Sequence of DPV Peanut clump virus
Peanut clump virus genomic RNA 1
ACC No: X78602
Dated: 2003-03-19 | Length: 5897 | CRC: -1457325920
!!NA_SEQUENCE 1.0
ID PCVRNA1 standard; RNA; VRL; 5897 BP.
XX
AC X78602;
XX
SV X78602.1
XX
DT 01-NOV-1994 (Rel. 41, Created)
DT 19-MAR-2003 (Rel. 75, Last updated, Version 3)
XX
DE Peanut clump virus genomic RNA 1
XX
KW p15 protein; replicase.
XX
OS Peanut clump virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Pecluvirus.
XX
RN [1]
RX MEDLINE; 95053899.
RX PUBMED; 7964624.
RA Herzog E., Guilley H., Manohar S.K., Dollet M., Richards K., Fritsch C.,
RA Jonard G.;
RT "Complete nucleotide sequence of peanut clump virus RNA 1 and relationships
RT with other fungus-transmitted rod-shaped viruses";
RL J. Gen. Virol. 75:3147-3155(1994).
XX
RN [2]
RP 1-5897
RA Jonard G.;
RT ;
RL Submitted (01-APR-1994) to the EMBL/GenBank/DDBJ databases.
RL G. Jonard, Institut de Biologie Moleculaire des, Plantes, 12, rue du
RL General Zimmer, 67084 Strasbourg (Cedex), FRANCE
XX
DR GOA; Q84687; Q84687.
DR SPTREMBL; Q84687; Q84687.
DR SPTREMBL; Q84688; Q84688.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5897
FT /db_xref="taxon:28355"
FT /organism="Peanut clump virus"
FT /segment="RNA 1"
FT CDS 132. .3569
FT /db_xref="GOA:Q84687"
FT /db_xref="SPTREMBL:Q84687"
FT /note="hypothetical replicase"
FT /gene="orf1"
FT /protein_id="CAA55335.1"
FT /translation="MAQSNIYSDMIDRYVNDETVVQNLFMTASSTTKSLLHDVIADRAA
FT NHLKSLEKKQKQKELVDVRRVLSSESLNALCALYPEFHVITSNCERGSHTMAAVCRTLE
FT TLYIKSLLPVKHTVVWDVGGNWLTHVKYASDQNVHCCCPLLDYRDAMRKQERLLSLELF
FT ARNGKEKTEEFDECYKQIKAFELQRRAALNAGTAASCNNKYCCDVFQDCAYEPEEGKMR
FT VAMGVHSVYDMTLQDLVNGLERKGIEHFIGCFLFSPKLLLGQEEGELPFVNGRFKVKKG
FT KIRFFFLDDTTHGYEHDLNDYLDYIKKSFVVAKCGHVYMLELFSVRGDTIFFKLYDVTE
FT YSLSRTRLLSSLLPTRDHVFKAMPIPNTEEVIVPLYWIENGEVVVERRYLPKSLVCRGM
FT EWLMRNKANALQYETLLNYLVSTNVSAVFNGCQVREGLKTDPWILCKLAMTLLVREEFN
FT REKQKKILEMLRMSGSEQISLKSIFRGVFVKFFGSVSLKARVLKTVARWCGVEFGSMKY
FT DVEVLPLYVEIEDSLCLWRKGRLEGIESYDMKDEVLRYNEKKQDVERLTRSLEQKVNDG
FT SASDTSSKLKKVAAFAVLASNKDTPLGRFIASRSLSSVSKRSSSSDASHSGSGLSASEK
FT VVSSEEIASPQISVSESCVEEVPPMIIPYTVKKRWADYSSDSSEDVVAGEDFMSPVSTL
FT VLRRRLPAPPAYPDDVQEAACLEYLWYLKCKIICDFSAMYSVVCDFKDQLLHDGRCEFP
FT KNAFFLKVGEETKWAMKRPTSQQVGHQYCVKFSENDDHMELVPVAWSKHDDEIRGIYPQ
FT GLGDGWYMFSDLTYLMNEWLIFNKLVLVYPSLPKTQLKVRLIDGVPGCGKSTWILSNCD
FT LDRQIVLAEGREATDDLRRRFTEKGFPKKRCEERVRTVHSFMLKPLSRRFNSFHFDEAL
FT MAHAGMIYICGRMLNAREVICQGDSKQIPFINRVEQISLKYSSFNVVEREHVRKTYRCP
FT LDIVYYLNKKKYYRGDDIVGYSKTTHSVDTKSKSSGFTSLVKLPKEPVHYLTFLQAEKE
FT EVSKHLAGVKGATVSTVHEAQGKTFERVNLVRLKMTDNELYPGGAKSEPYTIVGLTRHT
FT RSLVYYSVVEDRLYEDISALKDVMEDQLLKCSFSEQTK"
FT misc_feature 3570. .5150
FT /note="hypothetical readthrough domain of replicase"
FT /gene="orf2"
FT CDS 5225. .5599
FT /db_xref="SPTREMBL:Q84688"
FT /note="hypothetical protein P15"
FT /gene="orf3"
FT /protein_id="CAA55336.1"
FT /translation="MPKSEFFREERKRRVALLGEDAVCKLNGVCGYSCGMPPAVEKVSV
FT PADTEEDVYMLIFPYEQFCGEKHFKLYESLKDVSDDELKLRRLERQRETLLASFQQKLK
FT RYDEKIALLSEKFKNLRSKL"
XX
SQ Sequence 5897 BP; 1639 A; 1001 C; 1460 G; 1797 T; 0 other;
X78602 Length: 5897 April 1, 2003 09:30 Type: N Check: 2678 ..
1 gtattctgtg gtgtttgttt ttggcctagg tcaaggatta gataccacgg
51 tttcgcaatt cctgcaactt tcgctttgcg acgcggggcc cctttgctgt
101 cttgtatcat ttcgttcgcg acgatatcaa gatggctcaa tctaacattt
151 attctgacat gattgacaga tacgttaacg atgagactgt ggtgcagaat
201 ctgtttatga cagcttcttc tactacaaaa tcgttgttac atgatgtcat
251 cgctgaccgt gcagctaacc atttaaaaag tttggaaaag aaacaaaaac
301 aaaaagagtt agttgatgtg aggcgtgtgt taagttccga gtcattaaac
351 gcattgtgtg cattgtatcc tgagtttcat gttatcacta gtaactgtga
401 gcgtgggagt catacaatgg cggctgtttg tcgaacgttg gagactctgt
451 atataaaaag tctgttgcct gtaaaacata cagttgtgtg ggatgttggt
501 ggaaactggt taacgcatgt taagtacgct agtgaccaaa atgtgcattg
551 ttgttgtccg ttgctggact atagggatgc aatgcgcaag caagaacgtt
601 tgttgagtct agagcttttt gctcgtaatg gtaaagaaaa aactgaggag
651 ttcgatgagt gttataagca gataaaagct tttgagcttc agcgtcgtgc
701 tgctttgaat gctggaaccg ctgcaagttg taataataag tactgttgcg
751 acgtcttcca ggattgtgct tatgagccag aagaaggaaa aatgagagtt
801 gcaatgggtg ttcatagtgt gtatgatatg actttgcagg atttggttaa
851 tggtttggag agaaaaggta ttgagcactt tattggatgt ttcttgttct
901 ctcctaagtt actgcttggt caggaggaag gtgagcttcc ttttgtcaac
951 ggtcggttta aggtaaagaa aggaaagatt cggttctttt tcttggatga
1001 cactactcat ggctatgagc atgacctaaa tgattattta gattacatta
1051 aaaaatcttt tgtggtagct aaatgtggtc atgtctacat gcttgagctt
1101 ttttctgtaa gaggggacac catcttcttt aagctgtatg atgttaccga
1151 gtacagtttg tcgagaacta ggcttttatc ttccttgttg ccgactcggg
1201 accatgtatt caaagctatg ccaataccta atactgagga ggtaatagtg
1251 ccgctgtact ggattgaaaa tggagaagtt gtggttgaac ggcgttacct
1301 tccaaaatcc ctcgtttgtc gaggaatgga gtggttgatg cgtaataagg
1351 ctaatgcttt acagtacgag acattgctga attatttggt ttcaactaac
1401 gtttctgccg tctttaatgg atgtcaggtg cgagaaggtt tgaagacgga
1451 tccttggata ttgtgtaagt tggcaatgac tttgttagtg cgcgaagaat
1501 ttaataggga aaaacagaag aagattctgg agatgttgag gatgagcggt
1551 tcagagcaga taagtttaaa gagtatcttc cggggagtgt ttgtaaaatt
1601 ttttggaagt gtctctttga aggctcgagt cctaaaaact gtagctcgct
1651 ggtgtggtgt tgaattcggg agcatgaaat acgatgtgga agttcttccc
1701 ttatacgttg aaattgaaga tagcctctgt ttgtggagga aaggtaggtt
1751 ggaaggaatc gagagttacg acatgaaaga tgaagtgctg aggtacaatg
1801 aaaagaaaca ggatgttgag cgtcttacga gatccttaga gcagaaggta
1851 aatgatggct cggcatcaga cacgtcttca aaattgaaga aagtggctgc
1901 ctttgccgtc ttggctagta ataaagacac tcctttgggg aggtttattg
1951 cctctagatc attgtccagc gtctcgaaac ggtcgtcgtc cagtgacgcg
2001 agtcattccg gttccggatt gtcagctagt gagaaggttg ttagttccga
2051 agagattgca tctccgcaga tatctgtttc tgagagttgt gtggaagaag
2101 tcccacctat gattatacct tacactgtga agaaacgttg ggcggattat
2151 tctagtgaca gtagcgaaga cgtcgtagca ggggaagact ttatgtcacc
2201 ggtgtcaact ttggtcctcc ggagacgtct acctgccccc cctgcgtatc
2251 cggatgacgt tcaggaggct gcttgtctgg agtatctgtg gtatctgaag
2301 tgtaagatta tttgtgactt ctctgctatg tattctgtcg tgtgtgattt
2351 caaggatcag ttactgcatg atgggaggtg cgagtttccg aaaaatgctt
2401 tctttttgaa agtaggggag gaaacaaagt gggcgatgaa gcggcctaca
2451 tctcaacagg tcggacatca atattgtgta aaattttctg aaaatgacga
2501 tcatatggaa ctagtgccag tcgcttggag taagcacgac gatgagatac
2551 gtggtatcta cccgcaaggt ctgggggacg gttggtatat gttttcagac
2601 ttaacttacc tgatgaatga atggttaatc tttaataagt tggtcttagt
2651 gtacccgtcc ttgccaaaaa cacagttaaa agttagatta atcgacggcg
2701 tgcctggttg cgggaaatcc acgtggattt tgagcaattg tgatctagat
2751 cgccagattg tgcttgccga aggcagagag gcaactgatg atttaaggag
2801 aagatttact gagaaagggt ttccaaagaa aaggtgtgaa gagagagtta
2851 gaactgttca ttcctttatg ttgaaacctt tatcacgacg cttcaactct
2901 ttccattttg atgaagcact tatggcccac gctggcatga tttacatttg
2951 tggtcgtatg ttgaatgcga gagaggttat atgtcaaggt gactctaaac
3001 agattccgtt tatcaaccgt gtagaacaaa tctcgttgaa gtattcttca
3051 ttcaacgttg tggaaagaga acatgtgaga aaaacttatc gctgtccgct
3101 cgacattgtc tactatttga ataagaaaaa gtattatcga ggtgatgaca
3151 ttgtcggtta ttcaaagact acacattctg ttgatactaa atcgaagagc
3201 tctgggttca cctctcttgt gaaacttccg aaggaacctg tacattactt
3251 aacgttttta caggctgaaa aggaagaagt ttccaagcat ttggctggcg
3301 taaaaggtgc tacagtctca actgttcatg aggcgcaggg aaagactttt
3351 gagcgtgtca acttggtcag attgaagatg acggataacg aattgtaccc
3401 cggtggtgca aaatccgaac cttacactat tgttggtttg accagacata
3451 caagaagtct tgtgtattat tcagtcgttg aggatagatt atacgaggat
3501 atttctgcgc ttaaagatgt tatggaagat cagttgctga aatgctcttt
3551 ctcagaacag accaaatgac ggtttgggtc aaagtttgag tccattgttg
3601 tagcagatag gaaagttatg gctcctgatg taggagacct agtaactatc
3651 caagatcttt acgacaggac ctttccagga aattcgactt tggactcaag
3701 ctttgacggg tacaccgtgg cttcttctga cttagagtta gaaatttcta
3751 actgtaaaat cgcgcctaat aagtctatta gaggttttca ggaaaaaatt
3801 tgtttttctc ctaaacttcg gactgccatg cctgaaaaac gtcaaggatc
3851 gtttgcggag tctattttgg ctttgagaaa acggaatatg gcatgtccac
3901 gactgcaaga gtctgtaaac gagcaccaga tcattgaaga tactattgca
3951 aaagctttct cgtgttattt tacagactcg tttgttgatc agagcccttt
4001 gataaccgat gaatcagctt tgcgatggtg ggagaagcaa tcaactacag
4051 cgaagaatca gatgttggcg gattggcgaa cgttggacca aattgatgtg
4101 tgtacttata atttcatgat taagaatgat gtgaaaccga aactggattt
4151 gacgcctcaa agtgaatatg cagctttgca aacagttgtt tatccggaaa
4201 aaatagtaaa cggacttttt ggtcccgtta ttaaggagat aaatgaacgt
4251 gtcttatcgg ctttgaagcc gaatgttttt gttaatacac gtatgacttc
4301 cgaggagttg agtcgtacag ctgaatacct gtatcctggc gacgagtttg
4351 aagtcgttga gattgatttt tcaaaatacg acaaatcaaa aacgtcatta
4401 catattagaa tggtgatcaa gctgtacgaa cagtttggtc tgaatgggta
4451 catgaagtat ttgtgggaaa aatctcagac tcaaactgta gtgaaagata
4501 gaaactacgg agtggaagct tacattttgt accaacaaaa gtcaggtaat
4551 tgcgatacat atggttcgaa tacttattct tctatgttcg cactactcga
4601 ttgtttgcca atggagaaag ctgtgtattc tattttcggt ggtgatgatt
4651 ccttgattct ctttcctaag gggacaatta tcaatgatcc ttgtgggagg
4701 cttgcgtcac tctggaactt tgactgtaag tctatgaaat tccgggttcc
4751 tgccttttgc ggaaaatttc tgatccctgt gggaggtagg tatcgttttg
4801 aacctgatcc tatgaagtta attactaaat taggaaacaa aacgattgca
4851 attgagggaa aaacaaaagc cgaagtaaga aaaaatgggt ctaaattgct
4901 ttctgaaatc tatgtttcga tttgtgataa ttataagaat tatgacgatg
4951 cccgagttct agacgctctt gcttacgctt tggtcgacag gtataaacca
5001 gatatctgcc cgaaagcggc tttatatagt ttaagtaaat ttttaaaatc
5051 tttcgagtcc tttactgagt tgtttgatat atattttaat ggtgaaagac
5101 tagcttttga tttcgttccg gttaaagtcc gaaaagatta tgagtggtaa
5151 actattgact ttcttagtct ttagttgttg tattttcctt tgtattttct
5201 cgttgacacg aatttctttt agtcatgcct aagtcggagt tctttcgtga
5251 ggagcgcaag cgcagagtcg cccttttagg agaggatgct gtttgcaagc
5301 tcaatggggt ttgtggttac tcttgtggta tgccacccgc tgtagagaaa
5351 gtgtcagtac cggcggatac agaagaggac gtctacatgc tgatctttcc
5401 ttacgagcaa ttctgtggag agaaacattt caagctgtat gagtcactca
5451 aggatgtttc tgatgatgag ttgaaactga gaagactgga gaggcagcga
5501 gaaactctgt tggctagctt tcagcagaaa ctcaaaaggt atgatgaaaa
5551 gattgcgctg cttagcgaaa agtttaaaaa tcttcgttct aaactgtaag
5601 gtttttgttt tcttgctaaa aacaacaaaa atgattatgc cgggcctgat
5651 cagctcgggg cggtgcgagc catagagcac ggttgtgggt ttaaactaaa
5701 aaccctcaag tctcattccc tagctattat aaggttaatt gcaaaaaccc
5751 ttatatctgg ctaagacggg aatgccgaca agtcgtcggg agtgtcaaga
5801 cacgacactt agtggctggc gtagactgct ggtatgtgaa ctcatagagt
5851 tcacataggt gcaaatcccc cgctgaaacg gagcgatatc cgtccca