Sequence of DPV Galinsoga mosaic virus
Galinsoga mosaic virus, complete genome
ACC No: Y13463
Dated: 2005-04-18 | Length: 3803 | CRC: -581874024
!!NA_SEQUENCE 1.0
ID GMCVCG standard; genomic RNA; VRL; 3803 BP.
XX
AC Y13463;
XX
SV Y13463.1
XX
DT 20-JUN-1997 (Rel. 52, Created)
DT 18-APR-2005 (Rel. 83, Last updated, Version 5)
XX
DE Galinsoga mosaic virus, complete genome
XX
KW capsid protein; complete genome; movement protein; replicase.
XX
OS Galinsoga mosaic virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Tombusviridae;
OC Carmovirus.
XX
RN [1]
RX DOI; 10.1007/s007050050277.
RX MEDLINE; 98166875.
RX PUBMED; 9505975.
RA Ciuffreda P., Rubino L., Russo M.;
RT "Molecular cloning and complete nucleotide sequence of Galinsoga mosaic
RT carmovirus genomic RNA";
RL Arch. Virol. 143(1):173-180(1998).
XX
RN [2]
RP 1-3803
RA Russo M.;
RT ;
RL Submitted (29-MAY-1997) to the EMBL/GenBank/DDBJ databases.
RL M. Russo, Centro Studi del CNR sui Virus e le Virosi della Colture
RL Mediterranee, Via Amendola 165/A, I70126 Bari, ITALY
XX
FH Key Location/Qualifiers
FH
FT source 1. .3803
FT /db_xref="taxon:60714"
FT /mol_type="genomic RNA"
FT /organism="Galinsoga mosaic virus"
FT /lab_host="Nicotinana tabacum"
FT CDS 43. .672
FT /db_xref="UniProt/TrEMBL:O12300"
FT /note="ORF1"
FT /product="replicase"
FT /protein_id="CAA73862.1"
FT /translation="MGAISKISKISSFVVAGIVAYKVGKATYNAFRYRNQESITAARDL
FT QAAVEAVEEQPEFGSVEECLEETPASQSERTTIQNEGDLAKMPVSRKRRIRNRKHGRFV
FT SYLVNEAKAEYGLPKPTEAYRLMVGGFLNRLCKEWGVVTSHTHQAVSIALPLVFVPTKF
FT DVMGKAMCATTRTNQLIGENSTDQATGWFDNVLGIGGGVGLRFLGK"
FT CDS 43. .2232
FT /db_xref="GOA:O12301"
FT /db_xref="InterPro:IPR002166"
FT /db_xref="InterPro:IPR005829"
FT /db_xref="InterPro:IPR007094"
FT /db_xref="InterPro:IPR007095"
FT /db_xref="UniProt/TrEMBL:O12301"
FT /note="readthrough protein"
FT /note="ORF2"
FT /transl_except=(pos:670. .672,aa:OTHER)
FT /product="replicase"
FT /protein_id="CAA73863.1"
FT /translation="MGAISKISKISSFVVAGIVAYKVGKATYNAFRYRNQESITAARDL
FT QAAVEAVEEQPEFGSVEECLEETPASQSERTTIQNEGDLAKMPVSRKRRIRNRKHGRFV
FT SYLVNEAKAEYGLPKPTEAYRLMVGGFLNRLCKEWGVVTSHTHQAVSIALPLVFVPTKF
FT DVMGKAMCATTRTNQLIGENSTDQATGWFDNVLGIGGGVGLRFLGKXGCLERRLGFSTT
FT VSRGSHPDLVVKPSGRPEKQRQLSAIVDSWGRKPLVFTITRLANLRRGMIERMYYVERD
FT KNLVEPPAPSVDFRLPHFSSAFKKVIGRHTPVTRQAFVEFYRGRKRTIYEKAVESLSAA
FT PVTHRDARLKTFVKAEKLVLSRKPDPAPRIIQPRAPRYNVELGVYLRPFEHKAFRAVER
FT VFGSPTIMKGYTAEEQASIAREKWDRFSKPVAIGLDASRFDQHVSVAALKWEHKLYHHA
FT FNHDKTLKKLLKWQIHNEGTAFASDGCIKYKKTGCRMSGDMNTSLGNCLIMCGMVYDLL
FT VTHDIDAELLNNGDDCVLICERSEEAHLLEVIPQYFRQYGFTMEVEKPVHIFEKLEFCQ
FT TQPVYVDGKWIMVRKPNPAMSKDLTCLLPIQNENNFKEWLSAVSECGLALTGGVPLWQN
FT FYQACNLGAARTGFTKSGLFTESGLAYASRGLHRRFSEPSAETRHSFYLAFGITPDLQL
FT ALEKELDSKIMNEWTMIPRDTRQRTYYSTISNELT"
FT CDS 2219. .2428
FT /db_xref="UniProt/TrEMBL:O12302"
FT /note="ORF3"
FT /product="movement protein"
FT /protein_id="CAA73864.1"
FT /translation="MNSHDDGNNSDPSPGNYSRNRGVRNKGMSGVKEQAVGQEIQKQHQ
FT GRGNSTMVNVADTQTITVTNNFNF"
FT CDS 2428. .2604
FT /db_xref="UniProt/TrEMBL:O12303"
FT /note="ORF4"
FT /product="movement protein"
FT /protein_id="CAA73860.1"
FT /translation="MKYCRCSDTAPTDHITLLFVIFILSGLILSLCTNITSNNYENHTT
FT ENKTQWITIGGQQ"
FT CDS 2546. .3568
FT /db_xref="GOA:O12304"
FT /db_xref="HSSP:2TBV"
FT /db_xref="InterPro:IPR000937"
FT /db_xref="UniProt/TrEMBL:O12304"
FT /note="ORF5"
FT /product="capsid protein"
FT /protein_id="CAA73861.1"
FT /translation="MKTTQPKTKPSGSPLADNNKSYRSNRTNKQKTQDQSAPVAISRQV
FT RGSVPKLAGNRPFTFGHRELIATISNTVLFQVNGGVGGNLYRLNPANSSLFTWLPSISA
FT NFDQYRFLKVWLEYAPFCSTTEAGRVGLYFDKDSQDPEPTDRVELANFGHLSETVAWSP
FT IELHLPTDNVVRYMSDSSVSDPKLIDLGQIGFATYGGGSTNAIGDLFIHYTIELQQPQP
FT TYFAVQTLQSGNGSSSAGPTVAAVTASTGTSTTLTFRSPGTYLVNLFQRSLTFTSIVAT
FT GGTVINSQATLQSGATAYCSQHNVTVSTPGGALVATGTGFGNYNFQVTRARVQNRCDLL
FT "
XX
SQ Sequence 3803 BP; 1061 A; 876 C; 954 G; 912 T; 0 other;
Y13463 Length: 3803 May 10, 2005 10:10 Type: N Check: 9457 ..
1 ggtaaagacg ccaatctttg ctagtcaacc aaagactata acatgggggc
51 tatatcgaag atttctaaga ttagttcgtt cgtagtggca ggcattgttg
101 catataaggt tggtaaagct acatacaatg cttttaggta caggaaccag
151 gaatctatta cagcagcccg ggacctccaa gcagcagtgg aagctgtgga
201 agaacaaccg gaattcggta gtgtagaaga atgtcttgag gaaactccag
251 cttctcaatc tgaaagaacc accattcaga atgaggggga cctagccaaa
301 atgcctgtca gtcgtaaacg tcgtattcga aacaggaaac acggtcggtt
351 tgttagctat ctagttaacg aggctaaggc agagtacgga ctacccaaac
401 caactgaagc atataggcta atggttggtg gatttctcaa tcgattatgt
451 aaagaatggg gagtggtgac tagccacaca catcaagcgg tttctattgc
501 cctgccactt gtcttcgttc cgacgaagtt cgacgtgatg gggaaagcta
551 tgtgtgccac tacccggacg aaccaactca taggggagaa ttccactgat
601 caagctacag ggtggtttga caatgttctg ggaattggag gcggcgttgg
651 cctccggttc ctgggcaaat aggggtgcct tgaaaggagg ctagggttct
701 ctaccacagt ttctcgtggt agtcaccccg atctggtggt caaaccatca
751 gggcgcccgg agaaacagcg gcagttatcc gctatagtgg actcatgggg
801 tcgcaaacca ttggtgttca caataactcg tctcgccaac ttgcggaggg
851 gcatgattga gcgaatgtat tatgtagagc gagacaaaaa tctcgtggaa
901 cccccagcac ctagtgtgga tttccgtctt ccacacttct cgtctgcgtt
951 caagaaggta attggtcgtc ataccccggt aactcgacaa gcttttgttg
1001 aattttatag gggcaggaag agaaccattt acgagaaagc ggtggagagc
1051 ttgtccgcag ctccagtaac ccaccgagat gcgagactaa agacgtttgt
1101 caaggcagag aagctggtat tgtcgcgcaa gcccgatcca gctcctcgga
1151 taatccaacc gagggcgcca cgatataacg ttgagttagg ggtgtatttg
1201 agaccgttcg aacataaagc gtttagagca gtagaacgcg tattcgggag
1251 tccaactatc atgaaaggct acacagcaga ggaacaagca tctatagcga
1301 gagaaaagtg ggatcgcttc tccaaaccgg tggcgattgg tttggatgct
1351 agtaggttcg accagcatgt ttctgttgcg gctttaaaat gggagcacaa
1401 attgtaccat catgctttca atcatgataa aactctaaag aagttattaa
1451 aatggcaaat tcacaatgag ggaaccgctt tcgctagcga tgggtgtatc
1501 aagtataaga agactgggtg tcgaatgagt ggtgacatga atacaagtct
1551 cgggaactgt ttgattatgt gcggtatggt ttacgacctc ttggtaacac
1601 acgatataga cgcagaattg cttaacaacg gtgatgactg tgtactcata
1651 tgcgagaggt cggaggaagc gcatttacta gaagtcattc cccagtattt
1701 ccgtcaatac ggttttacaa tggaggtgga aaaacccgtg cacattttcg
1751 agaagctcga gttttgtcaa actcagccag tctatgtcga tggaaagtgg
1801 attatggtga ggaaacccaa ccctgctatg agtaaggacc tcacgtgttt
1851 attgccaatt caaaatgaaa acaacttcaa ggagtggcta agtgcagtta
1901 gcgagtgtgg gttagcttta acgggtggag tcccgttgtg gcaaaacttc
1951 taccaagcct gcaacttagg agcggcccgc accggcttca cgaaatctgg
2001 tctcttcaca gagtccggtt tagcctacgc atcccgtggt ttacacagga
2051 ggtttagtga acctagtgcg gaaactcgcc attcattcta tcttgctttt
2101 ggcatcacgc ctgacctcca attggcgttg gagaaagaac tcgacagcaa
2151 gatcatgaac gagtggacca tgattccccg tgatacgcgc caacgtacct
2201 actactctac aatcagcaat gaactcacat gatgacggaa acaatagtga
2251 tccatctccg ggaaattaca gtcgaaatcg gggcgtacga aataagggta
2301 tgtcaggagt caaagagcaa gccgttggac aagagatcca gaaacagcac
2351 cagggacgag gtaatagcac aatggtcaat gttgcagata cccaaaccat
2401 aacggtgaca aacaacttca atttctgatg aagtactgtc ggtgcagtga
2451 tacggcgcca accgatcata tcactcttct ctttgtaatc ttcatactgt
2501 caggacttat tttatctctg tgtaccaata taacatcaaa caattatgaa
2551 aaccacacaa ccgaaaacaa aacccagtgg atcaccattg gcggacaaca
2601 ataaaagcta tcgttccaat cgaaccaaca agcagaagac acaggaccag
2651 tcagcacctg ttgccatctc acgccaagtg agggggagcg ttcctaaact
2701 cgccggcaac agaccgttca catttggcca tcgagaacta atcgccacca
2751 tatccaatac tgtactcttc caagtgaatg gcggagtggg gggtaatctc
2801 taccgactta accccgctaa ttcctcccta ttcacctggt tgcctagcat
2851 atcggcgaac ttcgaccagt acagattctt aaaggtctgg cttgaatatg
2901 ccccattttg ctcaaccact gaggctggca gggtggggtt gtacttcgac
2951 aaagactcac aagatcctga gcctactgat cgcgtggaat tagcgaactt
3001 tggtcatctt agtgagaccg tggcatggtc tcccatcgag ttacatctac
3051 cgaccgacaa tgtggtgcgg tatatgagcg attcttccgt ttcagatcct
3101 aagttgatag atctggggca gatcgggttc gccacttatg gtggcggatc
3151 taccaatgca attggggact tgttcataca ttacaccata gaactgcagc
3201 aacctcagcc aacctacttt gcagtccaga ctctccaatc tggaaatggc
3251 tctagtagtg ccggccccac tgtagccgct gtaacggcta gcactggcac
3301 cagtactact cttacctttc gaagcccggg aacgtatctc gtcaatcttt
3351 tccagcggtc gcttactttc acgagtatag tggcaactgg agggaccgtt
3401 ataaattccc aggctaccct gcaatcaggc gcgacggcat actgcagcca
3451 acataatgta actgtatcaa ctccaggtgg ggcactagtg gcaacgggga
3501 cgggatttgg aaactataat ttccaggtca ctcgtgctag ggtacaaaac
3551 aggtgtgatc ttctctagag gaagatgctt gggggtgttc ccctaaagtt
3601 cagaatggtc tatcagggag caggcacttt tccggctttg gcgagtcgtc
3651 tccacttgta tacgaacagt gaggggaaaa gttatctgat agaagaatga
3701 accatggaca aggacactct aaaccaccac taagaagcta tagggaaacc
3751 ttgctgaggg cagtgagtgg tcgtaccaga acgaatatgg ctttgccccg
3801 ccc