Sequence of DPV Maize chlorotic mottle virus
Maize chlorotic mottle virus genomic RNA
ACC No: X14736
Dated: 2004-09-09 | Length: 4437 | CRC: 1234692626
!!NA_SEQUENCE 1.0
ID MCMVXX standard; genomic RNA; VRL; 4437 BP.
XX
AC X14736;
XX
SV X14736.2
XX
DT 06-JUL-1989 (Rel. 20, Created)
DT 09-SEP-2004 (Rel. 81, Last updated, Version 8)
XX
DE Maize chlorotic mottle virus genomic RNA
XX
KW coat protein; genome; replicase; subgenomic RNA.
XX
OS Maize chlorotic mottle virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Machlomovirus.
XX
RN [1]
RC Revised by [3]
RA Nutter R.C.;
RT ;
RL Submitted (17-MAR-1989) to the EMBL/GenBank/DDBJ databases.
RL Nutter R.C., Oklahoma State University, Room 110 Noble Research Centre,
RL Stillwater OK 74078-9947, U S A.
XX
RN [2]
RP 1-4437
RX MEDLINE; 89263725.
RX PUBMED; 2726455.
RA Nutter R.C., Scheets K., Panganiban L.C., Lommel S.A.;
RT "The complete nucleotide sequence of the maize chlorotic mottle virus
RT genome";
RL Nucleic Acids Res. 17(8):3163-3177(1989).
XX
RN [3]
RP 1-4437
RA Scheets K.;
RT ;
RL Submitted (01-SEP-1999) to the EMBL/GenBank/DDBJ databases.
RL Scheets K., Microbiology and Molecular Genetics, Oklahoma State University,
RL Stillwater OK 74078-3020, U S A.
XX
RN [4]
RX DOI; 10.1006/viro.1999.0107.
RX MEDLINE; 20115971.
RX PUBMED; 10648186.
RA Scheets K.;
RT "Maize chlorotic mottle machlomovirus expresses its coat protein from a
RT 1.47-kb subgenomic RNA and makes a 0.34-kb subgenomic RNA.";
RL Virology 267(1):90-101(2000).
XX
CC Data kindly reviewed (07-JUN-1989) by Nutter R.C.
XX
FH Key Location/Qualifiers
FH
FT source 1. .4437
FT /db_xref="taxon:12138"
FT /mol_type="genomic RNA"
FT /organism="Maize chlorotic mottle virus"
FT CDS 118. .987
FT /db_xref="UniProt/Swiss-Prot:P11639"
FT /note="32 kDa protein"
FT /protein_id="CAA32861.1"
FT /translation="MPSPCTYGDPTFNSRILEAVVADVLGGTEDDGGPSLEEWFDAQTL
FT SDYTNCATDPPMATVHTRENDIKSWTELSENFPDLVRYPESLVETLLDTEHECGHFYDA
FT PDSFQISVTAMFTDRCKCQFCDPNFQARSLSRALLGPLPESGDDAEWMEQAYTPDAELF
FT VNEPTDDPIPTTDCKRPIQPTWSVDVYSKQVDSDWGLSDSTNVTVCSASSSLLPAGRGG
FT IYFMCPRPEGIERVCLQVGAKIRSGAPNSGTITNLPGGTGYGTEWSDDGYETQWSDGPY
FT SIPSGLSD"
FT CDS 137. .1453
FT /db_xref="GOA:P11640"
FT /db_xref="UniProt/Swiss-Prot:P11640"
FT /note="50 kDa protein"
FT /product="putative replicase"
FT /protein_id="CAA32862.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA
FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF
FT LSQLCSQIVASANFVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQIARDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELK"
FT CDS 137. .3034
FT /db_xref="GOA:Q9IBM2"
FT /db_xref="UniProt/TrEMBL:Q9IBM2"
FT /note="readthrough of amber stop codon"
FT /note="111 kDa protein"
FT /transl_except=(pos:1451. .1453,aa:OTHER)
FT /product="putative replicase"
FT /protein_id="CAB55589.1"
FT /translation="MATLPSIHAFWKLWWPTFSEERKMTVVQALRNGLTRKLFQITQIA
FT QQILRWPPYIRERMTSSLGQSLVKTFQTLLGIRKALSRLCLTRNMNVDIFTMLLIPFKF
FT LSQLCSQIVASANFVIQTFRHGLSRGLCLARCRNPETMRSGWSKHTLQMQNCSSTSPLM
FT TPFQPQIARDLSNPHGLWMSTRNKLTRTGGSAIQQTSRYVRLAVRFSLLAAGAYISCVL
FT ARKALKEYVYRWELKSDQELPTREQSQISQVEQAMEQNGAMMVMKLNGPTAPILSLQDC
FT LTKHVLVPEIVDEEGTVTQKEQSTFLIREFGPAVRNLVTLAKLEFGGIPKKTTANELTV
FT WRFLVRKCEHANMNPTDSRTAISMALPYVFMPCRTDVGRASIPLRDESIEICRQYRAQF
FT VEETPLRRVFNNPLSGKAWRNWVRHLGGLDDPALFQELKXGCLEEWLGVQSRRTRARHP
FT KLRSHFKDTRHKTRRVFRIAGLGNLYEFGVHNNSAVNLERGLMERVFYVKDDKGELVSC
FT PEPISGIFWKNLKGFRNSIVHHVGHRHPVSRETFLAYYTGPKRTMYEKAVNSLYEMPVS
FT YDDAKLKTFVKAEKINLTKKADPVPRVIQPRAPRYNVELGRYLRPVEHPIYHAIDKIWG
FT GPTIMKGYSVEQIGRHIENAFRSFTDPVAIGFDASRFDQHVSVEALRWEHSVYSRIYGY
FT PELLTQLLRWQIHNRGTAYASDGAFNYQVDGKRMSGDMNISLGNCILATAITHDFVTKL
FT GIPARLINNGDDNVLICPAVEVGRVRQELYRHWLNYGFEVISEEPVYILEQVEFCQMRP
FT VFDGTQYTMMRDPRTTMSKDAYAVTPFNTPTAARRWMRAVGECGLSLTGGLPVKQEYYT
FT ALVKHGLDPKNIKQGKDFDSGLYYLSKLSNRKWQEVQESARYSFWLAFGYTPDEQRALE
FT EYFKSWTPTFEWSTTGILAEIPECLLLKHNPLPPT"
FT mRNA 2970. .4437
FT /note="subgenomic RNA1 for p7, p31 and coat protein (minor
FT species)"
FT mRNA 2971. .4437
FT /note="subgenomic RNA1 for p7, p31 and coat protein (major
FT species)"
FT CDS 2995. .3201
FT /db_xref="UniProt/Swiss-Prot:P11641"
FT /product="p7 protein"
FT /protein_id="CAB55590.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFN"
FT CDS 2995. .3834
FT /db_xref="UniProt/Swiss-Prot:P11641"
FT /note="readthrough of ocher stop codon"
FT /transl_except=(pos:3199. .3201,aa:OTHER)
FT /product="p31 protein"
FT /protein_id="CAB55591.1"
FT /translation="MSSSQTQSPPTDVARRQQTGTAVRSEDNHRNQLENIAVGKLTKSE
FT GAPAQQNVIIAKEVVINNHFNFNXAGVCVCRFVLASVVKEFNLGDFDLLDSVHLDEDTG
FT HRCRLSRAIGVLDRSDTKIPKDRHTQWRQVAGLPEVESSADVAWKQNPELFEPTRLSLD
FT PTRSETVPPLREQPAPCPKFCLQCQQQLLTRFSRFQCVQGLTSRLERRPDTLGRPNGWQ
FT HNHRCGIQLCSTLCASLGRHSQQTPLADTFPWHSSPITCYQYPLGWRMLPGSCPQLQ"
FT CDS 3384. .4094
FT /db_xref="GOA:P11642"
FT /db_xref="UniProt/Swiss-Prot:P11642"
FT /product="coat protein"
FT /protein_id="CAA32864.1"
FT /translation="MAASSRSTRGRKQRGRSVEAKSRAIRANPPVPRPNPQRNRPPPAG
FT TTCSMSEILLAVSATTADQILEIPVCAGIDFPAGTSPRYIGAAKWLAAQSQMWNTIVFN
FT SVRITWETFTADTTSGYISMAFLSDYMLSIPTGVEDVARIVPSATIALKNRGPSIVMPQ
FT NRTVFRCIQAGQFAALGSAADKQMYSPGRFIVAIPKASATQAVGQIKISYSVSYRGAAI
FT LQPALVPGPGLANH"
FT misc_RNA 4101. .4437
FT /note="subgenomic RNA2 with unknown function"
XX
SQ Sequence 4437 BP; 1198 A; 1115 C; 1112 G; 1012 T; 0 other;
X14736 Length: 4437 September 14, 2004 08:36 Type: N Check: 9184 ..
1 aggtaatctg cggcaacaga ccccaacgcg ttagacacga ccttacagtt
51 gactcacgtc ttgcatcctg tgagagctct aacgtgggaa tttgcccctg
101 actggcaatc aggtttcatg ccctctccct gcacttatgg cgaccctacc
151 ttcaattcac gcattttgga agctgtggtg gccgacgttc tcggaggaac
201 ggaagatgac ggtggtccaa gccttgagga atggtttgac gcgcaaactc
251 tttcagatta cacaaattgc gcaacagatc ctccgatggc caccgtacat
301 acgcgagaga atgacatcaa gtcttggaca gagcttagtg aaaactttcc
351 agaccttgtt aggtatccgg aaagccttgt cgagactctg cttgacacgg
401 aacatgaatg tggacatttt tacgatgctc ctgattcctt tcaaatttct
451 gtcacagcta tgttcacaga tcgttgcaag tgccaatttt gtgatccaaa
501 ctttcaggca cggtctctct cgcgggctct gcttggcccg ttgccggaat
551 ccggagacga tgcggagtgg atggagcaag catacactcc agatgcagaa
601 ttgttcgtca acgagcccac tgatgacccc attccaacca cagattgcaa
651 gagacctatc caacccacat ggtctgtgga tgtctactcg aaacaagttg
701 actcggactg ggggctcagc gattcaacaa acgtcacggt atgttcggct
751 agcagttcgc ttctccctgc tggccgcggg ggcatatatt tcatgtgtcc
801 tcgcccggaa ggcattgaaa gagtatgtct acaggtggga gctaaaatcc
851 gatcaggagc tcccaactcg ggaacaatca caaatctccc aggtggaaca
901 ggctatggaa cagaatggag cgatgatggt tatgaaactc aatggtccga
951 cggcccctat tctatccctt caggactgtc tgactaaaca cgttctggtt
1001 ccagagattg tggacgaaga aggcacagta acacaaaaag aacagtccac
1051 ttttctcatc cgtgagtttg gtcctgccgt cagaaaccta gtgaccctcg
1101 caaagctaga attcggcgga attccaaaga aaactacagc caatgaactt
1151 acggtttggc ggttcctagt acggaagtgt gaacatgcaa atatgaaccc
1201 aactgactcc cgtactgcca tttcaatggc cctgccatac gtgtttatgc
1251 cgtgtcgcac tgatgttgga agagcttcaa ttccactgcg tgatgaatcc
1301 attgaaatct gtcgccaata tcgcgcacaa tttgtggagg agacacccct
1351 acggcgagta ttcaacaacc cattgagcgg aaaagcatgg cgtaactggg
1401 ttaggcacct gggtgggctg gatgatccag ccctattcca ggagttgaaa
1451 taggggtgtc ttgaagagtg gcttggggtg cagtctcggc gcacacgtgc
1501 gcggcacccc aaactccgta gccactttaa agacacgaga cacaaaaccc
1551 gcagagtgtt ccggattgca ggtttgggca acctgtatga atttggagtc
1601 cacaacaact ctgcggtaaa cctggaacgt ggactaatgg agcgagtatt
1651 ttatgtgaaa gatgataagg gggaactcgt ttcatgccct gagcctatta
1701 gtgggatatt ttggaaaaac ttgaagggat tcagaaatag cattgtacac
1751 catgtgggac acagacatcc agtgtcacga gagacgtttc tcgcttacta
1801 tacagggcca aagcgcacca tgtatgagaa agcggtgaat tccctctacg
1851 aaatgcctgt ctcatacgac gatgctaaac tgaaaacatt tgtaaaagca
1901 gaaaagatca atctcactaa gaaagctgat cctgtaccac gtgtgatcca
1951 gccccgtgct ccccggtata atgtggaact gggtaggtat ctgagaccgg
2001 ttgagcaccc aatctaccat gctatagaca agatttgggg tggtccgact
2051 attatgaaag gttactcggt tgaacagatt ggaagacata ttgagaacgc
2101 gttccgatcg ttcaccgatc cagtggccat tggatttgat gcaagtcggt
2151 ttgatcaaca cgtgagtgtt gaagctctac gctgggaaca tagcgtatac
2201 tcacggattt atggctatcc agagcttctc acacaattgc tgcggtggca
2251 gattcataat cgcggaacag catatgcctc agacggcgcg ttcaactacc
2301 aggtggatgg taaacgcatg agtggggaca tgaacatatc attgggcaat
2351 tgcatactgg ccacagcaat cacacatgac ttcgtgacca agctgggaat
2401 tccagccaga ttaatcaaca atggagatga caacgtcctg atctgtccgg
2451 cagtggaggt aggcagagtc agacaggaac tgtacagaca ttggttgaac
2501 tacggatttg aagtcatatc agaagaacct gtgtacatcc ttgaacaggt
2551 tgaattttgc cagatgcgac cagtcttcga cggtacacaa tacaccatga
2601 tgagagaccc tcgcaccacc atgtccaaag atgcctatgc tgtaacccct
2651 tttaacacac caaccgcagc aaggaggtgg atgagagcag ttggggaatg
2701 cggactcagc cttacaggag gcctccccgt aaagcaggaa tactatactg
2751 ctcttgtaaa acacggacta gatccgaaaa acatcaaaca gggaaaagac
2801 tttgacagtg ggctatacta tcttagcaag ttatccaatc gcaaatggca
2851 ggaggtccaa gagagcgccc gctactcatt ctggcttgct ttcgggtaca
2901 caccagatga acaacgagcg ttagaggagt attttaaatc ttggacccct
2951 acgtttgaat ggtccacaac gggtattttg gcagaaattc ccgaatgtct
3001 tcttctcaaa cacaatcccc tcccaccgac gtagcccgca gacaacagac
3051 cggcactgcc gtgcgatctg aagacaacca tcgcaatcag ttggaaaaca
3101 ttgctgttgg aaaactcact aaatctgaag gagcacctgc ccaacagaac
3151 gtgatcattg cgaaagaggt ggttatcaat aaccacttca atttcaactg
3201 agctggagtg tgtgtgtgta gattcgtcct ggcctcagtg gttaaggaat
3251 ttaatcttgg ggattttgat ctcctcgatt ctgttcatct tgacgaagac
3301 acaggacacc gttgccgttt atcacgagcc atcggtgtac tcgatcgatc
3351 agacacaaaa attccaaaag atcgacatac acaatggcgg caagtagccg
3401 gtctacccga ggtagaaagc agcgcggacg tagcgtggaa gcaaaatcca
3451 gagctattcg agccaacccg cctgtccctc gacccaaccc gcagcgaaac
3501 cgtccccccc ctgcgggaac aacctgctcc atgtccgaaa ttctgcttgc
3551 agtgtcagca acaactgctg accagattct cgagattcca gtgtgtgcag
3601 ggattgactt cccggctgga acgtcgcccc gatacattgg ggcggccaaa
3651 tggctggcag cacaatcaca gatgtggaat acaattgtgt tcaactctgt
3701 gcgcatcact tgggagacat tcacagcaga caccactagc ggatacattt
3751 ccatggcatt cctctccgat tacatgttat caatacccac tggggtggag
3801 gatgttgcca ggatcgtgcc ctcagctaca atagctctga agaacagagg
3851 gccatccatt gtcatgccac agaaccgcac tgtgttcagg tgtatacagg
3901 ctggtcagtt tgctgcattg ggcagcgccg ctgacaagca aatgtattcc
3951 ccaggacgat tcattgtggc tatccctaaa gctagtgcaa cacaagcggt
4001 aggccaaatc aaaatctcgt actccgtgtc ctaccgtgga gcagcgatcc
4051 tacaacccgc cctggttcca ggcccagggc tggcaaatca ttgagcacaa
4101 ggtgagccgg catgaggttg caagaccgga acaaccagtc cttctggcag
4151 agtcctgcca atccaaagtg tttgggagcc taaatcgtat actagtagtt
4201 tgcgtgatga ccatgactgg agagtgggcg gcggctgcca accgcagact
4251 gggcgtatat agtaagcctt gacccaccca tggacaacac gtacttacga
4301 acggtgcgac atggtaactg gatacactta accctggggc aagtagatgc
4351 taggaaacta gcatcgggcc gcccacgagg gtttctgaac tcaacggagt
4401 agaacggggg gggggtaatg cccctctctt ccggccc