Sequence of DPV Beet soil-borne virus
Beet soil-borne virus RNA1 for 145 kDa protein, and 204 kDa protein.
ACC No: Z97873
Dated: 1998-01-16 | Length: 5834 | CRC: -1702692168
!!NA_SEQUENCE 1.0
ID BSBVRNA1 standard; RNA; VRL; 5834 BP.
XX
AC Z97873;
XX
SV Z97873.1
XX
DT 16-JAN-1998 (Rel. 54, Created)
DT 16-JAN-1998 (Rel. 54, Last updated, Version 1)
XX
DE Beet soil-borne virus RNA1 for 145 kDa protein, and 204 kDa protein.
XX
KW 145 kDa protein; 204 kDa protein.
XX
OS beet soil-borne virus
OC Viruses; ssRNA positive-strand viruses, no DNA stage; Furovirus.
XX
RN [1]
RA Koenig R., Loss S.;
RT "Beet soil-borne virus RNA 1: genetic analysis enabled by a starting
RT sequence generated with primers to highly conserved helicase-encoding
RT domains";
RL J. Gen. Virol. 78:3161-3165(1997).
XX
RN [2]
RC Revised by author 28-JUL-97
RP 1-5834
RA Koenig R.;
RT ;
RL Submitted (17-JUL-1997) to the EMBL/GenBank/DDBJ databases.
RL Koenig R., Biologische Bundesanstalt fuer Land- und Forstwirtschaft,
RL Institut Biochemie u. Pflanzenvirologie, Messeweg 11, Braunschweig, D38104,
RL Germany.
XX
DR SPTREMBL; O56790; O56790.
DR SPTREMBL; O93163; O93163.
XX
FH Key Location/Qualifiers
FH
FT source 1. .5834
FT /db_xref="taxon:46436"
FT /organism="beet soil-borne virus"
FT /strain="Ahlum"
FT 5'UTR 1. .129
FT CDS 130. .3942
FT /db_xref="SPTREMBL:O93163"
FT /product="145 kDa protein"
FT /function="putative virus replication"
FT /protein_id="CAB10763.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLSRVIDDNIKN
FT ALKANTKKKTVDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE
FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILTGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI
FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFTEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN
FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT GYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGSWAWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILENLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKI
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYWHFHCYERKSNGRSISVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQ"
FT CDS 130. .5466
FT /db_xref="SPTREMBL:O56790"
FT /note="putative readthrough protein"
FT /transl_except=(pos:3940. .3942,aa:OTHER)
FT /product="204 kDa protein"
FT /function="putative virus replication"
FT /protein_id="CAB10764.1"
FT /translation="MESTNILTQINRDDIIQAVLTTSASRTQSALHETLSRVIDDNIKN
FT ALKANTKKKTVDVKRNLSEEQVQYLCELYPERKIITSNSERGTHSMAAAMRKIETDLVL
FT SLFPKNSVIYDIGGNWATHAKCNDGRKVHCCCPILDYRDAQRKMTRMLNFHKFTSDSSE
FT IPPDIREKAEMIAEDNAIITANVREGDLNSSALNGRWFCQNKFEDCVFDPRDILTGKTA
FT KDNVMVYAMAIHSIYDINVYELATALQRKGIKRMVGTFLFSVDMLLGRKSGELPSVNGF
FT YKLEGEYIKYGFYDDPNCGYRHKFSSLKAYLTKTFVKAANGSVFYLELTDLRGDVMYFT
FT MTDATEARASGIMKDESFKCIPVDAKNKVVFPLFVVDETTDTLMFLERVLPKDFVHRAI
FT EYVNRCKENQLTVESIVSYLSSTNNAVIIGGSARKVEEKVDPSLLPMIASTLLVYSEMQ
FT RAKQKTVIQKLRIHVKNTVTIGDLLNHAFHKVFGAVGVGQLALQSFARWLKFFHGSGVI
FT EMNDLFMYVEIEDRIRLWSKKSREHEFFLTFDDLTEKSRLYEEYNEERRRISDKIIKEK
FT GLSSKDLSLEEDKEKTVDEILAWMEKSEDLKASELRSKLIGIRKNRARVDKRKFGEAHQ
FT VNTAVLQRFTEADDDHFSTCALNTPGKWWVDVLGEFLGKTLSEVCATNIVFSDIEPNDN
FT TEGFDTVEYADRDDMASDVETSISQCVESNDECVDEDGYSCDGDSKVEHSTLNSNYGAL
FT TPPPREEVKDSEEGVDVTVEDVSTDIIESHCDGRWALMAEDSDFAIDQKRSEALNIMEV
FT GYAKLPSKPDYLESDDFRMRAKKEFIWYLECKLVSDKSAMTDIVRDYVYNMYHNSLCEF
FT PKNSCFLSYEGDDNGSWAWGRKPVRLGHAYAVHFYAADWKTNCRLVSLSWNKDEEGNFV
FT GDKPVISTNSGVYMLCDLTFLMNEMIILENLQFSLKTRFQKHIPHVTLIDGVPGCGKST
FT HIVKEARLENQYVLTMGREAAAELRERFKTVRGSTEEQLKRVRTVDSFLMNDKDSRAKI
FT LHFDEALMAHAGMVYFCADNLSARTIICQGDSQQIPFINRVESITLEYAKLEITNVVEK
FT RLTYRSPLDVACFLTRKNFYWHFHCYERKSNGRSISVVGPRDGMTSNYSIPKKKGAQYL
FT TFTQSEKEDMVRYLGKGQWSVNTVHESQGKTYDDVILVRLKPTDNEIYPGGRKSKPYVV
FT VGTTRHRRSLVYYTRAEDILYRDITEMMSVQEGKLHKHLFTESTQXRCGSKYESITVSD
FT RPVSVPDVGAVEDLQVMYDIAFPGNSVIETYFDGYDVATGGLEIDIANIKYYPNKQKRM
FT WQEVRGLTPALRTAMPEKRQSGLIESVLALNKRNMAAPRLQESVNEFEIIENVISKAKA
FT VFFDEKFIDASPMNSVSNCQKWWDKQSVTAQKQMLADTRIISEIDLCTYNFMIKNDVKP
FT KLDLSPQSEYSALQTVVYPDKIVNAIFGPVMKEINERILLALRPHVVYNTRMTAEELDR
FT SVEFLDVREQYDAVEIDFSKFDKSKTSLHIRAVIELYKIFGLDDMLAFLWEKSQCQTTI
FT RDRQNGLIAHILYQQKSGNCDTYGSNTWSAALALLDALPLERAKFMVFGGDDSLVFFPK
FT NMNLADPCGRLASLWNFDCKFFNFQNNMFCGKFLLKIGENYKFAPDPFKLLTKLGRKDI
FT KNDILLSEIFISISDNYRSYHDYRVLEALNVAVVERYKLSQDVLFGLCALKKYLFNFDL
FT FRTLFSYKGKLHCTNVSRNFDW"
FT - 3940. .3942
FT /note="leaky stop codon (taa)"
FT 3'UTR 5464. .5834
FT /note="The 3'UTR has the potential to fold into a
FT t-RNA-like structure with a GAC anticodon for valine"
XX
SQ Sequence 5834 BP; 1717 A; 930 C; 1365 G; 1822 T; 0 other;
Z97873 Length: 5834 December 21, 2001 16:07 Type: N Check: 7673 ..
1 gtattatttt ctcaacggtt atttaccaaa gagaagattt ctataccatt
51 aattttgaaa agtctgcttt ttagcaataa atcttttcat attactggtt
101 tgtcttttta tttttacgaa aattctacga tggaatctac aaacattctg
151 acgcaaatta atcgtgatga tataattcag gccgtattaa ctacaagtgc
201 gagtaggact cagtctgctt tacatgaaac tttgagtagg gtgattgatg
251 ataatataaa gaatgctctt aaagctaaca caaaaaagaa aacagttgat
301 gtgaaacgaa acttgtctga agaacaggtt cagtatttat gtgagcttta
351 tcctgaaaga aaaataatta catctaattc tgaacgtggt actcatagta
401 tggctgcggc tatgcgaaaa attgaaacgg atttggtttt gtcactgttt
451 cctaagaata gcgttatata tgatattggt ggtaattggg cgacgcacgc
501 taagtgtaat gatggaagga aagtgcattg ttgctgtccg atattggact
551 atcgtgatgc gcagaggaag atgacgcgga tgttaaactt tcataagttt
601 accagcgatt cttctgagat acctcctgat atcagagaaa aagcggagat
651 gatagccgag gataacgcca ttataactgc aaatgtgcgg gaaggtgatc
701 tgaattcttc tgctttgaac ggacgttggt tttgccaaaa caagtttgaa
751 gactgtgttt ttgatccgcg tgacattttg acgggtaaga ctgctaagga
801 taatgtaatg gtttatgcca tggcaattca cagtatttat gatataaatg
851 tttatgaatt ggctacggcg ttacagcgaa aaggaataaa gcggatggta
901 ggtacttttc tgttttctgt ggacatgttg ctcggaagaa aaagtggtga
951 attgccatct gttaacgggt tttataagtt ggaaggcgaa tatataaaat
1001 acgggtttta cgacgatcca aattgcggtt acagacataa gttttcttcg
1051 ctcaaggctt acttgacaaa aacttttgtt aaagcagcaa atggttccgt
1101 gttttacctg gagttaactg acttaagggg tgacgtaatg tactttacta
1151 tgacagatgc tacagaggca cgggcttccg gtattatgaa agatgagtca
1201 tttaagtgca ttccagtgga cgcaaaaaac aaggtagttt ttcctttgtt
1251 tgttgtggat gaaaccactg acacacttat gtttctcgaa cgcgtattac
1301 caaaagattt tgtgcatcgc gctattgagt atgtcaatcg ttgtaaggag
1351 aatcagttaa cggttgaaag tattgttagt tatttatcgt ctactaataa
1401 tgccgtgata attggtgggt ctgcgagaaa agtggaagag aaggtggatc
1451 cttctttgct accgatgatc gcctccactt tgttagttta cagtgaaatg
1501 cagagggcta aacagaagac tgttattcaa aagctgagaa ttcatgtgaa
1551 gaatacagtt actattggtg atttgttgaa ccacgctttc cataaggtgt
1601 tcggcgccgt tggtgtcggt cagttggcgc tgcagagctt tgctagatgg
1651 ttaaagtttt ttcatggctc aggggttatc gagatgaatg acctttttat
1701 gtacgtagag attgaagacc gtattaggtt atggtctaag aaatctcgag
1751 agcacgaatt cttcctgacc tttgatgatc tgacagaaaa aagtcgtttg
1801 tacgaagagt acaacgaaga gagacgtagg atttctgaca agatcattaa
1851 ggaaaaaggt ttgagttcta aagacctttc tttggaagaa gataaggaaa
1901 agacggtaga tgaaattctg gcctggatgg agaaatctga agatttgaag
1951 gcttcggagt tgcgttctaa gttgataggg attcgaaaga atcgtgcacg
2001 tgttgataaa cgaaagtttg gtgaggcgca tcaggtaaat acggctgtat
2051 tgcagaggtt taccgaggcg gacgacgatc acttttccac gtgtgcttta
2101 aatactccag gcaagtggtg ggttgatgtt ctgggtgaat ttttaggaaa
2151 aacattatcg gaggtttgtg ctactaatat tgttttttct gatatagaac
2201 ccaatgataa cactgaaggt tttgatactg ttgaatatgc tgatagagac
2251 gatatggcta gcgatgtcga aacgtcgatt agtcagtgcg ttgagtccaa
2301 cgatgagtgt gtggacgaag atggttacag ttgcgacggt gattccaaag
2351 tcgagcattc tactttaaac agtaattatg gtgcgttgac gccacctcct
2401 agagaagagg taaaagattc agaggagggc gttgatgtga cagttgaaga
2451 cgtatctacg gatataattg agtcgcattg tgatggaaga tgggcattga
2501 tggcggaaga ttctgatttc gccattgacc agaagcgatc cgaggcacta
2551 aatattatgg aagttggata tgctaaatta ccgtctaaac cagattactt
2601 agaaagtgat gattttagaa tgcgggcaaa gaaagagttt atctggtact
2651 tagaatgtaa gttggtttca gataagtctg cgatgactga tattgtgcga
2701 gattatgttt ataacatgta ccataacagt ctttgcgagt ttccgaaaaa
2751 ttcttgcttt ctaagttacg aaggtgatga caacggtagt tgggcttggg
2801 gcaggaaacc ggttaggttg ggccacgctt acgctgttca cttttatgcc
2851 gctgattgga agactaactg tcgacttgta agtttgtcat ggaacaaaga
2901 cgaggaagga aatttcgttg gcgataagcc cgttatttct actaattccg
2951 gagtttacat gctatgcgat ttgacatttc taatgaatga aatgatcatt
3001 ttggaaaatt tgcagttttc gttaaagacc aggtttcaga agcatattcc
3051 acacgttaca cttattgatg gtgtacctgg gtgtggtaaa tcaactcata
3101 ttgttaaaga agctagactg gaaaaccagt acgtactcac tatgggtcga
3151 gaagcagctg cagagttgcg agagcgattt aaaactgtac gcggttcgac
3201 cgaagaacag ttgaaaagag tgcggactgt tgattctttt ttgatgaacg
3251 ataaggactc tagggccaaa attttgcatt tcgacgaggc attgatggcg
3301 catgctggta tggtttactt ttgtgcagat aatttgtctg ctaggacaat
3351 tatttgtcaa ggtgattctc agcagatacc atttattaac cgcgttgaat
3401 ccataacttt ggaatacgct aagttggaaa taactaacgt ggtggagaaa
3451 agacttacct atcgttcccc tttggacgtt gcctgttttt tgacaagaaa
3501 aaatttttat tggcacttcc actgttatga gcgcaaatcc aacggacgtt
3551 ctataagcgt tgttggtccc cgagatggca tgacgtctaa ctacagtatt
3601 cctaagaaga aaggtgctca atacctcact tttactcaaa gtgagaagga
3651 agacatggtt cgttacctgg gtaagggaca gtggtctgta aacactgtac
3701 atgaaagtca aggaaaaact tacgatgatg ttatattagt taggttgaag
3751 cccactgata atgaaattta tcctggtggg cggaaatcaa aaccttacgt
3801 cgtagttggt actacgcggc atagacgcag tttagtgtac tacacacgtg
3851 ctgaggacat tctgtacaga gatataactg aaatgatgag tgtgcaagaa
3901 ggaaaattgc acaaacattt gttcacggag agtactcaat aacggtgtgg
3951 gtcgaagtac gagtcgataa ccgtttccga tcgtccggta agtgttcctg
4001 acgttggagc cgttgaagat ttgcaggtta tgtatgacat tgcttttcct
4051 ggcaattcgg ttattgagac gtatttcgac gggtacgatg ttgctacggg
4101 aggtttagaa atagatattg ctaatataaa atattatccc aacaagcaaa
4151 agcgaatgtg gcaagaagtt cgtggactta cacctgcttt gcgaactgct
4201 atgccggaga aaaggcagag cggtttgata gagagcgttc tggcgcttaa
4251 caagagaaat atggctgctc ctaggttaca agaatcggtt aacgaattcg
4301 agattattga aaatgtcatt tctaaggcta aggctgtttt cttcgatgag
4351 aaattcatcg atgcatctcc gatgaactcc gtatcaaatt gtcaaaaatg
4401 gtgggataaa cagtcggtta ccgcgcagaa acagatgttg gcggatacta
4451 gaattatatc cgaaattgac ttgtgcacat ataacttcat gattaaaaat
4501 gatgttaagc ctaagttgga tttgtcgcca caatcggaat attctgcatt
4551 acaaacagtt gtctatccag ataaaattgt taatgctatt ttcggtcctg
4601 tgatgaagga gataaacgaa agaatattgt tagcgttgcg gcctcatgtt
4651 gtgtataaca caaggatgac agccgaagaa ctagataggt ccgttgaatt
4701 tctcgacgtt cgcgaacaat acgacgctgt tgagattgat ttttctaaat
4751 ttgataaatc aaaaacttct ttacacatta gggcagtgat agaattatac
4801 aagatttttg gccttgacga tatgttagct ttcttatggg agaagtcaca
4851 gtgtcagact acgattcgtg atcgtcagaa tggactaatt gcgcatatac
4901 tttatcaaca aaaatctggt aactgtgata catatggttc taatacttgg
4951 tcggctgctc ttgctctttt ggatgcgtta ccacttgaac gagctaagtt
5001 catggtattt ggcggtgatg attctcttgt gtttttccca aaaaatatga
5051 atttagctga cccttgtggt aggttggctt ctctttggaa tttcgattgt
5101 aaatttttca actttcaaaa caacatgttt tgtggtaagt ttcttttaaa
5151 aattggagaa aattataagt ttgctccgga tccttttaaa ttgcttacaa
5201 aacttggtag gaaagatatc aaaaatgata ttttgcttag tgaaattttt
5251 atttctataa gcgataatta ccgttcttat catgactaca gagttttaga
5301 agctttaaac gtggcggtcg ttgaacgtta taaattgtct caagacgttt
5351 tgtttggttt gtgtgcttta aaaaaatact tgtttaactt tgatttattc
5401 cgcacacttt tctcttataa aggcaaatta cactgcacta acgtgagtag
5451 aaattttgat tggtaaaatt tccttggttc tccgttttgt gagtttaaga
5501 tcattatttt gtgtaatttg gtgtggagag atacagtcta tttgtacttg
5551 taaatgatta tttgagctga tcactcaacg tggatttcac gatagaaatc
5601 ggtgtttttc attccaccta aatcgaaatg tactacggta gcgcgaacct
5651 tatcgcgcag tgttttgaag tccacttaaa tagaacttct ttccacggtc
5701 tctttcgcta ctgaattaat tataaaaact tcagtattcg atttatgcag
5751 atgagagtag tatctctcga tcatcaagac acgatgattc tgtggggtgc
5801 aaatcccccc ctttacttga gggaaatcaa gccc