Sequence of DPV Papaya ringspot virus
Papaya ringspot virus genes for HC, P3 & C1 protein
ACC No: X96537
Dated: 1996-03-18 | Length: 3006 | CRC: -1834201167
!!NA_SEQUENCE 1.0
ID PRVHCP3CI standard; DNA; VRL; 3006 BP.
XX
AC X96537;
XX
SV X96537.1
XX
DT 18-MAR-1996 (Rel. 47, Created)
DT 18-MAR-1996 (Rel. 47, Last updated, Version 1)
XX
DE Papaya ringspot virus genes for HC, P3 & C1 protein
XX
KW cI gene; HC gene; P3 gene; polypeptide.
XX
OS Papaya ringspot virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
XX
RN [2]
RA Liu J.;
RT "Studies on the genome structures of two potyviruses (papaya ringspot
RT virus, soybean mosaic virus) and the genetic engineering strategies for
RT virus resistance in transgenic plants";
RL Unpublished.
XX
RN [3]
RP 1-3006
RA Liu J.;
RT ;
RL Submitted (08-MAR-1996) to the EMBL/GenBank/DDBJ databases.
RL J. Liu, Institute of Microbiology, Chinese Academy of Sciences, Beijing
RL 100080, PROC
XX
DR SPTREMBL; Q85025; Q85025.
XX
FH Key Location/Qualifiers
FH
FT source 1. .3006
FT /db_xref="taxon:12205"
FT /organism="Papaya ringspot virus"
FT /strain="SM"
FT /clone_lib="lambda ZAP-II"
FT CDS <1. .>3006
FT /codon_start=1
FT /db_xref="SPTREMBL:Q85025"
FT /note="polypeptide"
FT /gene="HC, P3 and CI"
FT /product="HC, P3 and CI proteins"
FT /protein_id="CAA65382.1"
FT /translation="FTCDNQLDRNGNFLWGERQYHAKRFFANYFEKIDHSKGYEHYSQR
FT QNPNGIRKIAIGNLIFSTNLERFRQQMVEHHIDQGPITRECIALRNNNYVHVCSCVTLD
FT DGTPATSELKTPTKNHIVLGNSGDPKYVDLPTLESDSMYIAKRGYCYMNIFLAMLINIP
FT ENEAKDFTKRVRDLVGSKLGEWPTMLDVATCANQLVIFHPDAANAELPRILVDHRQKTM
FT HVIDSFGSIDSGYHILKANTVNQLNQFAREPLDSEMKHYIVGGEFDPTTSCLHQLIRVI
FT YKPHELRNLLRNEPYLIVIALMSPSVLLTLFNSGAIEHALNYWIKRDQDVVEVIVLVEQ
FT LCRKVTLARTILEQFNEIRQNARDIHELMDRNNKPWISYDRSLELLSVYANSHLTDEGL
FT SKQGFSTLDPRLREAVEKTYAALLQEEWRALSLFQKLHLRYFAFKSQPSFSEYLKPKGR
FT ADLKIVYDFSPKYCVHEVGKALLQPIKAGAEVASRVINGCGTFIRKSAARGCAYIFKDL
FT FQFVHVVLVLSILLQIFRSAQGIATEHIQLKQAKAEVEKQKDFDRLEALYAELCVKGGE
FT QPTREEFLDFVIEREPRLKDQLYNLIYIPVIHQAKSNNEKKLEQVIAFITLILMMIDVD
FT KSECVYRILNKFKGVINSSNTNVYHQSLDDIRDFYEDKQLTIDFDITGENQINRGPIDV
FT TFEKWWDNQLSNNNTIGHYRIGGTFVEFSRTNAATVASEIAHSPEREFLIRGAVGSGKS
FT TNLPFLLSKHGNVLLIEPTRPLCENVCKQLRGDAFHCNPTIRMRGLTAFGSTNITIMTS
FT GFALHYYAHNIQQLRLFDFIIFDECHVIDSQAMAFYCLMEGNAIEKKILKVSATPPGRE
FT VEFSTQFPIKIVTEQSISFKQLVDNFGTGANSDVTALADNILVYVASYNEVEQLSKLLS
FT DKGYLVTKIEGRTMKVGKTEISTSGTKSKKHFIVATNIIENGVTLDIEAVIDFGLKVVP
FT EMDSDNRMIRYSK"
FT mRNA <1. .792
FT /gene="HC"
FT /product="HC protein"
FT mRNA 793. .1983
FT /gene="P3"
FT /product="P3 protein"
FT mRNA 1984. .>3006
FT /gene="CI"
FT /product="CI protein"
XX
SQ Sequence 3006 BP; 939 A; 563 C; 678 G; 826 T; 0 other;
X96537 Length: 3006 December 21, 2001 16:04 Type: N Check: 8982 ..
1 tttacgtgtg ataatcaatt ggacagaaat ggaaatttct tatggggtga
51 gagacaatac cacgccaaaa gattctttgc taattacttt gagaagattg
101 atcacagtaa gggctatgag cactatagtc aacgccaaaa cccaaatggc
151 attcgaaaga ttgcaatcgg taacctaata ttctccacaa atttagagag
201 gtttcgacag caaatggtcg aacatcatat tgatcaagga ccaatcaccc
251 gtgagtgtat agctctgcgc aacaataatt acgttcatgt atgtagctgc
301 gtgaccttag atgatggaac tccagcaaca agtgaattga aaacacccac
351 caagaatcac attgttcttg ggaattctgg agatcctaaa tatgttgatt
401 tgccaactct tgagtcagat tcaatgtata tagctaagag aggttattgc
451 tacatgaaca tcttcctggc gatgctcata aacatacctg agaatgaggc
501 gaaggacttt acaaagaggg ttcgcgatct tgtgggttct aaacttggag
551 agtggccaac gatgttagat gtcgcgacat gtgccaatca attggttatt
601 ttccatcccg atgcggccaa cgcggaattg ccacgaatct tagtggatca
651 ccgacagaaa acaatgcatg tcattgattc atttggatcg atagattctg
701 gatatcatat attgaaagca aacacagtga atcagctaaa tcagtttgct
751 agagagccac tcgatagtga aatgaagcac tacattgttg gtggagaatt
801 cgatccaact actagttgct tgcatcagct aatacgcgtc atttacaagc
851 ctcatgaact ccgaaatcta ctcagaaatg agccgtatct aatagtgatt
901 gcactgatgt caccaagcgt actcttaact ctatttaata gtggtgcaat
951 tgagcatgca ttgaattatt ggatcaaaag agatcaagat gtcgtcgagg
1001 ttattgtttt agtagagcaa ttgtgcagga aggtgacgct tgctagaaca
1051 atcctggagc agtttaacga aattcgccag aacgcaagag acatacatga
1101 gctaatggat cgaaataata aaccttggat ttcatatgat cgatcattag
1151 agctattgag tgtgtacgcg aattcgcatt tgacggatga aggcctgtct
1201 aagcaaggat tttcaacact ggatcctcga ttgcgtgaag ctgttgaaaa
1251 aacctacgcc gctctcttgc aggaagagtg gcgtgcttta agtttgtttc
1301 aaaagttgca cttaaggtac tttgcattca aatcacaacc atctttttcc
1351 gagtatttaa agccaaaagg gcgcgcagat ttaaaaattg tgtacgactt
1401 ctcaccgaag tactgtgtac acgaggtcgg aaaagcattg ctacagccaa
1451 tcaaagctgg agctgaagtc gcgtcgcgtg tcataaacgg ttgtggaacg
1501 ttcattcgga aaagtgccgc aagaggctgt gcttacattt ttaaggacct
1551 tttccagttc gttcacgtag tattagtgtt aagcatttta ttacaaatat
1601 ttagaagcgc acaaggaatt gccacagagc acatacaatt aaagcaagca
1651 aaagcagagg tggaaaagca gaaagatttt gatcggctgg aagctttata
1701 cgctgagttg tgcgttaagg gtggcgaaca gccgacgcgt gaagaatttc
1751 tcgattttgt gatagagcgt gaaccaaggc tcaaggatca gctttacaac
1801 ttgatttaca taccagttat tcatcaagca aaatcgaaca atgaaaagaa
1851 actcgaacaa gtcattgcat ttatcacatt aattttgatg atgattgatg
1901 tggacaagag tgagtgcgtt tacagaattt taaacaagtt taaaggcgta
1951 ataaattcta gcaatacaaa cgtttatcat cagtctttgg atgacattcg
2001 ggacttctat gaagataagc aattgactat tgactttgac atcactgggg
2051 aaaatcaaat taatcgtggg cctatagatg tcacgttcga gaagtggtgg
2101 gacaatcaac tgtccaataa caacacaatt ggtcattacc gaattggagg
2151 aacattcgtt gagttctcac gaacgaacgc agccactgtg gctagtgaaa
2201 tagctcatag tcctgaacgg gaattcctaa ttcggggagc ggttggtagt
2251 ggtaaatcaa cgaatcttcc gttcttactt agcaagcatg ggaatgtgtt
2301 gttaatagag cccaccaggc ccctttgcga aaatgtttgc aagcaactgc
2351 gtggtgacgc gtttcattgt aatccaacca tccgcatgcg tggactaacg
2401 gcttttggtt cgaccaatat cacaatcatg acgagcggat ttgccttgca
2451 ttattatgct cataacattc aacaattaag gctctttgat ttcataatct
2501 ttgatgaatg tcatgtcata gatagccaag caatggcctt ttattgtctg
2551 atggagggta acgcgattga gaagaaaatt cttaaagttt ctgccacgcc
2601 acctgggcgt gaggttgagt tctcaacgca attcccaata aaaattgtca
2651 ctgagcagtc tataagcttt aagcagttgg tcgataattt cggtactggt
2701 gcgaatagtg atgtgactgc cttggcggat aacatactgg tctatgttgc
2751 gagctataat gaagtggaac aactaagcaa gcttttgtcc gacaaaggct
2801 acttagtaac caaaattgag gggagaacaa tgaaggttgg aaaaactgaa
2851 atttccacta gcggcacaaa gtccaagaag cactttatag ttgccacaaa
2901 cattatagag aatggcgtca cacttgatat agaagccgtt attgactttg
2951 gattgaaagt agtgcctgag atggactcag acaatcgcat gattaggtat
3001 tcgaag