Sequence of DPV Potato virus Y
Potato virus Y (strain O) CI, 6K2, VPg, NIa-Pro, NIa gene
ACC No: Z29526
Dated: 2006-11-14 | Length: 1784 | CRC: -952812350
ID Z29526; SV 1; linear; genomic DNA; STD; VRL; 1784 BP.
XX
AC Z29526;
XX
DT 24-JAN-1994 (Rel. 38, Created)
DT 14-NOV-2006 (Rel. 89, Last updated, Version 3)
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DE Potato virus Y (strain O) CI, 6K2, VPg, NIa-Pro, NIa gene
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KW 6 kd protein; 6K2 gene; cI gene; Cytoplasmic inclusion protein;
KW genome-linked protein; nia gene; polyprotein; protease;
KW Small nuclear inclusion protein; VPg gene.
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OS Potato virus Y
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Potyviridae;
OC Potyvirus.
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RN [1]
RP 1-1784
RA Welnicki M.A., Baulcombe D.C.;
RT "The nucleotide sequence of the central fragment of potato virus Y (O
RT strain) genome encoding 6K2 and VPg proteins.";
RL Unpublished.
XX
RN [2]
RP 1-1784
RA Welnicki M.A.;
RT ;
RL Submitted (19-JAN-1994) to the EMBL/GenBank/DDBJ databases.
RL Welnicki M. A., Institute of Biochemistry and Biophysics, Department of
RL Protein Biosynthesis, ul. Pawinskiego 5A, Warszawa, Poland, 02-106
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FH Key Location/Qualifiers
FH
FT source 1. .1784
FT /organism="Potato virus Y"
FT /strain="O"
FT /isolate="British"
FT /mol_type="genomic DNA"
FT /clone="pPVY15"
FT /db_xref="taxon:12216"
FT mat_peptide 1. .850
FT /partial
FT /codon_start=2
FT /gene="CI"
FT /product="Cytoplasmic inclusion protein"
FT /function="RNA helicase"
FT /note="putative"
FT mat_peptide 851. .1006
FT /gene="6K2"
FT /product="6 kD protein"
FT /note="putative"
FT mat_peptide 1007. .1570
FT /gene="VPg"
FT /product="Genome-linked protein"
FT /note="This protein constitutes the N-terminal half of the
FT NIa protein; putative"
FT mat_peptide 1571. .1784
FT /partial
FT /gene="NIa-Pro"
FT /product="protease"
FT /note="This protein constitutes the C-terminal region of
FT the NIa protein; putative"
FT mat_peptide 1007. .1784
FT /partial
FT /gene="NIa"
FT /product="small nuclear inclusion protein"
FT CDS <1. .>1784
FT /codon_start=2
FT /product="polyprotein"
FT /db_xref="GOA:Q85258"
FT /db_xref="HSSP:P04517"
FT /db_xref="InterPro:IPR001730"
FT /db_xref="InterPro:IPR013648"
FT /db_xref="UniProtKB/TrEMBL:Q85258"
FT /protein_id="CAA82642.1"
FT /translation="RLGRVGRFKKGVALRIGHTEKGIIEIPSMIATEAALACFAYNLPV
FT MTGGVSTSLIGNCTVRQVKTMQQFELSPFFIQNFVAHDGSMHPVIHDILKKYKLRDCMT
FT PLCDQSIPYRASSTWLSVSEYERLGVALEIPKQVKIAFHIKEIPPKLHEMLWETVVKYK
FT DVCLFPSIRASSISKIAYTLRTDLFAIPRTLILVERLLEEERVKQSQFRSLIDEGCSSM
FT FSIVNLTNTLRARYAKDYTADNIQKLEKVRSQLKEFSNLDGSACEENLIKRYESLQFVH
FT HQAATSLAKDLKLKGTWKKSLVAKDLIIAGAVAIGGIGLIYSWFTQSVETVSHQGKNKS
FT KRIQALKFRHARDKRAGFEIDNNDDTIEEFFGSAYRKKGKGKGTTVGMGKSSRRFINMY
FT GFDPTEYSFIQFVDPLTGAQIEENVYADIRDIQERFSEVRKKMVENDDIEMQALGSNTT
FT IHAYFRKDWSDKALKIDLMPHNPLKVCDKTNGIAKFPERELELRQTGPAVEVDVKDIPA
FT QEVEHEAKSLMRGLRDFNPIAQTVCRLKVSVEYGTSEMYGFGFGAYIIANHHLFRSYNG
FT SMEVRSMHGTFRVKNLHS"
XX
SQ Sequence 1784 BP; 570 A; 340 C; 426 G; 448 T; 0 other;
z29526 Length: 1784 14-NOV-2006 Type: N Check: 7331 ..
1 aaggctgggt cgtgttggac gcttcaagaa aggagtagca ttgcgcattg
51 gacacactga gaagggaatt attgaaattc caagcatgat cgctactgag
101 gcggcacttg cttgctttgc atataacttg ccagtgatga caggaggcgt
151 ctcaactagt ctgattggca attgtactgt gcgccaggtt aaaacaatgc
201 agcaatttga attgagtccc ttctttatcc agaatttcgt tgctcatgat
251 ggatcaatgc atcctgtcat acatgacatt cttaaaaagt ataaactccg
301 agattgtatg acacctttgt gcgatcagtc tataccatac agggcatcga
351 gcacttggtt atcggttagt gaatatgagc gacttggagt ggccttagaa
401 attccaaagc aagtcaaaat tgcattccat atcaaagaga tccctcctaa
451 gctccacgaa atgctttggg aaacggttgt caagtacaaa gacgtttgct
501 tatttccaag cattcgagca tcgtccatca gcaaaatcgc atacacattg
551 cgtacagacc tcttcgccat cccaagaact ctaatattgg tggagagatt
601 gcttgaagag gagcgagtga agcagagcca attcagaagt ctcatcgatg
651 aagggtgctc aagcatgttt tcaattgtca acttgaccaa cactctcagg
701 gccagatatg caaaagatta caccgcagac aacatacaaa aacttgagaa
751 agtgagaagc caattaaaag aattctcaaa tttggatggt tctgcatgtg
801 aggaaaattt aataaagagg tatgagtctt tgcagttcgt ccatcaccaa
851 gctgcgacgt cacttgcaaa ggatctcaag ttgaagggga cttggaagaa
901 gtcattagtg gctaaagact tgatcatagc aggcgctgtt gcaattggtg
951 gaataggact catatatagt tggttcacac aatcagttga gactgtgtct
1001 caccaaggga aaaataaatc caagagaatc caagccttga agtttcgcca
1051 tgctcgtgac aaaagggctg gctttgaaat tgacaacaat gatgacacaa
1101 tagaggaatt ctttggatct gcatacagga aaaagggaaa aggtaaaggt
1151 accacagttg gtatgggcaa gtcaagcagg aggttcatta acatgtacgg
1201 gttcgaccca acagagtact cattcatcca attcgttgat ccactcactg
1251 gggcacaaat agaagagaat gtctatgctg acattagaga tattcaagag
1301 agatttagtg aagtgcgaaa gaaaatggtt gagaatgatg acattgaaat
1351 gcaagccttg ggtagtaaca cgaccataca tgcatacttt aggaaagatt
1401 ggtctgacaa agctttgaag attgatttaa tgccacataa cccactcaaa
1451 gtttgtgaca aaacaaatgg cattgccaaa tttcctgaga gagagctcga
1501 actaaggcag actgggccag ctgtagaagt cgacgtgaag gacataccag
1551 cgcaggaggt ggagcatgaa gctaaatcgc tcatgagagg cttgagagac
1601 ttcaacccaa ttgcccaaac agtttgtagg ctgaaagtat ctgttgaata
1651 tgggacatca gagatgtacg gttttggatt tggagcatac ataatagcga
1701 accaccattt gtttaggagt tacaatggtt ccatggaggt gcgatccatg
1751 cacggtacat tcagggtgaa gaatctacac agtt