataaga ttgaggtgca
2501 cattcacttc aacttttagt ttgcccccac tggtaacttt aaatcagata
2551 atagcgttgt cattttgtgg tcttctatta aacagcatct ctcgggcaga
2601 aagagcttgc tattacaact actctgttga tagttctaaa caacaacaca
2651 tttcaataag tacaccaaat ggaaaataaa ggagaaaaga tcgcgatgaa
2701 tcccactgtg caaacattgg cgcagaaggg ggacaagtta gccgtgaagt
2751 tggtgacaag agggtgggcc tctctgagta cgaaccagaa gaggagagct
2801 gaaatgcttg ctggatacac tccagcgatc ctagccttca caccccgacg
2851 accacggatg acgaaccctc ctccaagaac cagtaggaat tcaccaggac
2901 aagctggaaa gtccatgacg atgagtaaga ccgaactatt aagcaccgtc
2951 aaaggtacca cgggtgttat cccaagcttt gaagactggg tcgtttcccc
3001 ccgaaacgta gccgtcttcc ctcaactctc gctgctggcg acgaacttca
3051 acaagtaccg cattactgcg ctcactgtga agtactcacc cgcgtgcagc
3101 ttcgagacca atgggagggt ggctctggga ttcaacgatg acgcttcgga
3151 cacaccacca accaccaagg ttggatttta cgatctgggc aaacatgtgg
3201 aaactgctgc acagacagct aaggatctag tgataccagt agacggcaaa
3251 acccggttca tcagggactc ggctagtgat gatgccaaac tagtcgattt
3301 tggacgaata gtcttgtcaa catacgggtt tgacaaggct gacactgtgg
3351 tgggcgaatt gtttatacag tacacgattg tgctgagtga cccaaccaag
3401 acggccaaaa tttcacaggc aagcaacgat aaggtgtcgg acggaccaac
3451 gtatgtggtc ccttcggtta atggcaacga gctacaacta agagtggtag
3501 ccgctgggaa atggtgcatt atagtgcggg gtacggttga gggaggcttc
3551 accaaaccca cacttattgg gccgggaatc agcggtgatg tggactatga
3601 aagtgccaga cctatcgccg tttgtgaatt ggtgacacaa atggagggcc
3651 agatattgaa aatcaccaag acctcagcag aacaaccact ccaatgggtt
3701 gtttatagga tgtgaatgca atagaaaagt ttgttagaca cacacggcgg
3751 gacgtgttgc cggagctgcc actccgccca agatggatcg atattaacca
3801 tctttggcaa cagcgtgcgt ggctaatcga acctagtaat tgcatagcat
3851 ccgactgtaa cctgttctct gctgaatacg agggtggcct cgtgatccca
3901 aaccataaaa gaaaccaact tgttggtgga agggcttgga agtaggatca
3951 accactgttt attaattagg ggtgagagta ttcactgtac tctttccccg
4001 ccc