Sequence of DPV Shallot yellow stripe virus

Shallot yellow stripe virus RNA encoding polyprotein precursor

ACC No: Y11747

Dated: 2006-11-14 | Length: 1011 | CRC: -1905191013

                
ID   Y11747; SV 1; linear; genomic RNA; STD; VRL; 1011 BP.
XX
AC   Y11747;
XX
DT   07-SEP-1997 (Rel. 52, Created)
DT   14-NOV-2006 (Rel. 89, Last updated, Version 3)
XX
DE   Shallot yellow stripe virus RNA encoding polyprotein precursor
XX
KW   coat protein; nuclear inclusion B; polyprotein.
XX
OS   Shallot yellow stripe virus
OC   Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC   Potyvirus.
XX
RN   [1]
RA   van der Vlugt R.A.A.;
RT   ;
RL   Unpublished.
XX
RN   [2]
RP   1-1011
RA   van der Vlugt R.A.A.;
RT   ;
RL   Submitted (10-MAR-1997) to the EMBL/GenBank/DDBJ databases.
RL   R.A.A. Van Der Vlugt, DLO-Research Inst. for Plant Protection, Virology,
RL   P.O. Box 9060, 6700 GW Wageningen, NETHERLANDS
XX
FH   Key             Location/Qualifiers
FH
FT   source          1. .1011
FT                   /organism="Shallot yellow stripe virus"
FT                   /specific_host="Allium cepa L. var. ascalonicum (shallot)"
FT                   /lab_host="Allium cepa L. var. cepa (onion)"
FT                   /strain="Ac127I"
FT                   /mol_type="genomic RNA"
FT                   /db_xref="taxon:62059"
FT   CDS             <1. .804
FT                   /codon_start=1
FT                   /product="polyprotein precursor"
FT                   /db_xref="GOA:O41330"
FT                   /db_xref="InterPro:IPR001592"
FT                   /db_xref="UniProtKB/TrEMBL:O41330"
FT                   /protein_id="CAA72418.1"
FT                   /translation="PTPSYVSYQATESEDAANVNTDKQVGKNKDKDRDVDVGTSGEFSV
FT                   PKVKMLSDKMRLPRIGKKVVLNGKHLLSYKPDQIDLYNTRATHAQFKTWYEAVKLEYEL
FT                   TDEQMKIVMNGLMVWCIENGTSQNLTGVWTMMDGDNQMEYPLSPIIDNAKPTFRQIMAH
FT                   FSDAAEAYIEYRNATEKYMPRYGLQRNLREYSLARYAFDFYEMNSKTPIRAKEAHMQMK
FT                   AAAVRGAANRMFGLDGNIGTDDENTERHTAADVNKDHHTLLGLRM"
FT   mat_peptide     <1. .27
FT                   /codon_start=1
FT                   /product="nuclear inclusion B"
FT   mat_peptide     28. .801
FT                   /product="coat protein"
XX
SQ   Sequence 1011 BP; 340 A; 183 C; 241 G; 247 T; 0 other;

y11747 Length: 1011  14-NOV-2006  Type: N  Check: 8108  ..

       1  ccaacaccga gttatgtgtc atatcaagcg acagaatcag aagacgctgc
      51  gaatgtgaac actgacaagc aagtcggaaa gaacaaggat aaggacagag
     101  atgttgatgt tggcacatca ggtgagtttt cagttccgaa ggtgaaaatg
     151  ttatcagata aaatgcgttt gccacgaatt ggaaagaaag tggtactcaa
     201  cggcaaacat cttttatctt ataaacctga ccaaattgat ttgtataaca
     251  cacgagccac acacgcacag tttaagacgt ggtacgaggc ggtgaaacta
     301  gaatatgaat tgacggatga acaaatgaaa atagtcatga atggtttgat
     351  ggtatggtgc attgagaacg gcacatcaca aaatttgacg ggggtttgga
     401  cgatgatgga tggcgacaac caaatggagt acccactcag tcctattatt
     451  gacaatgcta agcctacatt cagacaaata atggcacatt tcagtgacgc
     501  agctgaagcg tacattgaat ataggaatgc cacagaaaaa tacatgcctc
     551  ggtatggact tcagcgaaac ttaagagaat acagcctagc acgttacgca
     601  ttcgactttt atgagatgaa ttcaaagacg ccgatccgcg cgaaggaagc
     651  tcacatgcag atgaaagcgg cagcggttag aggggcagct aaccgtatgt
     701  ttggcttgga tggtaacata ggcaccgatg atgagaacac agaacgacat
     751  acagcagctg atgtgaataa ggatcatcac acgctgctcg gtcttcgtat
     801  gtaacaaaca tatatatatt taatatatag tgtcgtgcat tatctttcgt
     851  tatatttgaa tatgagcaaa catagtgtgg ttacaccacc gtttgtggca
     901  tagtatatga tataacatcg ctagcactat ttgcaccatg atactcagtg
     951  tggtggtacc acgatgaaag agttgagtgt tgcacgtttt gttagggaga
    1001  caaaaaaaaa a