Sequence of DPV Hibiscus chlorotic ringspot virus
Hibiscus chlorotic ringspot virus genomic RNA
ACC No: X86448
Dated: 2005-04-18 | Length: 3911 | CRC: 1490820313
!!NA_SEQUENCE 1.0
ID HCRVGRNA standard; genomic RNA; VRL; 3911 BP.
XX
AC X86448;
XX
SV X86448.2
XX
DT 17-MAR-2000 (Rel. 63, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 2)
XX
DE Hibiscus chlorotic ringspot virus genomic RNA
XX
KW coat protein; RNA-dependent RNA polymerase.
XX
OS Hibiscus chlorotic ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RX DOI; 10.1128/JVI.74.7.3149-3155.2000.
RX MEDLINE; 20173705.
RX PUBMED; 10708431.
RA Huang M., Koh D.C.Y., Weng L., Chang M.L., Yap Y.K., Zhang Y.K., Wong S.M.;
RT "Complete nucleotide sequence and genome organization of hibiscus chlorotic
RT ringspot virus, a new member of the genus Carmovirus: evidence for the
RT presence and expression of two novel open reading frames.";
RL J. Virol. 74(7):3149-3155(2000).
XX
RN [2]
RC Sequence revised by Dr. Wong S.K. (04-JUN-1999)
RP 1-3911
RA Weng L.;
RT ;
RL Submitted (21-APR-1995) to the EMBL/GenBank/DDBJ databases.
RL L. Weng, National University of Singapore, Dept. of Botany, Kent Ridge,
RL Singapore 0511, SINGAPORE
XX
FH Key Location/Qualifiers
FH
FT source 1. .3911
FT /db_xref="taxon:53181"
FT /mol_type="genomic RNA"
FT /organism="Hibiscus chlorotic ringspot virus"
FT /clone="pHCRV-220"
FT /cultivar="Hibiscus sp."
FT CDS 31. .675
FT /db_xref="UniProt/TrEMBL:Q9IR84"
FT /gene="p28"
FT /product="P28 protein"
FT /protein_id="CAA60168.1"
FT /translation="MLSHAFSIAFETASLGAALCVAPFAAAVEIITHPRIAPRDPCIAE
FT ELCMRDELEVADPTDEEPEACLENISGTSSDKKVSKIKRRHRGKFALHAAIAAKLHFGG
FT TPTPTRSNELAVRRWLASYCKERRLVDTHAIQAIALATPLVLTPGAAEITERAILNSAV
FT FGMRRAALAEASKPTSLTYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVK"
FT CDS 31. .2238
FT /db_xref="GOA:Q9IR83"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:Q9IR83"
FT /note="amber stop-codon"
FT /transl_except=(pos:673. .675,aa:OTHER)
FT /product="RNA-dependent RNA polymerase"
FT /protein_id="CAB81767.1"
FT /translation="MLSHAFSIAFETASLGAALCVAPFAAAVEIITHPRIAPRDPCIAE
FT ELCMRDELEVADPTDEEPEACLENISGTSSDKKVSKIKRRHRGKFALHAAIAAKLHFGG
FT TPTPTRSNELAVRRWLASYCKERRLVDTHAIQAIALATPLVLTPGAAEITERAILNSAV
FT FGMRRAALAEASKPTSLTYQMVFEPHRPRTWLRAWRKVVGLPDFQGYSPVKXGCLREIA
FT GVDTKIVRGEHQSMAVFPREGISKPRRIFQVCGMGNGTTFGVHNNSLTNLRRGLVERVF
FT YVEDACKNLVPTPQPLPGKFQELKYLARRVARIAGHHTPIPREHYPGLYKGRRYQIYAD
FT AVNSLASNPVHRRDSFLKTFVKAEKINFSAKPDPAPRVIQPRDPRYNVEVGRYLKPYEH
FT HLYRALDVVWKGPTVLKGYTVSEIGSIMHSHWSQFQKPCAVGFDMKRFDQHVSVDALRF
FT EHSVYGRSFCSKELDRLLEWQLLNSGVGHANDGYIRYKVDGCRMSGDVNTAMGNCLLAC
FT LITKHLLKGIRCRLINNGDDCVLFFNTPDLAAVTERLAHWLDFGFQCVVEEPVYELEEV
FT EFCQMKPVFDGEEWVCVRNVHVSVAKDTYSINPWNNECDAGRWIRAIGECGEALTGGIP
FT VLNAYYKVFKRAYKAPGRVKESLAFDSGMYRLSQRCSRSFHEPTEEARVSFFKAFGVDP
FT MAQMAIEEFYDSMDIELEFAPEGKLDDISLLWLLRNRMIAS"
FT CDS 41. .670
FT /db_xref="UniProt/TrEMBL:Q9IR82"
FT /product="hypothetical protein"
FT /protein_id="CAB81768.1"
FT /translation="MLSQLLSKLLLSVRHYVSHLSPQLLKLSRTPVSLHEILASLKSSV
FT CAMSLRLLIPLMRNLKLVWKIFPVLQAIRKCLKSKGDTGVSLLSMRQSQQSYILGALQP
FT QRARMSLLCGGGLQVIARKGGWLIHTLYKRSLWPLLWYLRQGPLKSLSERSSIALFSVC
FT GGRLSLRPLNRLVSHTKWYLSLIGRGLGSEPGGKWWVSLIFRGTRP"
FT CDS 2205. .2417
FT /db_xref="GOA:Q9IR81"
FT /db_xref="InterPro:IPR007982"
FT /db_xref="UniProt/TrEMBL:Q9IR81"
FT /product="putative movement protein P8"
FT /protein_id="CAB81769.1"
FT /translation="MASPQSNDSFIELNPHNTGDSKGAGKGNRQAKKEVALQAVHKANK
FT HDEAVSGGSFVFVADKVEVTININF"
FT CDS 2344. .2580
FT /db_xref="UniProt/TrEMBL:Q9IR80"
FT /product="putative movement protein P9"
FT /protein_id="CAB81770.1"
FT /translation="MKLFLGVLSFLLLIKLRLPLTLTFDVDLRTLRENCFIITTLSLFG
FT FFITVLIKAESEHFHFHTHDSSKTQNIVVNTGK"
FT CDS 2603. .3277
FT /db_xref="UniProt/TrEMBL:Q9IR79"
FT /product="hypothetical protein"
FT /protein_id="CAB81771.1"
FT /translation="MTQPFNVRLMPIYLGQSNLRTMGGLLFLRVKREQPIDTRVEPVLL
FT LLKLSCQHLRLQLRWPPRCGLETLEQTLGRLENRSLSSIASLWAISPGRLVVGYWWSRG
FT QSTPATYSASPGFLYLLPDMRSTACHHYLFDILQLAPQQRRARSSWHLIKMLQMLPLPP
FT RATCITMMEQLESRPGIVPCCKYLAIMWIGLLMIPVVPTLSLLTLVRWLLPIMANLKGM
FT WM"
FT CDS 2590. .3627
FT /db_xref="GOA:Q9IR78"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:Q9IR78"
FT /product="coat protein"
FT /protein_id="CAA60169.2"
FT /translation="MLQKNDPAVQRAFNAHLPWAIKLKNDGWAALSKGQKRAANRYAGG
FT TRPVTSQIKLSTLKVTAPVAASMRTRNPGANIRTAGKSVTVVHCEFVGNIARQTGSGLL
FT VVERTINPSNVLSFPWLSVLAAGYEKYRVSSLSLRYSPTCATTTEGKVILAFDKDAADA
FT SPTSKSDMYNHDGAVGVSPWDSAMLQIPCDNVDRFINDSSSSDPKLVDFGKVVVANYGQ
FT SEGDVDVIGELFLQYSITLKIPQGMATPTQSGVGISSVGPSLFRVQLRDDTHVFTCNGT
FT GRFLFFFNSTVDATSTIAGMEVKQKSSTDDKGETTIMELLATESGGTIAILAATGTLTW
FT WACRN"
XX
SQ Sequence 3911 BP; 975 A; 917 C; 1007 G; 1012 T; 0 other;
X86448 Length: 3911 May 10, 2005 10:10 Type: N Check: 9766 ..
1 gggaaaccgt ggcaagtttc cgaattctct atgctctcac atgctttctc
51 aattgctttc gaaactgctt ctctcggtgc ggcactatgt gtcgcacctt
101 tcgccgcagc tgttgaaatt atcacgcacc cccgtatcgc tccacgagat
151 ccttgcatcg ctgaagagct ctgtatgcgc gatgagcttg aggttgctga
201 tcccactgat gaggaacctg aagcttgtct ggaaaatatt tccggtactt
251 caagcgataa gaaagtgtct aaaatcaaaa ggcgacacag gggtaagttt
301 gctctccatg cggcaatcgc agcaaagcta cattttgggg gcactccaac
351 cccaacgcgc tcgaatgagc ttgctgtgcg gcggtggctt gcaagttatt
401 gcaaggaaag gaggttggtt gatacacacg ctatacaagc gatcgctctg
451 gccactcctc tggtacttac gccaggggcc gctgaaatca ctgagcgagc
501 gatcctcaat agcgctgttt tcggtatgcg gagggcggct ctcgctgagg
551 cctctaaacc gactagtctc acataccaaa tggtatttga gcctcatcgg
601 ccgaggactt ggctcagagc ctggcggaaa gtggtgggtc tccctgattt
651 tcaggggtac tcgcccgtga aataggggtg ccttagggaa atagctggtg
701 tggacaccaa aattgtccgt ggagagcacc agtctatggc cgtattccct
751 agggaaggaa tctccaaacc ccggcgcatc ttccaagtct gtggaatggg
801 taatgggacc actttcggag ttcacaacaa ttccttaact aatttaagga
851 gaggtcttgt tgagagagtg ttctacgtgg aagatgcctg caaaaattta
901 gtcccgaccc ctcagcccct acctgggaag ttccaggagc tgaagtatct
951 ggctcgacgt gtcgcgcgca ttgctggtca tcatacccct atccccaggg
1001 aacactaccc tgggttgtat aagggcagga ggtaccaaat ttacgccgat
1051 gcggtcaaca gtttggcatc taatccggtt caccggagag attcctttct
1101 gaagactttc gtgaaagctg agaagattaa cttttcagcg aaaccagacc
1151 cggctcctag agttatccag cctagggatc cgagatataa tgtagaggta
1201 ggtagatatc ttaagcccta cgaacaccat ctatatagag ctctagatgt
1251 tgtttggaaa gggcctaccg tgcttaaggg atatactgtc agcgagattg
1301 gaagtattat gcactcgcat tggtcacaat tccagaaacc atgtgctgtg
1351 ggttttgaca tgaaacgatt tgatcagcac gtttctgtgg atgcgttgcg
1401 attcgagcat tctgtgtatg gaaggagttt ttgctctaag gagcttgaca
1451 gattgctcga gtggcaactc ctcaattccg gggttggaca cgccaatgac
1501 gggtacatta ggtacaaggt tgatggatgt aggatgagtg gggacgtgaa
1551 cactgctatg ggtaactgtc tactcgcttg tctcatcacc aaacacttat
1601 taaaaggcat cagatgtaga ctcatcaaca atggagacga ctgtgtcctc
1651 ttcttcaaca ctcctgatct agctgcggtc actgaaaggt tggctcactg
1701 gcttgatttt gggttccagt gtgttgtcga ggaaccagtc tatgaactgg
1751 aagaagttga gttttgccaa atgaagcccg tgtttgatgg tgaagagtgg
1801 gtgtgtgtgc gtaatgttca cgtgtcggta gcgaaggata cctactctat
1851 caacccttgg aataatgagt gtgacgctgg taggtggata cgggctattg
1901 gggaatgcgg tgaggcactc accgggggca tcccagtgct gaatgcatat
1951 tacaaggtgt tcaaaagagc gtacaaagca ccaggtaggg tgaaggagag
2001 ccttgcgttc gattccggta tgtaccggct ctcccaacga tgttctagaa
2051 gctttcatga accaacagaa gaagccaggg tgagtttctt caaagccttt
2101 ggggtggacc ctatggctca aatggccatt gaggagtttt atgactccat
2151 ggacattgag cttgagtttg ccccggaggg aaaacttgat gatatctctc
2201 tcttatggct tctccgcaat cgaatgatag cttcatagaa cttaatcctc
2251 acaatactgg tgatagtaag ggcgcaggta aagggaacag acaggcaaag
2301 aaagaagttg cacttcaagc agtgcacaaa gctaataagc acgatgaagc
2351 tgtttctggg ggttctttcg tttttgttgc tgataaagtt gaggttacca
2401 ttaacattaa cttttgacgt ggacttgaga accctccggg aaaattgctt
2451 tatcataacc acgcttagct tgtttgggtt ctttatcact gtcctgatta
2501 aggctgaatc agaacacttt cacttccaca cacacgacag tagtaagaca
2551 caaaatatag tagttaacac tggaaagtaa ccaaccacaa tgctgcagaa
2601 gaatgaccca gccgttcaac gtgcgtttaa tgcccattta ccttgggcaa
2651 tcaaacttaa gaacgatggg tgggctgctc tttctaaggg tcaaaagaga
2701 gcagccaata gatacgcggg tggaacccgt cctgttactt ctcaaattaa
2751 gctgtcaaca cttaaggtta cagctccggt ggccgcctcg atgcggactc
2801 gaaaccctgg agcaaacatt aggacggctg gaaaatcggt cactgtcgtc
2851 cattgcgagt ttgtgggcaa tatcgcccgg cagactggta gtgggctact
2901 ggtggtcgag aggacaatca accccagcaa cgtactcagc ttcccctggc
2951 tttctgtact tgctgccgga tatgagaagt accgcgtgtc atcactatct
3001 cttcgatatt ctccaacttg cgccacaaca acggagggca aggtcatctt
3051 ggcatttgat aaagatgctg cagatgcttc ccctacctcc aagagcgaca
3101 tgtataacca tgatggagca gttggagtct cgccctggga tagtgccatg
3151 ctgcaaatac cttgcgataa tgtggatagg tttattaatg attccagtag
3201 ttccgaccct aagcttgttg actttggtaa ggtggttgtt gccaattatg
3251 gccaatctga aggggatgtg gatgtgattg gagagctgtt cctgcaatac
3301 tccatcaccc tcaaaatccc ccaaggtatg gcgacaccta cacagtccgg
3351 ggtaggcatc tcatcggttg gcccctccct cttccgggtc caacttagag
3401 atgacacaca tgtgtttacc tgcaacggga ctggtcgctt cttgttcttc
3451 ttcaactcaa ccgttgatgc aacctccacc atcgctggga tggaggtgaa
3501 gcagaagagt tcaaccgacg acaaaggaga aacaacgata atggaactac
3551 tcgctactga atcaggtggt acgatagcaa tattggcggc cacaggcaca
3601 ctcacttggt gggcctgtag gaactaggtg tgtattgtat gggcctccgt
3651 gctgttaggg gcagtggaaa cgtcggtcta gccagccgtc ccctgggtag
3701 tgtgctccgt ctaagtacac cactactcgg tttccacaaa cgatcggact
3751 cccaaaatag tgtacattat gttgattgct tctttcctcc cttgtaatat
3801 ctcctctccc ctctcctcta cgcttggaat ccataaaatc cttcgggtgg
3851 gcttggattt cgggtacttg tttgaaatac cctcacaacc gccatagttg
3901 tgaggcagcc c